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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Li, Xiaoqing Lu, Yu Ngiam, Kee Yuan Yu, Zichang Furqan, Mohammad Shaheryar Shenzhen Technology University College of Big Data and Internet Shenzhen China Shenzhen University National Engineering Laboratory for Big Data System Computing Technology Shenzhen China National University of Singapore Yong Loo Lin School of Medicine Department of Surgery Singapore

ISBN: (纸本)9798350386226

Accurate analysis of Fetal Heart Rate (FHR) signal is often impeded by challenges such as data scarcity and label imbalance, which affect the reliability and robustness of deep learning models. To address these challenges, this study introduces FHRDiff, a novel diffusion model conditioned on Phase-Rectified Signal Averaging (PRSA) spectrograms for the creation of synthetic FHR signals. Our model integrates time encoding, condition generation from PRSA spectrograms, and residual blocks with dilated convolutions to effectively manage temporal dynamics and long-range dependencies. Extensive qualitative and quantitative experiments on FHR signal synthesis demonstrate the feasibility and effectiveness of FHRDiff. Compared to Generative Adversarial Networks (GANs) and image-based diffusion model, our method achieves the highest signal fidelity and distribution similarity, with key measures including 0.067 maximum mean deviation (MMD), 0.492 percent root mean square difference (PRD), 1.763 relative entropy (RE), and 0.160 Frechet distance (FD). Expert validation confirms the model's capacity to accurately generate data for normal and abnormal FHR signals based on the paired condition. In addition, an ablation study was conducted to highlight that the spectrogram paired condition can guide the diffusion model to produce synthetics FHR signals with greater diversity compared to unconditional models. The results emphasize diffusion models' potential for broad application in biomedical time series analysis, such as generation, imputation and noise removal. © 2024 IEEE.

关键词： Heart

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GHVC-Net: Hypervolume Contribution Approximation Based on Graph Neural Network

GHVC-Net: Hypervolume Contribution Approximation Based on Gr...

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2024 IEEE International Conference on systems, Man, and Cybernetics, SMC 2024

作者： Wu, Guotong Nan, Yang Shang, Ke Ishibuchi, Hisao Shenzhen University National Engineering Laboratory for Big Data System Computing Technology Shenzhen518060 China Southern University of Science and Technology Department of Computer Science and Engineering Shenzhen518055 China

ISBN: (纸本)9781665410205

This paper proposes a framework called GHVC-Net that uses the graph neural network (GNN) model to approximate each solution's hypervolume contribution (HVC). GHVC-Net is permutation invariant and can handle solution sets of arbitrary size, similar to the properties of GNN. Compared to HVC-Net (i.e., a machine learning model for HVC approximation), GHVC-Net achieves better accuracy with less training time. GHVC-Net is also compared with traditional approximation methods, such as line-based and point-based methods, to demonstrate its ability to identify the solution with the smallest (largest) HVC. © 2024 IEEE.

关键词： Neural network models

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DD-UNet: Densely Dilated U-Net for Curvilinear Structure Segmentation in Fundus Image

DD-UNet: Densely Dilated U-Net for Curvilinear Structure Seg...

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2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023

作者： Zhang, Yindong Chen, Jie Wang, Li Chen, Miaohong Zhang, Guoming Li, Jianqiang Shenzhen University College of Computer Science and Software Engineering China Shenzhen University National Engineering Laboratory for Big Data System Computing Technology China Shenzhen Eye Hospital China

ISBN: (纸本)9798350337488

Retinopathy of Prematurity (ROP) is a retina disorder that affects premature infants with lower weights. If the patient cannot get the treatment in time when the illness reaches the last stage, irreversible vision loss will be caused. Nevertheless, there has been relatively little consideration given to the segmentation of the ridge, the key clinical characteristic of the illness. Additionally, existing research has not adequately addressed several segmentation issues, such as fragmentary topology, class imbalance, and false positives. This paper proposes a Densely Dilated U-Net (DD-UNet) improved from U-Net to tackle these challenges. Furthermore, the post-processing techniques based on the spatial relationship between vessels and ridges, along with the relative pixel counts of ridges and false positive results is integrated to mitigate false positive results in the predicted ridge. To enhance the precision of thin vessel, a sliding window sampling method is introduced for refined training. Compared with the state-of-the-art models in medical image segmentation, DD-UNet performs well in curvilinear structure segmentation of fundus image. For instance, our DD-UNet outperforms the Attention U-Net by 6.26% in terms of sensitivity and exhibits a 1.85% higher dice score in ridge segmentation. © 2023 IEEE.

关键词： curvilinear structure segmentation fundus image Retinopathy of Prematurity (ROP) ridge segmentation vessel segmentation

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Minimal Context-Switching data Race Detection with dataflow Tracking

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Journal of Computer Science & technology 2024年第1期39卷 211-226页

作者：郑龙李洋辛杰刘海峰郑然廖小飞金海 National Engineering Research Center for Big Data Technology and System School of Computer Science and Technology Huazhong University of Science and TechnologyWuhan 430074China Services Computing Technology and System Laboratory School of Computer Science and TechnologyHuazhong University of Science and TechnologyWuhan 430074China Cluster and Grid Computing Laboratory School of Computer Science and TechnologyHuazhong University of Science and TechnologyWuhan 430074China

data race is one of the most important concurrent anomalies in multi-threaded *** con-straint-based techniques are leveraged into race detection,which is able to find all the races that can be found by any oth-er sound race ***,this constraint-based approach has serious limitations on helping programmers analyze and understand data ***,it may report a large number of false positives due to the unrecognized dataflow propa-gation of the ***,it recommends a wide range of thread context switches to schedule the reported race(in-cluding the false one)whenever this race is exposed during the constraint-solving *** ad hoc recommendation imposes too many context switches,which complicates the data race *** address these two limitations in the state-of-the-art constraint-based race detection,this paper proposes DFTracker,an improved constraint-based race detec-tor to recommend each data race with minimal thread context ***,we reduce the false positives by ana-lyzing and tracking the dataflow in the *** this means,DFTracker thus reduces the unnecessary analysis of false race *** further propose a novel algorithm to recommend an effective race schedule with minimal thread con-text switches for each data *** experimental results on the real applications demonstrate that 1)without removing any true data race,DFTracker effectively prunes false positives by 68%in comparison with the state-of-the-art constraint-based race detector;2)DFTracker recommends as low as 2.6-8.3(4.7 on average)thread context switches per data race in the real world,which is 81.6%fewer context switches per data race than the state-of-the-art constraint based race ***,DFTracker can be used as an effective tool to understand the data race for programmers.

关键词： data race satisfiability modulo theory multi-threaded program dynamic detection

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Ethereum smart contract security research:survey and future research opportunities

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Frontiers of Computer Science 2021年第2期15卷 143-160页

作者： Zeli WANG Hai JIN Weiqi DAI Kim-Kwang Raymond CHOO Deqing ZOU National Engineering Research Center for Big Data Technology and System Services Computing Technology and System LabClusters and Grid Computing LabHubei Engineering Research Center on Big Data SecurityWuhan430074China School of Computer Science and Technology Huazhong University of Science and TechnologyWuhan430074China School of Cyber Science and Engineering Huazhong University of Science and TechnologyWuhan430074China Shenzhen Huazhong University of Science and Technology Research Institute Shenzhen518057China Department of Information Systems and Cyber Security University of Texas at San AntonioSan AntonioTX78249-0631USA

Blockchain has recently emerged as a research trend,with potential applications in a broad range of industries and *** particular successful Blockchain technology is smart contract,which is widely used in commercial settings(e.g.,high value financial transactions).This,however,has security implications due to the potential to financially benefit from a security incident(e.g.,identification and exploitation of a vulnerability in the smart contract or its implementation).Among,Ethereum is the most active and ***,in this paper,we systematically review existing research efforts on Ethereum smart contract security,published between 2015 and ***,we focus on how smart contracts can be maliciously exploited and targeted,such as security issues of contract program model,vulnerabilities in the program and safety consideration introduced by program execution *** also identify potential research opportunities and future research agenda.

关键词： smart contract security blockchain vulnerability unreliable data

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FDGLib: A Communication Library for Efficient Large-Scale Graph Processing in FPGA-Accelerated data Centers

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Journal of Computer Science & technology 2021年第5期36卷 1051-1070页

作者： Yu-Wei Wu Qing-Gang Wang Long Zheng Xiao-Fei Liao Hai Jin Wen-Bin Jiang Ran Zheng Kan Hu National Engineering Research Center for Big Data Technology and System School of Computer Science and Technology Huazhong University of Science and TechnologyWuhan 430074China Services Computing Technology and System Laboratory School of Computer Science and Technology Huazhong University of Science and TechnologyWuhan 430074China Cluster and Grid Computing Laboratory School of Computer Science and TechnologyHuazhong University of Science and TechnologyWuhan 430074China

With the rapid growth of real-world graphs,the size of which can easily exceed the on-chip(board)storage capacity of an accelerator,processing large-scale graphs on a single Field Programmable Gate Array(FPGA)becomes *** multi-FPGA acceleration is of great necessity and *** cloud providers(e.g.,Amazon,Microsoft,and Baidu)now expose FPGAs to users in their data centers,providing opportunities to accelerate large-scale graph *** this paper,we present a communication library,called FDGLib,which can easily scale out any existing single FPGA-based graph accelerator to a distributed version in a data center,with minimal hardware engineering *** provides six APIs that can be easily used and integrated into any FPGA-based graph accelerator with only a few lines of code *** the torus-based FPGA interconnection in data centers,FDGLib also improves communication efficiency using simple yet effective torus-friendly graph partition and placement *** interface FDGLib into AccuGraph,a state-of-the-art graph *** results on a 32-node Microsoft Catapult-like data center show that the distributed AccuGraph can be 2.32x and 4.77x faster than a state-of-the-art distributed FPGA-based graph accelerator ForeGraph and a distributed CPU-based graph system Gemini,with better scalability.

关键词： data center accelerator graph processing distributed architecture communication optimization

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A Survey on Graph Processing Accelerators:Challenges and Opportunities

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Journal of Computer Science & technology 2019年第2期34卷 339-371页

作者： Chuang-Yi Gui Long Zheng Bingsheng He Cheng Liu Xin-Yu Chen Xiao-Fei Liao Hai Jin National Engineering Research Center for Big Data Technology and System School of Computer Science and Technology Huazhong University of Science and Technology Wuhan 430074 China Services Computing Technology and System Laboratory School of Computer Science and Technology Huazhong University of Science and Technology Wuhan 430074 China Cluster and Grid Computing Laboratory School of Computer Science and Technology Huazhong University of Science and Technology Wuhan 430074 China School of Computing National University of Singapore Singapore 117418 Singapore Institute of Computing Technology Chinese Academy of Sciences Beijing 100190 China

Graph is a well known data structure to represent the associated relationships in a variety of applications,e.g.,data science and machine *** a wealth of existing efforts on developing graph processing systems for improving the performance and/or energy efficiency on traditional architectures,dedicated hardware solutions,also referred to as graph processing accelerators,are essential and emerging to provide the benefits significantly beyond what those pure software solutions can *** this paper,we conduct a systematical survey regarding the design and implementation of graph processing ***,we review the relevant techniques in three core components toward a graph processing accelerator:preprocessing,parallel graph computation,and runtime *** also examine the benchmarks and results in existing studies for evaluating a graph processing ***,we find that there is not an absolute winner for all three aspects in graph acceleration due to the diverse characteristics of graph processing and the complexity of hardware *** finally present and discuss several challenges in details,and further explore the opportunities for the future research.

关键词： graph processing accelerator domain-specific architecture performance energy efficiency

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Modeling and Control of a Conical Dielectric Elastomer Actuator Motion system With Springs and Input Square Term

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IEEE/ASME Transactions on Mechatronics 2025年

作者： Zhang, Xiuyu Liu, Xiru Xu, Junjie Chen, Xinkai Northeast Electric Power University School of Automation Engineering Jilin Province International Research Center of Precision Drive and Intelligent Control Jilin 132012 China Jilin Medical University School of Basic Medical Science Department of Biochemistry and Molecular Biology Jilin 132013 China Shenzhen University National Engineering Laboratory for Big Data System Computing Technology Shenzhen 518060 China

Dielectric elastomer actuator (DEA) is a kind of flexible intelligent material actuators and widely used in motion driving devices of soft biomimetic robots. However, both the butterfly-like hysteresis and the square term of the control input make the controller design become challenging. To this end, this article proposes an effective control scheme for a motion platform driven by DEA with the following contributions: first, a new butterfly-like KP (BKP) hysteresis nonlinear mathematical model is constructed to accurately curve the butterfly-like hysteresis in DEA. Second, an implicit inverse compensation control algorithm is proposed, where a novel searching mechanism is designed to extract the actual control signal from the hysteresis temporary controller with input square term. Third, the conical dielectric elastomer motion platform with spring is constructed and the effectiveness of the proposed BKP hysteresis model and input square implicit inverse control strategy is verified through the constructed motion platform. © 1996-2012 IEEE.

关键词： Flexible actuators of soft robotics hysteresis input squared system

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Unsupervised feature selection based on Markov blanket and particle swarm optimization

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Journal of systems engineering and Electronics 2017年第1期28卷 151-161页

作者： Yintong Wang Jiandong Wang Hao Liao Haiyan Chen College of Computer Science and Technology Nanjing University of Aeronautics and Astronautics Key Laboratory of Trusted Cloud Computing and Big Data Analysis Nanjing Xiaozhuang University College of Computer Science and Software Engineering Shenzhen University

Feature selection plays an important role in data mining and recognition, especially in the large scale text, image and biological data. Specifically, the class label information is unavailable to guide the selection of minimal feature subset in unsupervised feature selection, which is challenging and interesting. An unsupervised feature selection based on Markov blanket and particle swarm optimization is proposed named as UFSMB-PSO. The proposed method seeks to find the high-quality feature subset through multi-particles' cooperation of particle swarm optimization without using any learning algorithms. Moreover, the features' relevance will be computed based on an information metric of relevance gain, which provides an information theoretical foundation for finding the minimization of the redundancy between features. Our results on several benchmark datasets demonstrate that UFSMB-PSO can achieve significant improvement over state of the art unsupervised methods. © 1990-2011 Beijing Institute of Aerospace Information.

关键词： Character recognition data mining Feature extraction Information theory

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RSP-gcForest: A Distributed Deep Forest via Random Sample Partition

RSP-gcForest: A Distributed Deep Forest via Random Sample Pa...

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2023 IEEE International Conference on big data, bigdata 2023

作者： Li, Mark Junjie Cai, Wenzhu Lin, Yigang Huang, Sunjie Huang, Joshua Zhexue Peng, Patrick Xiaogang Shenzhen University College of Computer Science and Software Engineering Shenzhen China Shenzhen University National Engineering Laboratory for Big Data System Computing Technology Shenzhen China Shenzhen Academy of Inspection and Quarantine China

ISBN: (纸本)9798350324457

Deep Forest, a powerful alternative to deep neural networks, has gained much attention due to its advantages, such as low complexity, minimal hyperparameter requirements, and strong application performance. In the current big data environment, where data volumes and model complexities are growing rapidly, distributed computing is needed to increase computational efficiency. Recently, a distributed deep forest approach, called BLB-gcForest (Bag of Little Bootstraps-gcForest), has been successful in reducing training instances within cascade forests, combining BLB and granularity segmentation, thus improving the computational efficiency and scalability of distributed deep forests. However, it still transmits the entire data set between layers and requires double sampling with BLB, limiting the amount of data and the scalability of resource utilization. This paper introduces a novel algorithm, RSP-gcForest, based on Random Sample Partition (RSP) to improve distributed deep forests computational efficiency and scalability. RSP-gcForest uses block-level samples that replace the full dataset, significantly reducing interlayer instance transmission and prediction within cascade forests. Additionally, RSP blocks are integrated with the segmentation granularity of cascade forests for ensemble learning, effectively addressing computational efficiency and resource constraints. We conducted experiments on four extensive datasets using Spark and evaluated performance across five key metrics. The results clearly show that RSP-gcForest, while maintaining high classification quality, surpasses state-of-the-art methods in terms of computational efficiency and resource utilization. Furthermore, it achieves superior load balancing, demonstrating its potential as a powerful tool in big data and distributed computing. © 2023 IEEE.

关键词： Deep forest Distributed computing Ensemble Learning Random Sample Partition

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