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IoT Stream Processing and Analytics in The Fog

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arXiv 2017年

作者： Yang, Shusen National Engineering Laboratory for Big Data Algorithms and Analytics Technology Xi’an Jiaotong University China

The emerging Fog paradigm has been attracting increasing interests from both academia and industry, due to the low-latency, resilient, and cost-effective services it can provide. Many Fog applications such as video mining and event monitoring, rely on data stream processing and analytics, which are very popular in the Cloud, but have not been comprehensively investigated in the context of Fog architecture. In this article, we present the general models and architecture of Fog data streaming, by analyzing the common properties of several typical applications. We also analyze the design space of Fog streaming with the consideration of four essential dimensions (system, data, human, and optimization), where both new design challenges and the issues arise from leveraging existing techniques are investigated, such as Cloud stream processing, computer networks, and mobile computing. Copyright © 2017, The Authors. All rights reserved.

关键词： Fog

Robust frequent directions with application in online learning

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The Journal of Machine Learning Research

The Journal of Machine Learning Research 2019年第1期20卷

作者： Luo Luo Cheng Chen Zhihua Zhang Wu-Jun Li Tong Zhang Department of Computer Science and Engineering Shanghai Jiao Tong University Shanghai China National Engineering Lab for Big Data Analysis and Applications School of Mathematical Sciences Peking University Beijing China National Key Laboratory for Novel Software Technology Collaborative Innovation Center of Novel Software Technology and Industrialization Department of Computer Science and Technology Nanjing University Nanjing China Computer Science & Mathematics Hong Kong University of Science and Technology Hong Kong

The frequent directions (FD) technique is a deterministic approach for online sketching that has many applications in machine learning. The conventional FD is a heuristic procedure that often outputs rank deficient matrices. To overcome the rank deficiency problem, we propose a new sketching strategy called robust frequent directions (RFD) by introducing a regularization term. RFD can be derived from an optimization problem. It updates the sketch matrix and the regularization term adaptively and jointly. RFD reduces the approximation error of FD without increasing the computational cost. We also apply RFD to online learning and propose an effective hyperparameter-free online Newton algorithm. We derive a regret bound for our online Newton algorithm based on RFD, which guarantees the robustness of the algorithm. The experimental studies demonstrate that the proposed method outperforms state-of-the-art second order online learning algorithms.

关键词： frequent directions matrix approximation online Newton algorithm online convex optimization sketching

Biomedical image analysis competitions: The state of current participation practice

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arXiv 2022年

作者： Eisenmann, Matthias Reinke, Annika Weru, Vivienn Tizabi, Minu Dietlinde Isensee, Fabian Adler, Tim J. Godau, Patrick Cheplygina, Veronika Kozubek, Michal Maier-Hein, Klaus Jäger, Paul F. Kopp-Schneider, Annette Maier-Hein, Lena Ali, Sharib Gupta, Anubha Kybic, Jan Noble, Alison de Solórzano, Carlos Ortiz Pachade, Samiksha Petitjean, Caroline Sage, Daniel Wei, Donglai Wilden, Elizabeth Alapatt, Deepak Andrearczyk, Vincent Baid, Ujjwal Bakas, Spyridon Balu, Niranjan Bano, Sophia Bawa, Vivek Singh Bernal, Jorge Bodenstedt, Sebastian Casella, Alessandro Choi, Jinwook Commowick, Olivier Daum, Marie Depeursinge, Adrien Dorent, Reuben Egger, Jan Eichhorn, Hannah Engelhardt, Sandy Ganz, Melanie Girard, Gabriel Hansen, Lasse Heinrich, Mattias Heller, Nicholas Hering, Alessa Huaulmé, Arnaud Kim, Hyunjeong Li, Hongwei Bran Landman, Bennett Li, Jianning Ma, Jun Martel, Anne Martín-Isla, Carlos Menze, Bjoern Nwoye, Chinedu Innocent Oreiller, Valentin Padoy, Nicolas Pati, Sarthak Payette, Kelly Sudre, Carole van Wijnen, Kimberlin Vardazaryan, Armine Vercauteren, Tom Wagner, Martin Wang, Chuanbo Yap, Moi Hoon Yu, Zeyun Yuan, Chun Zenk, Maximilian Zia, Aneeq Zimmerer, David Bao, Rina Choi, Chanyeol Cohen, Andrew Dzyubachyk, Oleh Galdran, Adrian Gan, Tianyuan Guo, Tianqi Gupta, Pradyumna Haithami, Mahmood Ho, Edward Jang, Ikbeom Li, Zhili Luo, Zhengbo Lux, Filip Makrogiannis, Sokratis Müller, Dominik Oh, Young-Tack Pang, Subeen Pape, Constantin Polat, Gorkem Reed, Charlotte Rosalie Ryu, Kanghyun Scherr, Tim Thambawita, Vajira Wang, Haoyu Wang, Xinliang Xu, Kele Yeh, Hung Yeo, Doyeob Yuan, Yixuan Zeng, Yan Zhao, Xin Abbing, Julian Adam, Jannes Adluru, Nagesh Agethen, Niklas Ahmed, Salman Al Khalil, Yasmina Alenyà, Mireia Alhoniemi, Esa An, Chengyang Arega, Tewodros Weldebirhan Avisdris, Netanell Aydogan, Dogu Baran Bai, Yingbin Calisto, Maria Baldeon Basaran, Berke Doga Beetz, Marcel Bian, Hao Blansit, Kevin Bloch, Louise Bohnsack, Robert Bosticardo, Sara Breen, Jack Brudfors, Mikael Brüngel, Raphael Cabezas, Mariano Cacciola, Alb Heidelberg Division of Intelligent Medical Systems Germany Heidelberg HI Helmholtz Imaging Germany Faculty of Mathematics and Computer Science Heidelberg University Heidelberg Germany Heidelberg Division of Biostatistics Germany Heidelberg Division of Medical Image Computing Germany Heidelberg HI Applied Vision Lab Germany IT University of Copenhagen Copenhagen Denmark Centre for Biomedical Image Analysis Masaryk University Brno Czech Republic Heidelberg Interactive Machine Learning Group Germany Faculty of Mathematics and Computer Science and Medical Faculty Heidelberg University Heidelberg Germany NCT Heidelberg DKFZ University Hospital Heidelberg Germany School of Computing University of Leeds Leeds United Kingdom SBILab Department of ECE IIIT-Delhi India Faculty of Electrical Engineering Czech Technical University Prague Czech Republic Institute of Biomedical Engineering University of Oxford United Kingdom Center for Applied Medical Research Pamplona Spain Shri Guru Gobind Singhji Institute of Engineering and Technology Maharashtra Nanded India Université de Rouen Normandie France Lausanne Switzerland School of Engineering and Applied Science Harvard University United States ICube University of Strasbourg CNRS France Institute of Informatics School of Management HES-SO Valais-Wallis University of Applied Sciences and Arts Western Switzerland Techno-Pôle 3 Sierre3960 Switzerland Department of Nuclear Medicine and Molecular Imaging Lausanne University Hospital Rue du Bugnon 46 LausanneCH-1011 Switzerland University of Pennsylvania PhiladelphiaPA United States Department of Radiology University of Washington United States Wellcome EPSRC Centre for Interventional and Surgical Sciences University College London London United Kingdom Visual Artificial Intelligence Lab Oxford Brookes University Oxford United Kingdom Universitat Autònoma de Barcelona & Computer Vision Center Spain Dresden Fetscherstraße 74 PF 64 Dresden01307 Germany

The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps. © 2022, CC BY.

关键词： Benchmarking

Cross-domain Human Parsing via Adversarial Feature and Label Adaptation

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arXiv 2018年

作者： Liu, Si Sun, Yao Zhu, Defa Ren, Guanghui Chen, Yu Feng, Jiashi Han, Jizhong Institute of Information Engineering Chinese Academy of Sciences *** Department of Ece National University of Singapore Jiangsu Key Laboratory of Big Data Analysis Technology/B-DAT Nanjing University of Information Science and Technology Collab. Innov. Ctr. of Atmosph. Environ. and Equip. Technol. Nanjing Univ. of Info. Sci. and Technol. Nanjing China

Human parsing has been extensively studied recently (Yamaguchi et al. 2012;Xia et al. 2017) due to its wide applications in many important scenarios. Mainstream fashion parsing models (i.e., parsers) focus on parsing the high-resolution and clean images. However, directly applying the parsers trained on benchmarks of high-quality samples to a particular application scenario in the wild, e.g., a canteen, airport or workplace, often gives non-satisfactory performance due to domain shift. In this paper, we explore a new and challenging cross-domain human parsing problem: Taking the benchmark dataset with extensive pixel-wise labeling as the source domain, how to obtain a satisfactory parser on a new target domain without requiring any additional manual labeling? To this end, we propose a novel and efficient crossdomain human parsing model to bridge the cross-domain differences in terms of visual appearance and environment conditions and fully exploit commonalities across domains. Our proposed model explicitly learns a feature compensation network, which is specialized for mitigating the cross-domain differences. A discriminative feature adversarial network is introduced to supervise the feature compensation to effectively reduces the discrepancy between feature distributions of two domains. Besides, our proposed model also introduces a structured label adversarial network to guide the parsing results of the target domain to follow the high-order relationships of the structured labels shared across domains. The proposed framework is end-to-end trainable, practical and scalable in real applications. Extensive experiments are conducted where LIP dataset is the source domain and 4 different datasets including surveillance videos, movies and runway shows without any annotations, are evaluated as target domains. The results consistently confirm data efficiency and performance advantages of the proposed method for the challenging cross-domain human parsing problem. Copyright

关键词： Security systems

Neural multi-atlas label fusion: Application to cardiac MR images

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arXiv 2017年

作者： Yang, Heran Sun, Jian Li, Huibin Wang, Lisheng Xu, Zongben School of Mathematics and Statistics Xi’an Jiaotong University China National Engineering Laboratory for Big Data Algorithm and Analysis Technology China Department of Automation Shanghai Jiaotong University China

Multi-atlas segmentation approach is one of the most widely-used image segmentation techniques in biomedical applications. There are two major challenges in this category of methods, i.e., atlas selection and label fusion. In this paper, we propose a novel multi-atlas segmentation method that formulates multi-atlas segmentation in a deep learning framework for better solving these challenges. The proposed method, dubbed deep fusion net (DFN), is a deep architecture that integrates a feature extraction subnet and a non-local patch-based label fusion (NL-PLF) subnet in a single network. The network parameters are learned by end-to-end training for automatically learning deep features that enable optimal performance in a NL-PLF framework. The learned deep features are further utilized in defining a similarity measure for atlas selection. By evaluating on two public cardiac MR datasets of SATA-13 and LV-09 for left ventricle segmentation, our approach achieved 0.833 in averaged Dice metric (ADM) on SATA-13 dataset and 0.95 in ADM for epicardium segmentation on LV-09 dataset, comparing favorably with the other automatic left ventricle segmentation methods. We also tested our approach on Cardiac Atlas Project (CAP) testing set of MICCAI 2013 SATA Segmentation Challenge, and our method achieved 0.815 in ADM, ranking highest at the time of writing. Copyright © 2017, The Authors. All rights reserved.

关键词： Image segmentation

Serendipity of Sharing: Large-Scale Measurement and Analytics for Device-to-Device (D2D) Content Sharing in Mobile Social Networks

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Serendipity of Sharing: Large-Scale Measurement and Analytic...

IEEE Communications Society Conference on Sensor and Ad Hoc Communications and Networks (SECON)

作者： Xiaofei Wang Hui Wang Keqiu Li Shusen Yang Tianpeng Jiang Tianjin Key Laboratory of Advanced Networking Tianjin University Tianjin China National Engineering Laboratory for Big Data Algorithms and Analytics Technology Xi'an Jiaotong University Xi'an China Beijing Anqi Zhilian Technology Co. Ltd. Beijing China

ISBN: (纸本)9781509066001

The heavy multimedia traffic produced by mobile users poses great challenges for the mobile network operators, especially in the areas with large user densities but limited cellular network capacities (e.g. India). Recently, many studies demonstrate that exploiting the device-to- device(D2D) content sharing in offline Mobile Social Networks is a promising solution to cellular data offloading. However, such approaches are based on either unrealistic assumptions, or limited data analytics caused by small data size (e.g. hundreds of MSN users) or single-dimensional feature (e.g. human mobility only), which severely restricts their applications in practice. To address this issue, this paper performs the first large-scale data measurement and multi-feature analytics of D2D content sharing. Specifically, by using Apache Spark over a 20-server cluster, we analyze the behaviors of 30 million users (with 40 billion D2D transmissions and 16 million content files) of Xender, a leading global D2D sharing platform. Several important features are studied, including performance basics, content properties, location relations, meeting dynamics, and social characteristics. Furthermore, as a proof-of-concept study of our analytics, we also develop a multi-feature learning based framework, which demonstrates the large potentials of predicting and recommending D2D sharing activities using machine learning methods.

关键词： Device-to-device communication Mobile computing Videos Multimedia communication Social network services Cellular networks

New constructions of q-variable 1-resilient rotation symmetric functions over Fp

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Science China(Information Sciences) 2016年第7期59卷 240-242页

作者： Jiao DU Shaojing FU Longjiang QU Chao LI Shanqi PANG College of Science National University of Defense Technology School of Mathematics and Information Science Henan Normal University Henan Engineering Laboratory for Big Data Statistical Analysis and Optimal Control Henan Normal University College of Computer Science National University of Defense Technology

Dear editor,Motivated by Refs.[1–10],we devote to constructing a class of q-variable 1-resilient rotation symmetric functions（RSFs）over the finite field F;={0,1,...,p-1}in this *** this letter,let p and q be differ... 详细信息

关键词： over New constructions of q-variable 1-resilient rotation symmetric functions over F_p

The repertoire of mutational signatures in human cancer (vol 578, pg 94, 2020)

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NATURE 2023年第7948期614卷 E41-E41页

作者： Alexandrov, Ludmil B. Kim, Jaegil Haradhvala, Nicholas J. Huang, Mi Ni Ng, Alvin Wei Tian Wu, Yang Boot, Arnoud Covington, Kyle R. Gordenin, Dmitry A. Bergstrom, Erik N. Islam, S. M. Ashiqul Lopez-bigas, Nuria Klimczak, Leszek J. McPherson, John R. Morganella, Sandro Sabarinathan, Radhakrishnan Wheeler, David A. Mustonen, Ville Getz, Gad Rozen, Steven G. Stratton, Michael R. Department of Cellular and Molecular Medicine Department of Bioengineering Moores Cancer Center University of California San Diego CA USA Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Department of Cellular and Molecular Medicine and Department of Bioengineering University of California San Diego La Jolla CA USA UC San Diego Moores Cancer Center San Diego CA USA University of California San Diego San Diego CA USA Broad Institute of MIT and Harvard Cambridge MA USA Center for Cancer Research Massachusetts General Hospital Boston MA USA Massachusetts General Hospital Boston MA USA Department of Pathology Massachusetts General Hospital Boston MA USA Harvard Medical School Boston MA USA Laboratory for Medical Science Mathematics RIKEN Center for Integrative Medical Sciences Yokohama Japan Computational Biology Program Ontario Institute for Cancer Research Toronto ON Canada Programme in Cancer & Stem Cell Biology Duke-NUS Medical School Singapore Singapore Centre for Computational Biology Duke-NUS Medical School Singapore Singapore Programme in Cancer and Stem Cell Biology Duke-NUS Medical School Singapore Singapore Programme in Cancer and Stem Cell Biology Centre for Computational Biology Duke-NUS Medical School Singapore Singapore SingHealth Duke-NUS Institute of Precision Medicine National Heart Centre Singapore Singapore Singapore Cancer Science Institute of Singapore National University of Singapore Singapore Singapore Institute of Molecular and Cell Biology Singapore Singapore Laboratory of Cancer Epigenome Division of Medical Science National Cancer Centre Singapore Singapore Singapore Duke-NUS Medical School Singapore Singapore Human Genome Sequencing Center Baylor College of Medicine Houston TX USA Dan L. Duncan Cancer Center Baylor College of Medicine Houston TX USA Department of Molecular and Human Genetics Baylor College of Medicine Houston TX USA Genome Integrity and Structural Biology Laboratory National Ins

Genomic basis for RNA alterations in cancer (vol 578, pg 129, 2020)

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NATURE 2023年第7948期614卷 E37-E37页

作者： Calabrese, Claudia Davidson, Natalie R. Demircioglu, Deniz Fonseca, Nuno A. He, Yao Lehmann, Kjong-Van Liu, Fenglin Shiraishi, Yuichi Soulette, Cameron M. Urban, Lara Greger, Liliana Li, Siliang Liu, Dongbing Perry, Marc D. Xiang, Qian Zhang, Fan Zhang, Junjun Bailey, Peter Erkek, Serap Hoadley, Katherine A. Hou, Yong Huska, Matthew R. Kilpinen, Helena Korbel, Jan O. Marin, Maximillian G. Markowski, Julia Nandi, Tannistha Pan-Hammarstrom, Qiang Pedamallu, Chandra Sekhar Siebert, Reiner Stark, Stefan G. Su, Hong Tan, Patrick Waszak, Sebastian M. Yung, Christina Zhu, Shida Awadalla, Philip Creighton, Chad J. Meyerson, Matthew Ouellette, B. F. Francis Wu, Kui Yang, Huanming Brazma, Alvis Brooks, Angela N. Goke, Jonathan Ratsch, Gunnar Schwarz, Roland F. Stegle, Oliver Zhang, Zemin European Molecular Biology Laboratory European Bioinformatics Institute Hinxton UK European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany CIBIO/InBIO - Research Center in Biodiversity and Genetic Resources Universidade do Porto Vairão Portugal Berlin Institute for Medical Systems Biology Max Delbruck Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) partner site Berlin Germany German Cancer Research Center (DKFZ) Heidelberg Germany Berlin Institute for Medical Systems Biology Max Delbrück Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) Partner site Berlin Berlin Germany European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Division of Computational Genomics and Systems Genetics German Cancer Research Center (DKFZ) Heidelberg Germany ETH Zurich Zurich Switzerland Memorial Sloan Kettering Cancer Center New York NY USA Weill Cornell Medical College New York NY USA SIB Swiss Institute of Bioinformatics Lausanne Switzerland University Hospital Zurich Zurich Switzerland Computational Biology Center Memorial Sloan Kettering Cancer Center New York NY USA Department of Biology ETH Zurich Zürich Switzerland Department of Computer Science ETH Zurich Zurich Switzerland Korea University Seoul South Korea Computational and Systems Biology Program Memorial Sloan Kettering Cancer Center New York NY USA Department of Physiology and Biophysics Weill Cornell Medicine New York NY USA Institute for Computational Biomedicine Weill Cornell Medicine New York NY USA Controlled Department and Institution New York NY USA Englander Institute for Precision Medicine Weill Cornell Medicine New York NY USA National University of Singapore Singapore Singapore Genome Institute of Singapore Singapore Singapore Computational and Systems Biology Genome Institute of Singap