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Convolutional neural network-based age estimation using B-mode ultrasound tongue image

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arXiv 2021年

作者： Xu, Kele Csapó, Tamás Gábor Feng, Ming National Key Lab of Parallel and Distributed Processing National University of Defense Technology Changsha China School of Computer National University of Defense Technology Changsha China Department of Telecommunications and Media Informatics Budapest University of Technology and Economics Budapest Hungary MTA-ELTE Lendület Lingual Articulation Research Group Budapest Hungary Tongji University Shanghai China

Ultrasound tongue imaging is widely used for speech production research, and it has attracted increasing attention as its potential applications seem to be evident in many different fields, such as the visual biofeedback tool for second language acquisition and silent speech interface. Unlike previous studies, here we explore the feasibility of age estimation using the ultrasound tongue image of the speakers. Motivated by the success of deep learning, this paper leverages deep learning on this task. We train a deep convolutional neural network model on the UltraSuite dataset. The deep model achieves mean absolute error (MAE) of 2.03 for the data from typically developing children, while MAE is 4.87 for the data from the children with speech sound disorders, which suggest that age estimation using ultrasound is more challenging for the children with speech sound disorder. The developed method can be used a tool to evaluate the performance of speech therapy sessions. It is also worthwhile to notice that, although we leverage the ultrasound tongue imaging for our study, the proposed methods may also be extended to other imaging modalities (e.g. MRI) to assist the studies on speech production. © 2021, CC BY-NC-SA.

关键词： Ultrasonics

Load Balancing a Multi-Block Grids-based Application on Heterogeneous Platform

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Load Balancing a Multi-Block Grids-based Application on Hete...

IEEE International Conference on Computational Science and Engineering, CSE

作者： Yonggang Che Chuanfu Xu Zhenghua Wang Institute for Quantum Information & State Key Lab. of High Performance Computing College of Computer National University of Defense Technology Changsha China Science and Technology on Parallel and Distributed Processing Lab National University of Defense Technology Changsha China

ISBN: (数字)9781665403986

ISBN: (纸本)9781665403993

This paper presents a load balancing method for a multi-block grids-based CFD (Computational Fluid Dynamics) application on heterogeneous platform. This method includes an asymmetric task scheduling scheme and a load balancing model. The idea is to balance the computing speed between the CPU and the coprocessor by adjusting the workload and the numbers of threads on both sides. Optimal load balance parameters are empirically selected, guided by a performance model. Performance evaluation is conducted on a computer server consists of two Intel Xeon E5-2670 v3 CPUs and two MIC coprocessors (Xeon Phi 5110P and Xeon Phi 7120P) for the simulation of turbulent combustion in a supersonic combustor. The results show that the performance is highly sensitive to the load balance parameters. With the optimal parameters, the heterogeneous computing achieves a maximum speedup of 2.30 × for a 6-block mesh, and a maximum speedup of 2.66 × for a 8-block mesh, over the CPU-only computing.

关键词： Computational modeling Computational fluid dynamics Load management Servers Task analysis Load modeling Coprocessors

Quantification of transducer misalignment in ultrasound tongue imaging

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arXiv 2020年

作者： Csapó, Tamás Gábor Xu, Kele Department of Telecommunications and Media Informatics Budapest University of Technology and Economics Budapest Hungary MTA-ELTE Lendület Lingual Articulation Research Group Budapest Hungary National Key Lab of Parallel and Distributed Processing National University of Defense Technology Changsha China School of Computer National University of Defense Technology Changsha China

In speech production research, different imaging modalities have been employed to obtain accurate information about the movement and shaping of the vocal tract. Ultrasound is an affordable and non-invasive imaging modality with relatively high temporal and spatial resolution to study the dynamic behavior of tongue during speech production. However, a longstanding problem for ultrasound tongue imaging is the transducer misalignment during longer data recording sessions. In this paper, we propose a simple, yet effective, misalignment quantification approach. The analysis employs MSE distance and two similarity measurement metrics to identify the relative displacement between the chin and the transducer. We visualize these measures as a function of the timestamp of the utterances. Extensive experiments are conducted on a Hungarian and Scottish English child dataset. The results suggest that large values of Mean Square Error (MSE) and small values of Structural Similarity Index (SSIM) and Complex Wavelet SSIM indicate corruptions or issues during the data recordings, which can either be caused by transducer misalignment or lack of gel. Copyright © 2020, The Authors. All rights reserved.

关键词： Ultrasonics

Locality-sensitive sketching for resilient network flow monitoring

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arXiv 2019年

作者： Fu, Yongquan Li, Dongsheng Shen, Siqi Zhang, Yiming Chen, Kai Science and Technology Laboratory of Parallel and Distributed Processing College of Computer Science National University of Defense Technology SING Lab Hong Kong University of Science and Technology

Network monitoring is vital in modern clouds and data center networks for traffic engineering, network diagnosis, network intrusion detection, which need diverse traffic statistics ranging fromflow size distributions to heavy hitters. To cope with increasing network rates and massive traffic volumes, sketch based approximate measurement has been extensively studied to trade the accuracy for memory and computation cost, which unfortunately, is sensitive to hash collisions. In addition, deploying the sketch involves fine-grained performance control and instrumentation. This paper presents a locality-sensitive sketch (LSS) to be resilient to hash collisions. LSS proactively minimizes the estimation error due to hash collisions with an autoencoder based optimization model, and reduces the estimation variance by keeping similar network flows to the same bucket array. To illustrate the feasibility of the sketch, we develop a disaggregatedmonitoring application that supports non-intrusive sketching deployment and native network-wide analysis. Testbed shows that the framework adapts to line rates and provides accurate query results. Real-world trace-driven simulations show that LSS remains stable performance underwide ranges of parameters and dramatically outperforms state-of-the-art sketching structures, with over 103 to 105 times reduction in relative errors for per-flow queries as the ratio of the number of buckets to the number of network flows reduces from 10% to 0.1%. Copyright © 2019, The Authors. All rights reserved.

关键词： Intrusion detection

Deep learning-based age estimation using B-mode ultrasound tongue imaging

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The Journal of the Acoustical Society of America 2021年第4_SUPPLEMENT期150卷 A190-A190页

作者： Kele Xu Tamás G. Csapó Ming Feng National Key Lab. of Parallel and Distributed Processing (PDL) 107 Yanwachi Changsha 410073 China kelele.xu@*** Budapest Univ. of Technol. and Economics Budapest Hungary Tongji Univ. Shanghai China

The feasibility of age estimation is explored using the ultrasound tongue image of the speakers. Motivated by the success of deep learning, a deep convolutional neural network model is trained on the UltraSuite dataset. The deep model achieves mean absolute error (MAE) of 2.03 years for the data from typically developing children, while MAE is 4.87 for the data from the children with speech sound disorders, which suggest that age estimation using ultrasound is more challenging for the children with speech sound disorder. Also, we explore to visualize what does the deep model learn for the age estimation task. We firstly visualize the convolutional layers in the learned convolutional neural networks. We observe that the deep model not only focuses on the contour in the ultrasound tongue image, but also pays more attention to the regions corresponding to the tendon and tongue root regions, which may provide guidance for future ultrasound tongue imaging interpretation tasks. The developed method can be used a tool to evaluate the performance of speech therapy sessions.

关键词：

Denoising convolutional autoencoder based B-mode ultrasound tongue image feature extraction

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arXiv 2019年

作者： Li, Bo Xu, Kele Feng, Dawei Mi, Haibo Wang, Huaimin Zhu, Jian Beijing University of Posts and Telecommunications Automation Dept. Beijing100876 China National Key Lab of Parallel and Distributed Processing Changsha China National University of Defense Technology Changsha China Department of Linguistics University of Michigan Ann Arbor United States

B-mode ultrasound tongue imaging is widely used in the speech production field. However, efficient interpretation is in a great need for the tongue image sequences. Inspired by the recent success of unsupervised deep learning approach, we explore unsupervised convolutional network architecture for the feature extraction in the ultrasound tongue image, which can be helpful for the clinical linguist and phonetics. By quantitative comparison between different unsupervised feature extraction approaches, the denoising convolutional autoencoder (DCAE)-based method outperforms the other feature extraction methods on the reconstruction task and the 2010 silent speech interface challenge. A Word Error Rate of 6.17% is obtained with DCAE, compared to the state-of-the-art value of 6.45% using Discrete cosine transform as the feature extractor. Our codes are available at https://***/DeePBluE666/Source-code1. Copyright © 2019, The Authors. All rights reserved.

关键词： Feature extraction

Correction to: A compressed matrix sequence method for solving normal equations of bundle adjustment

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Machine Vision and Applications 2021年第4期32卷 1-1页

作者： Peng, Jiaxin Liu, Jie Wei, Hua Laboratory of Software Engineering for Complex Systems School of Computer Science National University of Defense Technology Changsha China Parallel and Distributed Processing Laboratory School of Computer Science National University of Defense Technology Changsha China Algorithm Lab Changsha Morale Network Technology Co. Ltd. Changsha China Water and Land Resources Research Center of the Middle Reaches of Yangtze River School of Resources Environment Science and Engineering Hubei University of Science and Technology Xianning China

A correction to this paper has been published: https://***/10.1007/s00138-021-01222-5

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Efficient parallel implementation of a density peaks clustering algorithm on graphics processing unit

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Frontiers of Information Technology & Electronic Engineering 2017年第7期18卷 915-927页

作者： Ke-shi GE Hua-you SU Dong-sheng LI Xi-cheng LU National Lab for Parallel and Distributed Processing College of Computer National University of Defense Technology Changsha 410003 China

The density peak （DP） algorithm has been widely used in scientific research due to its novel and effective peak density-based clustering approach. However, the DP algorithm uses each pair of data points several times when determining cluster centers, yielding high computational complexity. In this paper, we focus on accelerating the time-consuming density peaks algorithm with a graphics processing unit （GPU）. We analyze the principle of the algorithm to locate its computational bottlenecks, and evaluate its potential for parallelism. In light of our analysis, we propose an efficient parallel DP algorithm targeting on a GPU architecture and implement this parallel method with compute unified device architecture （CUDA）, called the ‘CUDA-DP platform＇. Specifically, we use shared memory to improve data locality, which reduces the amount of global memory access. To exploit the coalescing accessing mechanism of CPU, we convert the data structure of the CUDA-DP program from array of structures to structure of arrays. In addition, we introduce a binary search-and-sampling method to avoid sorting a large array. The results of the experiment show that CUDA-DP can achieve a 45-fold acceleration when compared to the central processing unit based density peaks implementation.

关键词： Density peak Graphics processing unit parallel computing Clustering

QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge

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arXiv 2024年

作者： Li, Hongwei Bran Navarro, Fernando Ezhov, Ivan Bayat, Amirhossein Das, Dhritiman Kofler, Florian Shit, Suprosanna Waldmannstetter, Diana Paetzold, Johannes C. Hu, Xiaobin Wiestler, Benedikt Zimmer, Lucas Amiranashvili, Tamaz Prabhakar, Chinmay Berger, Christoph Weidner, Jonas Alonso-Basanta, Michelle Rashid, Arif Baid, Ujjwal Adel, Wesam Alis, Deniz Baheti, Bhakti Bai, Yingbin Bhat, Ishaan Cetindag, Sabri Can Chen, Wenting Cheng, Li Dutande, Prasad Dular, Lara Elattar, Mustafa A. Feng, Ming Gao, Shengbo Huisman, Henkjan Hu, Weifeng Innani, Shubham Ji, Wei Karimi, Davood Kuijf, Hugo J. Kwak, Jin Tae Le, Hoang Long Li, Xiang Lin, Huiyan Liu, Tongliang Ma, Jun Ma, Kai Ma, Ting Oksuz, Ilkay Holland, Robbie Oliveira, Arlindo L. Pal, Jimut Bahan Pei, Xuan Qiao, Maoying Saha, Anindo Selvan, Raghavendra Shen, Linlin Silva, Joao Lourenco Spiclin, Ziga Talbar, Sanjay Wang, Dadong Wang, Wei Wang, Xiong Wang, Yin Xi, Ruiling Xu, Kele Yang, Yanwu Yergin, Mert Yu, Shuang Zeng, Lingxi Zhang, YingLin Zhao, Jiachen Zheng, Yefeng Zukovec, Martin Do, Richard Becker, Anton Simpson, Amber Konukoglu, Ender Jakab, Andras Bakas, Spyridon Joskowicz, Leo Menze, Bjoern Department of Informatics Technical University of Munich Germany Athinoula A. Martinos Center for Biomedical Imaging Massachusetts General Hospital Harvard Medical School United States Department of Quantitative Biomedicine University of Zurich Switzerland University Children’s Hospital Zurich University of Zurich Switzerland Department of Radioncology and Radiation Theraphy Klinikum rechts der Isar Technical University of Munich Germany Department of Information Technology and Electrical Engineering ETH-Zurich Switzerland Department of Radiology Memorial Sloan Kettering Cancer Center New York City United States Department of Biomedical and Molecular Sciences Queen’s University Canada TranslaTUM - Central Institute for Translational Cancer Research Technical University of Munich Germany McGovern Institute Massachusetts Institute of Technology United States Institute for Diagnostic and Interventional Radiology Unveristy Zurich Hospital Switzerland BioMedIA Imperial College London United Kingdom Department of Radiation Oncology University of Pennsylvania PA United States University of Pennsylvania PA United States Department of Radiation Oncology Winship Cancer Institute of Emory University Georgia United States Nile University Cairo Egypt Department of Medical Sciences Acibadem University Istanbul Turkey Shri Guru Gobind Singhji Institute of Engineering and Technology Maharashtra Nanded India Trustworthy Machine Learning Lab University of Sydney Australia Image Sciences Institute University Medical Center Utrecht Netherlands Computer Engineering Department Istanbul Technical University Istanbul Turkey School of Computer Science Shenzhen University Shenzhen China University of Alberta United States University of Ljubljana Faculty of Electrical Engineering Ljubljana Slovenia Tongji University Shanghai China OPPO Research Institute Shanghai China School of Biological and Medical Engineering Beihang University Beijing China Harvard Medical School Boston

Uncertainty in medical image segmentation tasks, especially inter-rater variability, arising from differences in interpretations and annotations by various experts, presents a significant challenge in achieving consistent and reliable image segmentation. This variability not only reflects the inherent complexity and subjective nature of medical image interpretation but also directly impacts the development and evaluation of automated segmentation algorithms. Accurately modeling and quantifying this variability is essential for enhancing the robustness and clinical applicability of these algorithms. We report the set-up and summarize the benchmark results of the Quantification of Uncertainties in Biomedical Image Quantification Challenge (QUBIQ), which was organized in conjunction with International Conferences on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2020 and 2021. The challenge focuses on the uncertainty quantification of medical image segmentation which considers the omnipresence of inter-rater variability in imaging datasets. The large collection of images with multi-rater annotations features various modalities such as MRI and CT;various organs such as the brain, prostate, kidney, and pancreas;and different image dimensions 2D-vs-3D. A total of 24 teams submitted different solutions to the problem, combining various baseline models, Bayesian neural networks, and ensemble model techniques. The obtained results indicate the importance of the ensemble models, as well as the need for further research to develop efficient 3D methods for uncertainty quantification methods in 3D segmentation tasks. © 2024, CC BY-NC-ND.

关键词： Image segmentation