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International Conference on Computers, Communications, and Systems (ICCCS)

作者： Runhua Li Jie Liu Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha China

Innovations in powerful high-performance computing (HPC) architecture are enabling high-fidelity whole-core neutron transport simulations at reasonable time. Especially, the currently fashionable heterogeneous architectures make the cost of such simulations at very low level. Neutron distribution of a reactor core is governed by the Boltzmann neutron transport equation (BTE), first viable solutions of which need tremendous computer resources. Among of the high-fidelity numerical methods, the discrete ordinates method (SN) is becoming popular in the reaction design community by taking a good balance between computational cost and accuracy. Recently, MT-3000, which is a multizone heterogeneous architecture with a peak double precision performance of 11.6 TFLOPS, is proposed. In this work, the BTE is solved by the SN with heterogenous Koch-Baker-Alcouffe (KBA) parallel algorithms based on the MT-3000 architecture. A communication mechanism has been established to efficiently transmit data among the acceleration cores and the CPU cores. The kernel computation procedure is largely accelerated by the vectorization and instruction pipelining techniques. Numerical experiments show that our formulation could achieve 1.37 TFLOPs with single MT-3000, that is 11.8% of its peak performance.

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DPSS: Dynamic Parameter Selection for Outlier Detection on Data Streams

DPSS: Dynamic Parameter Selection for Outlier Detection on D...

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International Conference on parallel and distributed Systems (ICPADS)

作者： Ruyi Zhang Yijie Wang Haifang Zhou Bin Li Hongzuo Xu Science and Technology on Parallel and Distributed Processing Laboratory College of Computer National University of Defense Technology

Outlier detection on data streams identifies unusual states to sense and alarm potential risks and faults of the target systems in both the cyber and physical world. As different parameter settings of machine learning algorithms can result in dramatically different performance, automatic parameter selection is also of great importance in deploying outlier detection algorithms in data streams. However, current canonical parameter selection methods suffer from two key challenges: (i) Data streams generally evolve over time, but these existing methods use a fixed training set, which fails to handle this evolving environment and often results in suboptimal parameter recommendations; (ii) The stream is infinite, and thus any parameter selection method taking the entire stream as input is infeasible. In light of these limitations, this paper introduces a Dynamic Parameter Selection method for outlier detection on data Streams (DPSS for short). DPSS uses Gaussian process regression to model the relationship between parameters and detecting performance and uses Bayesian optimization to explore the optimal parameter setting. For each new subsequence, DPSS updates the recommended parameter setting to suit the evolving characteristics. Besides, DPSS only uses historical calculations to guide the parameter setting sampling and adjust the Gaussian process regression results. DPSS can be employed as an auxiliary plug-in tool to improve the detection performance of outlier detection methods. Extensive experiments show that our method can significantly improve the F-score of outlier detectors in data streams compared to its counterparts and obtains more superior parameter selection performance than other state-of the-art parameter selection approaches. DPSS also achieves better time and memory efficiency compared to competitors.

关键词： Training Fault diagnosis Machine learning algorithms Memory management Gaussian processes Detectors Bayes methods

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3DMeshNet: A Three-Dimensional Differential Neural Network for Structured Mesh Generation

arXiv

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arXiv 2024年

作者： Peng, Jiaming Chen, Xinhai Liu, Jie Laboratory of Digitizing Software for Frontier Equipment Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha410073 China

Mesh generation is a crucial step in numerical simulations, significantly impacting simulation accuracy and efficiency. However, generating meshes remains time-consuming and requires expensive computational resources. In this paper, we propose a novel method, 3DMeshNet, for three-dimensional structured mesh generation. The method embeds the meshing-related differential equations into the loss function of neural networks, formulating the meshing task as an unsupervised optimization problem. It takes geometric points as input to learn the potential mapping between parametric and computational domains. After suitable offline training, 3DMeshNet can efficiently output a three-dimensional structured mesh with a user-defined number of quadrilateral/hexahedral cells through the feed-forward neural prediction. To enhance training stability and accelerate convergence, we integrate loss function reweighting through weight adjustments and gradient projection alongside applying finite difference methods to streamline derivative computations in the loss. Experiments on different cases show that 3DMeshNet is robust and fast. It outperforms neural network-based methods and yields superior meshes compared to traditional mesh partitioning methods. 3DMeshNet significantly reduces training times by up to 85% compared to other neural network-based approaches and lowers meshing overhead by 4 to 8 times relative to traditional meshing methods. Copyright © 2024, The Authors. All rights reserved.

关键词： Mesh generation

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Improving the Performance of Lattice Boltzmann Method with Pipelined Algorithm on A Heterogeneous Multi-zone Processor 23rd

Improving the Performance of Lattice Boltzmann Method with...

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23rd International Conference on parallel and distributed Computing, Applications, and Technologies, PDCAT 2022

作者： Zhang, Qingyang Xu, Lei Chen, Rongliang Chen, Lin Chen, Xinhai Wang, Qinglin Liu, Jie Yang, Bo Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha410000 China Laboratory of Software Engineering for Complex Systems National University of Defense Technology Changsha410000 China Shenzhen Institutes of Advanced Technology Chinese Academy of Sciences Shenzhen518055 China

ISBN: (纸本)9783031299261

Lattice Boltzmann method (LBM) has become a powerful method in computational fluid dynamics and has drawn more and more attention in high-performance computing due to its particulate nature and local dynamics, especially on recent multi-core or many-core platforms. This paper develops a parallel software framework for 3D LBM simulation on a heterogeneous multi-zone processor, MT-3000. An improved pipelined algorithm named Pencil-H is proposed, which can not only fully exploit the advantages of each component of MT-3000 but also overlap the time of calculation and communication. Moreover, an architecture-aware multi-level parallelization algorithm is developed to fully utilize the computational performance of MT-3000. A benchmark test is performed to verify the reliability and test the performance of the LBM code. Experimental results show that the optimized code achieves a 32.02 × speedup compared with using 16 CPU cores and achieves a performance of 286.03MLUPS which reaches 72.3% of the theoretical peak performance. © 2023, The Author(s), under exclusive license to Springer Nature Switzerland AG.

关键词： Computational fluid dynamics

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Prophet: Fine-grained Load Balancing for parallel Training of Large-scale MoE Models

Prophet: Fine-grained Load Balancing for Parallel Training o...

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IEEE International Conference on Cluster Computing

作者： Wei Wang Zhiquan Lai Shengwei Li Weijie Liu Keshi Ge Yujie Liu Ao Shen Dongsheng Li National Laboratory for Parallel and Distributed Processing(PDL) College Of Computer National University Of Defense Technology Changsha China

Mixture of Expert (MoE) has received increasing attention for scaling DNN models to extra-large size with negligible increases in computation. The MoE model has achieved the highest accuracy in several domains. However, a significant load imbalance occurs in the device during the training of a MoE model, resulting in significantly reduced throughput. Previous works on load balancing either harm model convergence or suffer from high execution overhead. To address these issues, we present Prophet: a fine-grained load balancing method for parallel training of large-scale MoE models, which consists of a planner and a scheduler. Prophet planner first employs a fine-grained resource allocation method to determine the possible scenarios for the expert placement in a fine-grained manner, and then efficiently searches for a well-balanced expert placement to balance the load without introducing additional overhead. Prophet scheduler exploits the locality of the token distribution to schedule the resource allocation operations using a layer-wise fine-grained schedule strategy to hide their overhead. We conduct extensive experiments in four clusters and five representative models. The results indicate that Prophet gains up to 2.3x speedup compared to the state-of-the-art MoE frameworks including Deepspeed-MoE and FasterMoE. Additionally, Prophet achieves a load balancing enhancement of up to 12.06x when compared to FasterMoE.

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Prediction of the Cyanobacteria Coverage in Time-series Images based on Convolutional Neural Network 21

Prediction of the Cyanobacteria Coverage in Time-series Imag...

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4th International Conference on Control and Computer Vision, ICCCV 2021

作者： Ye, Xiangyu Lai, Zhiquan Li, Dongsheng National Key Laboratory of Parallel and Distributed Processing Computer College National University of Defense Technology China

ISBN: (纸本)9781450390477

In recent years, the problem of lake eutrophication has become increasingly severe. The monitoring and control of cyanobacteria in lakes are of great significance. The information obtained by existing monitoring methods is relatively lagging, and it is impossible to monitor the sudden outbreak of cyanobacteria in time. Getting cyanobacteria information directly through camera images is a breakthrough. In this paper, after analyzing the characteristics of time series cyanobacteria images, we propose a block prediction scheme based on the CNN model. Experiments show that this method can quickly calculate the coverage of cyanobacteria in the monitoring image in a short time. It can also effectively distinguish cyanobacteria-rich water areas, which significantly facilitates water quality monitoring and cyanobacteria management. We can draw a chart of the changes in the coverage of cyanobacteria by analyzing multi-day time-series images. The chart helps us conduct a short-term water quality analysis to better deal with the outbreak of cyanobacteria. © 2021 ACM.

关键词： Lakes

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An unsupervised deep learning framework for gene regulatory network inference from single-cell expression data

An unsupervised deep learning framework for gene regulatory ...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Guo Mao Jie Liu Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha China Laboratory of Software Engineering for Complex System National University of Defense Technology Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha China

Recent advances in single-cell RNA sequencing (scRNA-seq) technology provides unprecedented opportunities for reconstruction gene regulation networks (GRNs). At present, many different models have been proposed to infer GRN from a large number of RNA-seq data, but most deep learning models use a priori gene regulatory network to infer potential GRNs. It is a challenge to reconstruct GRNs from scRNA-seq data due to the noise and sparsity introduced by the dropout effect. Here, we propose GAALink, a novel unsupervised deep learning method. It first constructs the gene similarity matrix and then refines it by threshold value. It then learns feature representations of genes through a graphical attention autoencoder that propagates information across genes with different weights. Finally, we use gene feature expression for matrix completion such that the GRNs are reconstructed. Compared with seven existing GRNs reconstruction methods, GAALink achieves more accurate performance on seven scRNA-seq dataset with four ground truth networks. GAALink can provide a useful tool for inferring GRNs for scRNA-seq expression data.

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Offline Imitation Learning Using Reward-free Exploratory Data 5

Offline Imitation Learning Using Reward-free Exploratory Dat...

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5th International Conference on Algorithms, Computing and Artificial Intelligence, ACAI 2022

作者： Wang, Hao Feng, Dawei Ding, Bo Li, Wei College of Computer National University of Defense Technology Changsha Hunan China National Laboratory for Parallel and Distributed Processing National University of Defense Technology Changsha China Independent Researcher GuangZhou China

ISBN: (纸本)9781450398343

Offline imitative learning(OIL) is often used to solve complex continuous decision-making tasks. For these tasks such as robot control, automatic driving and etc., it is either difficult to design an effective reward for learning or very expensive and time-consuming for agents to collect data interactively with the environment. However, the data used in previous OIL methods are all gathered by reinforcement learning algorithms guided by task-specific rewards, which is not a true reward-free premise and still suffers from the problem of designing an effective reward function in real tasks. To this end, we propose the reward-free exploratory data driven offline imitation learning (ExDOIL) framework. ExDOIL first trains an unsupervised reinforcement learning agent by interacting with the environment, and collects enough unsupervised exploration data during training;Then, a task independent yet simple and efficient reward function is used to relabel the collected data;Finally, an agent is trained to imitate the expert to complete the task through a conventional RL algorithm such as TD3. Extensive experiments on continuous control tasks demonstrate that the proposed framework can achieve better imitation performance(28% higher episode returns on average) comparing with previous SOTA method(ORIL) without any task-specific rewards. © 2022 ACM.

关键词： Reinforcement learning

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Representation learning on textual network with personalized Page Rank

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Science China(Information Sciences) 2021年第11期64卷 95-104页

作者： Teng LI Yong DOU National Laboratory for Parallel and Distributed Processing National University of Defense Technology

Representation learning on textual network or textual network embedding, which leverages rich textual information associated with the network structure to learn low-dimensional embedding of vertices, has been useful in a variety of tasks. However, most approaches learn textual network embedding by using direct neighbors. In this paper, we employ a powerful and spatially localized operation: personalized Page Rank(PPR) to eliminate the restriction of using only the direct connection relationship. Also, we analyze the relationship between PPR and spectral-domain theory, which provides insight into the empirical performance boost. From the experiment, we discovered that the proposed method provides a great improvement in linkprediction tasks, when compared to existing methods, achieving a new state-of-the-art on several real-world benchmark datasets.

关键词： representation learning network embedding PageRank textual network personalized PageRank

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parallelization of Fast Monte Carlo Dose Calculation for Radiotherapy Treatment Planning on the ARMv8 Architecture 11

Parallelization of Fast Monte Carlo Dose Calculation for Rad...

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11th International Conference on Information Science and Technology, ICIST 2021

作者： Jin, Chi Wang, Qinglin Zhao, Yang Dou, Yong National University of Defense Technology Science and Technology on Parallel and Distributed Processing Laboratory Changsha China

ISBN: (纸本)9781665412667

Monte Carlo (MC) simulation plays a key role in radiotherapy. Since the simulation time of the MC program cannot fully meet the clinical requirements, we use the ARM-based FT-2000+ multi-core processor for parallelization, which provides an effective solution for accelerating MC dose calculation. In this paper, we implement and verify FT-DPM, which is an OpenMP-based MC Dose Planning Method on FT-2000+. FT-DPM utilizes the parallelism of MC simulation and the advantage of ARM architecture to achieve the parallelization on ARM architecture. Meanwhile, we optimize the original DPM program in terms of memory allocation, data structure and data type. The experiments show that, compared with the original DPM code, FT-DPM obtains very accurate results and reaches the maximum speedups of 155.94 times for the electron case. The parallel program based on FT-2000+ only takes 44.1 seconds to simulate the particle transport of 100 million times, showing good clinical application potential. In addition, the speedup and efficiency of FT-DPM running on different core counts are also discussed. © 2021 IEEE.

关键词： Application programs

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