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International Conference on Information Systems and computer Aided Education (ICISCAE)

作者： Haoduo Yang Huayou Su Mei Wen Chunyuan Zhang Department of Computer National University of Defense Technology Changsha China National Key Laboratory for Parallel and Distributed Processing National University of Defense Technology Changsha China

ISBN: (纸本)9781538657393;9781538657386

In recent years, the rapidly growing use of graphs has sparked parallel graph analytics frameworks for leveraging the massive hardware resources, specifically graphics processing units (GPUs). However, the issues of the unpredictable control flows, memory divergence, and the complexity of programming have restricted high-level GPU graph libraries. In this work, we present HPGA, a high performance parallel graph analytics framework targeting the GPU. HPGA implements an abstraction which maps vertex programs to generalized sparse matrix operations on GPUs for delivering high performance. HPGA incorporates high-performance GPU computing primitives and optimization strategies with a high-level programming model. We evaluate the performance of HPGA for three graph primitives (BFS, SSSP, PageRank) with large-scale datasets. The experimental results show that HPGA matches or even exceeds the performance of MapGraph and nvGRAPH, two state-of-the-art GPU graph libraries.

关键词： Graphics processing units Sparse matrices Programming Computational modeling Arrays Optimization

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Meeting deadlines for approximation processing in MapReduce environments

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Frontiers of Information Technology & Electronic Engineering 2017年第11期18卷 1754-1772页

作者： Ming-hao HU Chang-jian WANG Yu-xing PENG National Laboratory for Parallel and Distributed Processing School of Computer National University of Defense Technology Changsha 410073 China

To provide timely results for big data analytics, it is crucial to satisfy deadline requirements for MapReduce jobs in today＇s production environments. Much effort has been devoted to the problem of meeting deadlines, and typically there exist two kinds of solutions. The first is to allocate appropriate resources to complete the entire job before the specified time limit, where missed deadlines result because of tight deadline constraints or lack of resources; the second is to run a pre-constructed sample based on deadline constraints, which can satisfy the time requirement but fail to maximize the volumes of processed data. In this paper, we propose a deadline-oriented task scheduling approach, named ＇Dart＇, to address the above problem. Given a specified deadline and restricted resources, Dart uses an iterative estimation method, which is based on both historical data and job running status to precisely estimate the real-time job completion time. Based on the estimated time, Dart uses an approach-revise algorithm to make dynamic scheduling decisions for meeting deadlines while maximizing the amount of processed data and mitigating stragglers. Dart also efficiently handles task failures and data skew, protecting its performance from being harmed. We have validated our approach using workloads from OpenCloud and Facebook on a cluster of 64 virtual machines. The results show that Dart can not only effectively meet the deadline but also process near-maximum volumes of data even with tight deadlines and limited resources.

关键词： MapReduce Approximation jobs Deadline Task scheduling Straggler mitigation

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Efficient parallel implementation of a density peaks clustering algorithm on graphics processing unit

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Frontiers of Information Technology & Electronic Engineering 2017年第7期18卷 915-927页

作者： Ke-shi GE Hua-you SU Dong-sheng LI Xi-cheng LU National Lab for Parallel and Distributed Processing College of Computer National University of Defense Technology Changsha 410003 China

The density peak （DP） algorithm has been widely used in scientific research due to its novel and effective peak density-based clustering approach. However, the DP algorithm uses each pair of data points several times when determining cluster centers, yielding high computational complexity. In this paper, we focus on accelerating the time-consuming density peaks algorithm with a graphics processing unit （GPU）. We analyze the principle of the algorithm to locate its computational bottlenecks, and evaluate its potential for parallelism. In light of our analysis, we propose an efficient parallel DP algorithm targeting on a GPU architecture and implement this parallel method with compute unified device architecture （CUDA）, called the ‘CUDA-DP platform＇. Specifically, we use shared memory to improve data locality, which reduces the amount of global memory access. To exploit the coalescing accessing mechanism of CPU, we convert the data structure of the CUDA-DP program from array of structures to structure of arrays. In addition, we introduce a binary search-and-sampling method to avoid sorting a large array. The results of the experiment show that CUDA-DP can achieve a 45-fold acceleration when compared to the central processing unit based density peaks implementation.

关键词： Density peak Graphics processing unit parallel computing Clustering

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General audio tagging with ensembling convolutional neural networks and statistical features

arXiv

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arXiv 2018年

作者： Xu, Kele Zhu, Boqing Kong, Qiuqiang Mi, Haibo Ding, Bo Wang, Dezhi Wang, Huaimin National Key Laboratory of Parallel and Distributed Processing Changsha China College of Computer National University of Defense Technology Changsha China University of Surrey United Kingdom College of Meteorology and Oceanography National Univ. of Defense Tech Changsha China

Audio tagging aims to infer descriptive labels from audio clips. Audio tagging is challenging due to the limited size of data and noisy labels. In this paper, we describe our solution for the DCASE 2018 Task 2 general audio tagging challenge. The contributions of our solution include: We investigated a variety of convolutional neural network architectures to solve the audio tagging task. Statistical features are applied to capture statistical patterns of audio features to improve the classification performance. Ensemble learning is applied to ensemble the outputs from the deep classifiers to utilize complementary information. a sample reweight strategy is employed for ensemble training to address the noisy label problem. Our system achieves a mean average precision (mAP@3) of 0.958, outperforming the baseline system of 0.704. Our system ranked the 1st and 4th out of 558 submissions in the public and private leaderboard of DCASE 2018 Task 2 challenge. Copyright © 2018, The Authors. All rights reserved.

关键词： Deep neural networks

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QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge

arXiv

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arXiv 2024年

作者： Li, Hongwei Bran Navarro, Fernando Ezhov, Ivan Bayat, Amirhossein Das, Dhritiman Kofler, Florian Shit, Suprosanna Waldmannstetter, Diana Paetzold, Johannes C. Hu, Xiaobin Wiestler, Benedikt Zimmer, Lucas Amiranashvili, Tamaz Prabhakar, Chinmay Berger, Christoph Weidner, Jonas Alonso-Basanta, Michelle Rashid, Arif Baid, Ujjwal Adel, Wesam Alis, Deniz Baheti, Bhakti Bai, Yingbin Bhat, Ishaan Cetindag, Sabri Can Chen, Wenting Cheng, Li Dutande, Prasad Dular, Lara Elattar, Mustafa A. Feng, Ming Gao, Shengbo Huisman, Henkjan Hu, Weifeng Innani, Shubham Ji, Wei Karimi, Davood Kuijf, Hugo J. Kwak, Jin Tae Le, Hoang Long Li, Xiang Lin, Huiyan Liu, Tongliang Ma, Jun Ma, Kai Ma, Ting Oksuz, Ilkay Holland, Robbie Oliveira, Arlindo L. Pal, Jimut Bahan Pei, Xuan Qiao, Maoying Saha, Anindo Selvan, Raghavendra Shen, Linlin Silva, Joao Lourenco Spiclin, Ziga Talbar, Sanjay Wang, Dadong Wang, Wei Wang, Xiong Wang, Yin Xi, Ruiling Xu, Kele Yang, Yanwu Yergin, Mert Yu, Shuang Zeng, Lingxi Zhang, YingLin Zhao, Jiachen Zheng, Yefeng Zukovec, Martin Do, Richard Becker, Anton Simpson, Amber Konukoglu, Ender Jakab, Andras Bakas, Spyridon Joskowicz, Leo Menze, Bjoern Department of Informatics Technical University of Munich Germany Athinoula A. Martinos Center for Biomedical Imaging Massachusetts General Hospital Harvard Medical School United States Department of Quantitative Biomedicine University of Zurich Switzerland University Children’s Hospital Zurich University of Zurich Switzerland Department of Radioncology and Radiation Theraphy Klinikum rechts der Isar Technical University of Munich Germany Department of Information Technology and Electrical Engineering ETH-Zurich Switzerland Department of Radiology Memorial Sloan Kettering Cancer Center New York City United States Department of Biomedical and Molecular Sciences Queen’s University Canada TranslaTUM - Central Institute for Translational Cancer Research Technical University of Munich Germany McGovern Institute Massachusetts Institute of Technology United States Institute for Diagnostic and Interventional Radiology Unveristy Zurich Hospital Switzerland BioMedIA Imperial College London United Kingdom Department of Radiation Oncology University of Pennsylvania PA United States University of Pennsylvania PA United States Department of Radiation Oncology Winship Cancer Institute of Emory University Georgia United States Nile University Cairo Egypt Department of Medical Sciences Acibadem University Istanbul Turkey Shri Guru Gobind Singhji Institute of Engineering and Technology Maharashtra Nanded India Trustworthy Machine Learning Lab University of Sydney Australia Image Sciences Institute University Medical Center Utrecht Netherlands Computer Engineering Department Istanbul Technical University Istanbul Turkey School of Computer Science Shenzhen University Shenzhen China University of Alberta United States University of Ljubljana Faculty of Electrical Engineering Ljubljana Slovenia Tongji University Shanghai China OPPO Research Institute Shanghai China School of Biological and Medical Engineering Beihang University Beijing China Harvard Medical School Boston

Uncertainty in medical image segmentation tasks, especially inter-rater variability, arising from differences in interpretations and annotations by various experts, presents a significant challenge in achieving consistent and reliable image segmentation. This variability not only reflects the inherent complexity and subjective nature of medical image interpretation but also directly impacts the development and evaluation of automated segmentation algorithms. Accurately modeling and quantifying this variability is essential for enhancing the robustness and clinical applicability of these algorithms. We report the set-up and summarize the benchmark results of the Quantification of Uncertainties in Biomedical Image Quantification Challenge (QUBIQ), which was organized in conjunction with International Conferences on Medical Image Computing and computer-Assisted Intervention (MICCAI) 2020 and 2021. The challenge focuses on the uncertainty quantification of medical image segmentation which considers the omnipresence of inter-rater variability in imaging datasets. The large collection of images with multi-rater annotations features various modalities such as MRI and CT;various organs such as the brain, prostate, kidney, and pancreas;and different image dimensions 2D-vs-3D. A total of 24 teams submitted different solutions to the problem, combining various baseline models, Bayesian neural networks, and ensemble model techniques. The obtained results indicate the importance of the ensemble models, as well as the need for further research to develop efficient 3D methods for uncertainty quantification methods in 3D segmentation tasks. © 2024, CC BY-NC-ND.

关键词： Image segmentation

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Deep Discriminative Clustering Network

Deep Discriminative Clustering Network

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International Joint Conference on Neural Networks

作者： Xuying Shao Keshi Ge Huayou Su Lei Luo Baoyun Peng Dongsheng Li Science and Technology on Parallel and Distributed Laboratory National University of Defense Technology Changsha China College of Computer National University of Defense Technology Changsha China

Deep clustering aims to cluster unlabeled data by embedding them into a subspace based on deep model. The key challenge of deep clustering is to learn discriminative representations for input data with high dimensions. In this paper, we present a deep discriminative clustering network for clustering the real-world images. We use a convolutional auto-encoder stacked with a softmax layer to predict clustering assignments. To learn a discriminative representations, the proposed approach adds discriminative loss as embedded regularization with relative entropy minimization. With the discriminative loss, the network can not only produce clustering assignments, but also learn discriminative features by reducing intra-cluster distance and increasing inter-cluster distance. We evaluate the proposed method on three datasets: MNIST-full, YTF and FRGC-v2.0. We outperform state-of-the-art results on MNIST-full and FRGC-v2.0 and achieve competitive result on YTF. The source code has been made publicly available at .

关键词： Machine learning Clustering algorithms Image reconstruction Linear programming Clustering methods Neural networks Task analysis

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FD-MOBILENET: IMPROVED MOBILENET WITH A FAST DOWNSAMPLING STRATEGY

FD-MOBILENET: IMPROVED MOBILENET WITH A FAST DOWNSAMPLING ST...

引用

IEEE International Conference on Image processing

作者： Zheng Qin Zhaoning Zhang Xiaotao Chen Changjian Wang Yuxing Peng Science and Technology on Parallel and Distributed Laboratory National University of Defense Technology Changsha China College of Computer National University of Defense Technology Changsha China

We present Fast-Downsampling MobileNet (FD-MobileNet), an efficient and accurate network for very limited computational budgets (e.g., 10-140 MFLOPs). Our key idea is applying a fast down-sampling strategy to MobileNet framework. In FD-MobileNet, we perform 32× downsampling within 12 layers, only half the layers in the original MobileNet. This design brings three advantages: (i) It remarkably reduces the computational cost. (ii) It increases the information capacity and achieves significant performance improvements. (iii) It is engineering-friendly and provides fast actual inference speed. Experiments on ILSVRC 2012 and PASCAL VOC datasets demonstrate that FD-MobileNet consistently outperforms MobileNet and achieves comparable results with ShuffleNet under different computational budgets, for instance, surpassing Mobile-Net by 5.5% on the ILSVRC 2012 top-1 accuracy and 8.3% on the VOC 2007 mAP under a complexity of 12 MFLOPs. On an ARM-based device, FD-MobileNet achieves 1.11× inference speedup over MobileNet and 1.82× over ShuffleNet under the same complexity.

关键词： computer architecture Complexity theory Neural networks Training Hardware Computational modeling Standards

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Determinants of pull-based development in the context of continuous integration

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Science China(Information Sciences) 2016年第8期59卷 53-66页

作者： Yue YU Gang YIN Tao WANG Cheng YANG Huaimin WANG College of Computer National University of Defense Technology National Laboratory for Parallel and Distributed Processing

The pull-based development model, widely used in distributed software teams on open source communities, can efficiently gather the wisdom from crowds. Instead of sharing access to a central repository,contributors create a fork, update it locally, and request to have their changes merged back, i.e., submit a pull-request. On the one hand, this model lowers the barrier to entry for potential contributors since anyone can submit pull-requests to any repository, but on the other hand it also increases the burden on integrators, who are responsible for assessing the proposed patches and integrating the suitable changes into the central repository. The role of integrators in pull-based development is crucial. They must not only ensure that pull-requests should meet the project’s quality standards before being accepted, but also finish the evaluations in a timely manner. To keep up with the volume of incoming pull-requests, continuous integration(CI) is widely adopted to automatically build and test every pull-request at the time of submission. CI provides extra evidences relating to the quality of pull-requests, which would help integrators to make final decision(i.e., accept or reject). In this paper, we present a quantitative study that tries to discover which factors affect the process of pull-based development model, including acceptance and latency in the context of CI. Using regression modeling on data extracted from a sample of Git Hub projects deploying the Travis-CI service, we find that the evaluation process is a complex issue, requiring many independent variables to explain adequately. In particular, CI is a dominant factor for the process, which not only has a great influence on the evaluation process per se, but also changes the effects of some traditional predictors.

关键词： pull-request continuous integration Git Hub distributed software development empirical analysis

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Exploiting contention and congestion aware switch allocation in network-on-chips 17

Exploiting contention and congestion aware switch allocation...

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50th ACM Turing Conference - China, ACM TUR-C 2017

作者： Li, Cunlu Dongy, Dezun Liao, Xiangke National Laboratory for Parallel and Distributed Processing Collaborative Innovation Center of High Performance Computing College of Computer National University of Defense Technology Changsha Hunan410073 China

ISBN: (纸本)9781450348737

Network-on-chip system plays an important role to improve the performance of chip multiprocessor systems. As the complexity of the network increases, congestion problem has become the major performance bottleneck and seriously influence the performance of NoCs. Prior works have focused on designing effective routing algorithm based on collecting congestion and contention information to load balance the traffic. However, most prior works do not consider balancing the traffic load during switch allocation. Due to the lack of congestion information in switch allocation stage, switch allocator performs allocation only based on packet requests and thus aggravates the congestion in the ports of switch. In this paper, we propose to add the congestion and contention information into the switch allocation process and design an efficient on-chip switching strategy which utilizes the contention and congestion information to load balance the traffic and achieve efficient switch allocation. To further enhance the performance of our design, we carefully design our switch allocation strategy to balance the trade-off between traffic load balance and the matching efficiency in switch allocation. We evaluate our design under synthetic traffic and trace of parsec benchmarks. Our evaluations show this mechanism achieves optimal latency compared to best previous switch allocation strategies. © 2017 ACM.

关键词： Network-on-chip

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A systematic review of structured sparse learning

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Frontiers of Information Technology & Electronic Engineering 2017年第4期18卷 445-463页

作者： Lin-bo QIAO Bo-feng ZHANG Jin-shu SU Xi-cheng LU College of Computer National University of Defense Technology Changsha 410073 China National Laboratory for Parallel and Distributed Processing National University of Defense Technology Changsha 410073 China

High-dimensional data arising from diverse scientific research fields and industrial development have led to increased interest in sparse learning due to model parsimony and computational advantage. With the assumption of sparsity, many computational problems can be handled efficiently in practice. Structured sparse learning encodes the structural information of the variables and has been quite successful in numerous research fields. With various types of structures discovered, sorts of structured regularizations have been proposed. These regularizations have greatly improved the efficacy of sparse learning algorithms through the use of specific structural information. In this article, we present a systematic review of structured sparse learning including ideas, formulations, algorithms, and applications. We present these algorithms in the unified framework of minimizing the sum of loss and penalty functions, summarize publicly accessible software implementations, and compare the computational complexity of typical optimization methods to solve structured sparse learning problems. In experiments, we present applications in unsupervised learning, for structured signal recovery and hierarchical image reconstruction, and in supervised learning in the context of a novel graph-guided logistic regression.

关键词： Sparse learning Structured sparse learning Structured regularization

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