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arXiv 2022年

作者： Sarhan, Injy Mosteiro, Pablo Spruit, Marco Department of Information and Computing Sciences Utrecht University Netherlands Arab Academy for Science Technology Maritime Transport Egypt Department of Public Health and Primary Care Leiden University Medical Center Netherlands Leiden Institute of Advanced Computer Science Leiden University Netherlands

This paper presents our strategy to address the SemEval-2022 Task 3 PreTENS: Presupposed Taxonomies Evaluating Neural Network Semantics. The goal of the task is to identify if a sentence is deemed acceptable or not, depending on the taxonomic relationship that holds between a noun pair contained in the sentence. For sub-task 1—binary classification—we propose an effective way to enhance the robustness and the generalizability of language models for better classification on this downstream task. We design a two-stage fine-tuning procedure on the ELECTRA language model using data augmentation techniques. Rigorous experiments are carried out using multi-task learning and data-enriched fine-tuning. Experimental results demonstrate that our proposed model, UU-Tax, is indeed able to generalize well for our downstream task. For sub-task 2—regression—we propose a simple classifier that trains on features obtained from Universal Sentence Encoder (USE). In addition to describing the submitted systems, we discuss other experiments that employ pre-trained language models and data augmentation techniques. For both sub-tasks, we perform error analysis to further understand the behaviour of the proposed models. We achieved a global F1Binary score of 91.25% in sub-task 1 and a rho score of 0.221 in sub-task 2.1 © 2022, CC BY.

关键词： Taxonomies

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Scalable flux controllers using adiabatic superconductor logic for quantum processors

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Physical Review Research 2023年第1期5卷 013145-013145页

作者： Naoki Takeuchi Taiki Yamae Wenhui Luo Fuminori Hirayama Tsuyoshi Yamamoto Nobuyuki Yoshikawa Research Center for Emerging Computing Technologies National Institute of Advanced Industrial Science and Technology (AIST) Tsukuba Ibaraki 305-8568 Japan NEC-AIST Quantum Technology Cooperative Research Laboratory National Institute of Advanced Industrial Science and Technology (AIST) Tsukuba Ibaraki 305-8568 Japan Department of Electrical and Computer Engineering Yokohama National University Yokohama Kanagawa 240-8501 Japan Research Fellow of Japan Society for the Promotion of Science Chiyoda Tokyo 102-0083 Japan Secure System Platform Research Laboratories NEC Corporation Kawasaki Kanagawa 211-0011 Japan Institute of Advanced Sciences Yokohama National University Yokohama Kanagawa 240-8501 Japan

Quantum processors have the potential to accelerate specific computing tasks but are difficult to scale up due to engineering limitations, such as the number of available cables and cooling power for dilution refrigerators for quantum bits (qubits). Hence, it is very important to develop scalable, energy-efficient interface circuits that can control many qubits via a few control lines inside a dilution refrigerator. One of the most important interface circuits is the flux controller (FC), which generates arbitrary dc flux bias to adjust the characteristics of component devices such as qubits. In this paper, we propose and demonstrate FCs using an energy-efficient superconductor logic family, adiabatic quantum-flux-parametron (AQFP) logic. We develop two types of FCs: the AQFP FC and the AQFP/single-flux-quantum (AQFP/SFQ) FC. Both FCs require only a few control lines and have extremely small power dissipation, thus exhibiting high scalability. Furthermore, the AQFP/SFQ FC can control flux bias using ballistic SFQ transmission, which is crucial for integration with qubits. As a proof of concept, we demonstrate AQFP and AQFP/SFQ FCs at 4.2 K, fabricated by the AIST high-speed standard process. Our results indicate that AQFP logic is highly suitable for use as qubit interface circuits for very large-scale quantum processors, especially from the viewpoint of the control line count, power dissipation, and amount of supply currents.

关键词： Engineering Devices for digital logic, storage & processing Josephson junctions SQUID Superconducting devices

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Adaptive Wavelet Filters as Practical Texture Feature Amplifiers for Parkinson’s Disease Screening in OCT

arXiv

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arXiv 2025年

作者： Zhang, Xiaoqing Shi, Hanfeng Li, Xiangyu Ye, Haili Xu, Tao Li, Na Hu, Yan Lv, Fan Chen, Jiangfan Liu, Jiang Center for High Performance Computing and Shenzhen Key Laboratory of Intelligent Bioinformatics Shenzhen Institute of Advanced Technology Chinese Academy of Sciences Shenzhen China Research Institute of Trustworthy Autonomous Systems Department of Computer Science and Engineering Southern University of Science and Technology Shenzhen518055 China State Key Laboratory of Ophthalmology Optometry and Vision Science Wenzhou Medical University Wenzhou China Centre for Computational Science and Mathematical Modelling Coventry University Coventry United Kingdom School of Computer Science University of Nottingham Ningbo China Ningbo315100 China School of Ophthalmology and Optometry Wenzhou Medical University Wenzhou325035 China Department of Electronic and Information Engineering Changchun University Changchun130022 China

Parkinson’s disease (PD) is a prevalent neurodegenerative disorder globally. The eye’s retina is an extension of the brain and has great potential in PD screening. Recent studies have suggested that texture features extracted from retinal layers can be adopted as biomarkers for PD diagnosis under optical coherence tomography (OCT) images. Frequency domain learning techniques can enhance the feature representations of deep neural networks (DNNs) by decomposing frequency components involving rich texture features. Additionally, previous works have not exploited texture features for automated PD screening in OCT. Motivated by the above analysis, we propose a novel Adaptive Wavelet Filter (AWF) that serves as the Practical Texture Feature Amplifier to fully leverage the merits of texture features to boost the PD screening performance of DNNs with the aid of frequency domain learning. Specifically, AWF first enhances texture feature representation diversities via channel mixer, then emphasizes informative texture feature representations with the well-designed adaptive wavelet filtering token mixer. By combining the AWFs with the DNN stem, AWFNet is constructed for automated PD screening. Additionally, we introduce a novel Balanced Confidence (BC) Loss by mining the potential of sample-wise predicted probabilities of all classes and class frequency prior, to further boost the PD screening performance and trustworthiness of AWFNet. The extensive experiments manifest the superiority of our AWFNet and BC over state-of-the-art methods in terms of PD screening performance and trustworthiness. © 2025, CC BY-NC-SA.

关键词： Neurodegenerative diseases

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DPA-2:a large atomic model as a multitask learner

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npj Computational Materials 2024年第1期10卷 185-199页

作者： Duo Zhang Xinzijian Liu Xiangyu Zhang Chengqian Zhang Chun Cai Hangrui Bi Yiming Du Xuejian Qin Anyang Peng Jiameng Huang Bowen Li Yifan Shan Jinzhe Zeng Yuzhi Zhang Siyuan Liu Yifan Li Junhan Chang Xinyan Wang Shuo Zhou Jianchuan Liu Xiaoshan Luo Zhenyu Wang Wanrun Jiang Jing Wu Yudi Yang Jiyuan Yang Manyi Yang Fu-Qiang Gong Linshuang Zhang Mengchao Shi Fu-Zhi Dai Darrin M.York Shi Liu Tong Zhu Zhicheng Zhong Jian Lv Jun Cheng Weile Jia Mohan Chen Guolin Ke Weinan E Linfeng Zhang Han Wang AI for Science Institute BeijingP.R.China DP Technology BeijingP.R.China Academy for Advanced Interdisciplinary Studies Peking UniversityBeijingP.R.China State Key Lab of Processors Institute of Computing TechnologyChinese Academy of SciencesBeijingP.R.China University of Chinese Academy of Sciences BeijingP.R.China HEDPS CAPTCollege of EngineeringPeking UniversityBeijingP.R.China Ningbo Institute of Materials Technology and Engineering Chinese Academy of SciencesNingboP.R.China CAS Key Laboratory of Magnetic Materials and Devices and Zhejiang Province Key Laboratory of Magnetic Materials and Application Technology Chinese Academy of SciencesNingboP.R.China School of Electronics Engineering and Computer Science Peking UniversityBeijingP.R.China Shanghai Engineering Research Center of Molecular Therapeutics&New Drug Development School of Chemistry and Molecular EngineeringEast China Normal UniversityShanghaiP.R.China Laboratory for Biomolecular Simulation Research Institute for Quantitative Biomedicine and Department of Chemistry and Chemical BiologyRutgers UniversityPiscatawayNJUSA Department of Chemistry Princeton UniversityPrincetonNJUSA College of Chemistry and Molecular Engineering Peking UniversityBeijingP.R.China Yuanpei College Peking UniversityBeijingP.R.China School of Electrical Engineering and Electronic Information Xihua UniversityChengduP.R.China State Key Laboratory of Superhard Materials College of PhysicsJilin UniversityChangchunP.R.China Key Laboratory of Material Simulation Methods&Software of Ministry of Education College of PhysicsJilin UniversityChangchunP.R.China International Center of Future Science Jilin UniversityChangchunP.R.China Key Laboratory for Quantum Materialsof Zhejiang Province Department of PhysicsSchool of ScienceWestlake UniversityHangzhouP.R.China Atomistic Simulations Italian Institute of TechnologyGenovaItaly State Key Laboratory of Physical Chemistry of Solid Surface iChEMCollege of Chemistry and Chemical EngineeringXiame

The rapid advancements in artificial intelligence(AI)are catalyzing transformative changes in atomic modeling,simulation,and ***-driven potential energy models havedemonstrated the capability to conduct large-scale,long-duration simulations with the accuracy of ab initio electronic structure ***,the model generation process remains a bottleneck for large-scale *** propose a shift towards a model-centric ecosystem,wherein a large atomic model(LAM),pretrained across multiple disciplines,can be efficiently fine-tuned and distilled for various downstream tasks,thereby establishing a new framework for molecular *** this study,we introduce the DPA-2 architecture as a prototype for ***-trained on a diverse array of chemical and materials systemsusing a multi-task approach,DPA-2demonstrates superior generalization capabilities across multiple downstream tasks compared to the traditional single-task pre-training and fine-tuning *** approach sets the stage for the development and broad application of LAMs in molecular and materials simulation research.

关键词： DPA establishing thereby

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Quantum Simulation of the First-Quantized Pauli-Fierz Hamiltonian

arXiv

引用

arXiv 2023年

作者： Mukhopadhyay, Priyanka Stetina, Torin F. Wiebe, Nathan Department of Physical & Environmental Sciences University of Toronto ON Canada Simons Institute for the Theory of Computing BerkeleyCA United States Berkeley Quantum Information and Computation Center University of California Berkeley United States Department of Computer Science University of Toronto ON Canada Pacific Northwest National Laboratory RichlandWA United States Canadian Institute for Advanced Research TorontoON Canada

We provide an explicit recursive divide and conquer approach for simulating quantum dynamics and derive a discrete first quantized non-relativistic QED Hamiltonian based on the many-particle Pauli Fierz Hamiltonian. We apply this recursive divide and conquer algorithm to this Hamiltonian and compare it to a concrete simulation algorithm that uses qubitization. Our divide and conquer algorithm, using lowest order Trotterization, scales for fixed grid spacing as Õ(ΛN2η2t2/ϵ) for grid size N, η particles, simulation time t, field cutoff Λ and error ϵ. Our qubitization algorithm scales as Õ(N(η + N)(η + Λ2)tlog(1/ϵ)). This shows that even a naïve partitioning and low-order splitting formula can yield, through our divide and conquer formalism, superior scaling to qubitization for large Λ. We compare the relative costs of these two algorithms on systems that are relevant for applications such as the spontaneous emission of photons, and the photoionization of electrons. We observe that for different parameter regimes, one method can be favored over the other. Finally, we give new algorithmic and circuit level techniques for gate optimization including a new way of implementing a group of multi-controlled-X gates that can be used for better analysis of circuit cost. © 2023, CC BY.

关键词： Hamiltonians

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Statistical Analysis of Intrinsic High-Frequency Characteristic Fluctuation of Emerging Silicon Gate-All-Around Nanosheet (NS) MOSFETs at Sub-3-nm Nodes

Statistical Analysis of Intrinsic High-Frequency Characteris...

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IEEE Electron Devices Technology and Manufacturing Conference (EDTM)

作者： Sekhar Reddy Kola Yiming Li Min-Hui Chuang Kazuhiko Endo Seiji Samukawa Parallel and Scientific Computing Laboratory Electrical Engineering and Computer Science International Graduate Program Institute of Communications Engineering Department of Electronics and Electrical Engineering Institute of Biomedical Engineering Center for mm Wave Smart Radar System and Technologies National Yang Ming Chiao Tung University Hsinchu Taiwan Institute of Fluid Science Tohoku University 2-1-1 Katahira Aoba-ku Sendai Japan National Institute of Advanced Industrial Science and Technology Tsukuba Japan

In recent years, the GAA NS Si MOSFET has been explored as a leading technology. However, the intrinsic parameters of GAA NS Si MOSFETs are affected to varying degrees by various fluctuation sources, Statistically independent and identically distributed $(iid)$ assumptions on the aforementioned random variables overestimate the variability of high-frequency characteristics, compared with considering all fluctuation factors simultaneously. Notably, the random nanosized metal grains dominates the variations of voltage gain, cut-off frequency, and 3dB frequency because the random work functions strongly alter the channel surface potential.

关键词： MOSFET Fluctuations Statistical analysis Gallium arsenide Cutoff frequency Metals Logic gates

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Disentangling quantum neural networks for unified estimation of quantum entropies and distance measures

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Physical Review A 2024年第6期110卷 062418-062418页

作者： Myeongjin Shin Seungwoo Lee Junseo Lee Mingyu Lee Donghwa Ji Hyeonjun Yeo Kabgyun Jeong School of Computing KAIST Daejeon 34141 South Korea Quantum AI Team Norma Inc. Seoul 04799 South Korea Department of Computer Science and Engineering Seoul National University Seoul 08826 South Korea College of Liberal Studies Seoul National University Seoul 08826 South Korea Department of Physics and Astronomy Seoul National University Seoul 08826 South Korea Research Institute of Mathematics Seoul National University Seoul 08826 South Korea School of Computational Sciences Korea Institute for Advanced Study Seoul 02455 South Korea

The estimation of quantum entropies and distance measures, such as von Neumann entropy, Rényi entropy, Tsallis entropy, trace distance, and fidelity-induced distances such as the Bures distance, has been a key area of research in quantum information science. In our study, we introduce the disentangling quantum neural network (DEQNN), designed to efficiently estimate various physical quantities in quantum information. Estimation algorithms for these quantities are generally tied to the size of the Hilbert space of the quantum state to be estimated. Our proposed DEQNN offers a unified dimensionality reduction methodology that can significantly reduce the size of the Hilbert space while preserving the values of diverse physical quantities. We provide an in-depth discussion of the physical scenarios and limitations in which our algorithm is applicable, as well as the learnability of the proposed quantum neural network.

关键词： Hilbert spaces

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Predicting Microsatellite Instability from Histology Images with Dilated Neighborhood Attention Transformer in Colorectal Cancer

Predicting Microsatellite Instability from Histology Images ...

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IEEE Symposium on Bioinformatics and Bioengineering (BIBE)

作者： Yun-Chi Chen Tung Chao Wimaya Nitya Phandita Tzu-Yu Sun Huai-Zhi Wang Yi-Hsien Hsieh Le-Yin Hsu Che Lin Graduate Institute of Biomedical Electronics and Bioinformatics National Taiwan University (NTU) Taipei Taiwan College of Bioresources and Agriculture NTU Taipei Taiwan Department of Computer Science and Information Engineering National Taiwan University of Science and Technology Taipei Taiwan Graduate Institute of Communication Engineering NTU Taipei Taiwan Data Science Degree Program NTU Taipei Taiwan Department of Electrical Engineering NTU Taipei Taiwan Center for Advanced Computing and Imaging in Biomedicine NTU Taipei Taiwan Smart Medicine and Health Informatics Program NTU Taipei Taiwan

ISBN: (数字)9798331518622

ISBN: (纸本)9798331518639

Microsatellite instability (MSI) is a pivotal genetic marker influencing the efficacy of immunotherapy in colorectal cancer. Traditional MSI examination often requires additional genetic or immunohistochemical tests, whereas histology images, widely available in colorectal cancer diagnosis, offer a valuable alternative for MSI prediction. Although Transformer-based models have demonstrated promising outcomes in predicting MSI from histology images, they are hampered by traditional local attention mechanisms that struggle to capture long-range interdependencies and establish a comprehensive global receptive field. In this study, we introduce DiNAT-MSI, a novel framework for histology-based MSI prediction that incorporates the Dilated Neighborhood Attention Transformer (DiNAT). This model enhances global context recognition and substantially expands receptive fields, all without additional computational burden. Our results demonstrate that DiNAT-MSI achieves a superior patientwise AUROC compared to ResNet18 and Swin Transformer, along with commendable explainability. Our work not only illustrates a more accessible diagnostic tool for leveraging histological data but also underscores the potential of Transformerbased models with sophisticated attention designs in advancing precision medicine for colorectal cancer patients.

关键词： Attention mechanisms Histopathology Computational modeling Precision medicine Small satellites Immunotherapy Colorectal cancer Predictive models Transformers Genetics

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A BCLC Staging System for Hepatocellular Carcinoma using Swin Transformer and CT Imaging

A BCLC Staging System for Hepatocellular Carcinoma using Swi...

引用

Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)

作者： Shun-Cheng Chang Pochuang Wang Weichung Wang Tung-Hung Su Jia-Horng Kao Che Lin Graduate Institute of Communication Engineering National Taiwan University (NTU) Taipei Taiwan Department of Computer Science and Information Engineering NTU Taipei Taiwan NTU Institute of Applied Mathematical Sciences Taipei Taiwan Department of Internal Medicine Division of Gastroenterology and Hepatology National Taiwan University Hospital Taipei Taiwan Department of Electrical Engineering NTU Taipei Taiwan NTU Center for Advanced Computing and Imaging in Biomedicine Taipei Taiwan NTU Smart Medicine and Health Informatics Program Taipei Taiwan

ISBN: (数字)9798350371499

ISBN: (纸本)9798350371505

The Barcelona Clinic Liver Cancer (BCLC) staging system plays a crucial role in clinical planning, offering valuable insights for effectively managing hepatocellular carcinoma. Accurate prediction of BCLC stages can significantly ease the workload on radiologists. However, few datasets are explicitly designed for discerning BCLC stages. Despite the common practice of appending BCLC labels to clinical data within datasets, the inherent imbalance in BCLC distribution is further amplified by the diverse purposes for which datasets are curated. In this study, we aim to develop a BCLC staging system using the advanced Swin Transformer model. Additionally, we explore the integration of two datasets, each originally intended for separate objectives, highlighting the critical challenge of preserving class distribution in practical study designs. This exploration is pivotal for ensuring the applicability of our developed staging system in the designed clinical settings. Our resulting BCLC staging system demonstrates an accuracy of 55.81% (±7.8%), contributing to advancing medical image-based research for predicting BCLC stages.

关键词： Liver cancer Accuracy Computed tomography Biological system modeling Transformers Planning Biomedical imaging

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ReViT: A Hybrid Approach for BCLC Staging of Hepatocellular Carcinoma Using 3D CT with Multiple Instance Learning

ReViT: A Hybrid Approach for BCLC Staging of Hepatocellular ...

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IEEE EMBS International Conference on Information Technology Applications in Biomedicine (ITAB)

作者： Shun-Cheng Chang Hsin-Pei Yu Yi-Hsien Hsieh Pochuang Wang Weichung Wang Tung-Hung Su Jia-Horng Kao Che Lin Graduate Institute of Communication Engineering National Taiwan University (NTU) Taipei Taiwan Department of Computer Science and Information Engineering NTU Taipei Taiwan Institute of Applied Mathematical Sciences NTU Taipei Taiwan Department of Internal Medicine Division of Gastroenterology and Hepatology National Taiwan University Hospital Taipei Taiwan Department of Electrical Engineering NTU Taipei Taiwan Center for Advanced Computing and Imaging in Biomedicine NTU Taipei Taiwan Smart Medicine and Health Informatics Program NTU Taipei Taiwan

ISBN: (数字)9798350351552

ISBN: (纸本)9798350351569

Deep learning has revolutionized medical imaging, offering advanced methods for accurate diagnosis and treatment planning. The BCLC staging system is crucial for staging Hepatocellular Carcinoma (HCC), a high-mortality cancer. An automated BCLC staging system could significantly enhance diagnosis and treatment planning efficiency. However, we found that BCLC staging, which is directly related to the size and number of liver tumors, aligns well with the principles of the Multiple Instance Learning (MIL) framework. To effectively achieve this, we proposed a new preprocessing technique called Masked Cropping and Padding(MCP), which addresses the variability in liver volumes and ensures consistent input sizes. This technique preserves the structural integrity of the liver, facilitating more effective learning. Furthermore, we introduced Re ViT, a novel hybrid model that integrates the local feature extraction capabilities of Convolutional Neural Networks (CNNs) with the global context modeling of Vision Transformers (ViTs). Re ViT leverages the strengths of both architectures within the MIL framework, enabling a robust and accurate approach for BCLC staging. We will further explore the trade-off between performance and interpretability by employing TopK Pooling strategies, as our model focuses on the most informative instances within each bag.

关键词： Visualization Accuracy Three-dimensional displays Liver Transformers Planning Convolutional neural networks Context modeling Biomedical imaging Tumors

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