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Author Correction: BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets

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Nature methods 2024年第10期21卷 1959页

作者： Linus Manubens-Gil Zhi Zhou Hanbo Chen Arvind Ramanathan Xiaoxiao Liu Yufeng Liu Alessandro Bria Todd Gillette Zongcai Ruan Jian Yang Miroslav Radojević Ting Zhao Li Cheng Lei Qu Siqi Liu Kristofer E Bouchard Lin Gu Weidong Cai Shuiwang Ji Badrinath Roysam Ching-Wei Wang Hongchuan Yu Amos Sironi Daniel Maxim Iascone Jie Zhou Erhan Bas Eduardo Conde-Sousa Paulo Aguiar Xiang Li Yujie Li Sumit Nanda Yuan Wang Leila Muresan Pascal Fua Bing Ye Hai-Yan He Jochen F Staiger Manuel Peter Daniel N Cox Michel Simonneau Marcel Oberlaender Gregory Jefferis Kei Ito Paloma Gonzalez-Bellido Jinhyun Kim Edwin Rubel Hollis T Cline Hongkui Zeng Aljoscha Nern Ann-Shyn Chiang Jianhua Yao Jane Roskams Rick Livesey Janine Stevens Tianming Liu Chinh Dang Yike Guo Ning Zhong Georgia Tourassi Sean Hill Michael Hawrylycz Christof Koch Erik Meijering Giorgio A Ascoli Hanchuan Peng Institute for Brain and Intelligence Southeast University Nanjing China. Microsoft Corporation Redmond WA USA. Tencent AI Lab Bellevue WA USA. Computing Environment and Life Sciences Directorate Argonne National Laboratory Lemont IL USA. Kaya Medical Seattle WA USA. University of Cassino and Southern Lazio Cassino Italy. Center for Neural Informatics Structures and Plasticity Krasnow Institute for Advanced Study George Mason University Fairfax VA USA. Faculty of Information Technology Beijing University of Technology Beijing China. Beijing International Collaboration Base on Brain Informatics and Wisdom Services Beijing China. Nuctech Netherlands Rotterdam the Netherlands. Janelia Research Campus Howard Hughes Medical Institute Ashburn VA USA. Department of Electrical and Computer Engineering University of Alberta Edmonton Alberta Canada. Ministry of Education Key Laboratory of Intelligent Computation and Signal Processing Anhui University Hefei China. Paige AI New York NY USA. Scientific Data Division and Biological Systems and Engineering Division Lawrence Berkeley National Lab Berkeley CA USA. Helen Wills Neuroscience Institute and Redwood Center for Theoretical Neuroscience UC Berkeley Berkeley CA USA. RIKEN AIP Tokyo Japan. Research Center for Advanced Science and Technology (RCAST) The University of Tokyo Tokyo Japan. School of Computer Science University of Sydney Sydney New South Wales Australia. Texas A&M University College Station TX USA. Cullen College of Engineering University of Houston Houston TX USA. Graduate Institute of Biomedical Engineering National Taiwan University of Science and Technology Taipei Taiwan. National Centre for Computer Animation Bournemouth University Poole UK. PROPHESEE Paris France. Department of Neuroscience Columbia University New York NY USA. Mortimer B. Zuckerman Mind Brain Behavior Institute Columbia University New York NY USA. Department of Computer Science Northern Illinois Universit

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A computationally efficient detector: Using both the test and training data for disturbance correlation estimation

A computationally efficient detector: Using both the test an...

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2017 International Conference on Radar Systems, Radar 2017

作者： Liu, Jun Zhao, Hong-Yan Liu, Weijian Zhu, Shengqi Liu, Hongwei Li, Hongbin National Laboratory of Radar Signal Processing Xidian University Xi'an710071 China Wuhan Electronic Information Institute Wuhan430019 China Department of Electrical and Computer Engineering Stevens Institute of Technology HobokenNJ07030 United States

ISBN: (纸本)9781785615153

This paper examines a target detection problem in colored Gaussian disturbance with an unknown covariance matrix. In many classic adaptive detectors, the covariance estimator is formed by using only the training data. This necessitates calculating a new covariance estimator for each cell under test (CUT) during the cell-by-cell target search process. We consider herein an alternative approach that forms the covariance matrix estimate by using both test and training data for detection in homogeneous environments. This approach is computationally much more efficient since the covariance matrix estimator is computed only once and can be applied for target detection at each CUT. Using this estimator, we propose a new detector with two tunable parameters, which includes several existing detectors as special cases. Closed-form expressions for the probabilities of false alarm and detection are derived in the matched and mismatched cases. Simulation results reveal that the rejection capability of mismatched signals of the proposed detector can be flexibly controlled by adjusting its tunable parameters. © 2017 Institution of engineering and Technology. All rights reserved.

关键词： Covariance matrix

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Multilinear class-specific discriminant analysis

arXiv

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arXiv 2017年

作者： Tran, Dat Thanh Gabbouj, Moncef Iosifidis, Alexandros Laboratory of Signal Processing Tampere University of Technology Tampere Finland Department of Engineering Electrical and Computer Engineering Aarhus University

There has been a great effort to transfer linear discriminant techniques that operate on vector data to high-order data, generally referred to as Multilinear Discriminant Analysis (MDA) techniques. Many existing works focus on maximizing the inter-class variances to intra-class variances defined on tensor data representations. However, there has not been any attempt to employ class-specific discrimination criteria for the tensor data. In this paper, we propose a multilinear subspace learning technique suitable for applications requiring class-specific tensor models. The method maximizes the discrimination of each individual class in the feature space while retains the spatial structure of the input. We evaluate the efficiency of the proposed method on two problems, i.e. facial image analysis and stock price prediction based on limit order book data. Copyright © 2017, The Authors. All rights reserved.

关键词： Tensors

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A Subpixel Target Detection Approach to Hyperspectral Image Classification

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IEEE Transactions on Geoscience and Remote Sensing 2017年第9期55卷 5093-5114页

作者： Xue, Bai Yu, Chunyan Wang, Yulei Song, Meiping Li, Sen Wang, Lin Chen, Hsian-Min Chang, Chein-I Center for Hyperspectral Imaging in Remote Sensing Information and Technology College Dalian Maritime University Dalian China Remote Sensing Signal and Image Processing Laboratory Department of Computer Science and Electrical Engineering University of Maryland Baltimore County BaltimoreMD21250 United States Key Laboratory of Spectral Imaging Technology Chinese Academy of Sciences Xi'an China State Key Laboratory of Integrated Services Networks Xi'an China School of Physics and Optoelectronic Engineering Xidian University Xi'an China Department of Medical Research Taichung Veterans General Hospital Taichung Taiwan Department of Computer Science and Information Management Providence University Taichung02912 Taiwan

Hyperspectral image classification faces various levels of difficulty due to the use of different types of hyperspectral image data. Recently, spectral-spatial approaches have been developed by jointly taking care of spectral and spatial information. This paper presents a completely different approach from a subpixel target detection view point. It implements four stage processes, a preprocessing stage, which uses band selection (BS) and nonlinear band expansion, referred to as BS-then-nonlinear expansion (BSNE), a detection stage, which implements constrained energy minimization (CEM) to produce subpixel target maps, and an iterative stage, which develops an iterative CEM (ICEM) by applying Gaussian filters to capture spatial information, and then feeding the Gaussian-filtered CEM-detection maps back to BSNE band images to reprocess CEM in an iterative manner. Finally, in the last stage Otsu's method is applied to converting ICEM-detected real-valued maps to discrete values for classification. The entire process is called BSNE-ICEM. Experimental results demonstrate BSNE-ICEM, which has advantages over support vector machine-based approaches in many aspects, such as easy implementation, fewer parameters to be used, and better false classification and precision rates. © 1980-2012 IEEE.

关键词： Support vector machines

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Breast Cancer Diagnosis Using an Unsupervised Feature Extraction Algorithm Based on Deep Learning

Breast Cancer Diagnosis Using an Unsupervised Feature Extrac...

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Chinese Control Conference

作者： Yawen Xiao Jun Wu Zongli Lin Xiaodong Zhao Department of Automation Key Laboratory of System Control and Information Processing of Ministry of Education Shanghai China The Center for Bioinformatics and Computational Biology East China Normal University Shanghai China Charles L. Brown Department of Electrical and Computer Engineering University of Virginia Charlottesville VA U.S.A School of Biomedical Engineering Shanghai Jiao Tong University Shanghai China

Breast cancer is the most often detected cancer in women. At the same time, it is one of the most curable types of cancer if diagnosed early. With the development of the detection technology, a growing amount of clinical data and high-dimensional features can be used for breast cancer diagnosis. The high-dimensional data contributes to advances in the diagnostic technology, but also incurs a large amount of computational redundancy. Thus, extracting important information and reducing the feature dimension is critical to effective prediction and an accurate treatment decision. However, the previous works for breast cancer diagnosis are mainly based on labeled data that is difficult to obtain. To address this issue, in this paper, we demonstrate a new scheme, which integrates a deep learning based unsupervised feature extraction algorithm, the stacked auto-encoders, with a support vector machine model (SAE-SVM), for breast cancer diagnosis. The stacked auto-encoders with the greedy layer-wise pre-training and an improved momentum update algorithm is applied to capture essential information and extract necessary features of the original data. Then, a support vector machine model is employed to classify the samples with new features into malignant or benign tumors. The proposed method was tested on the Wisconsin Diagnostic Breast Cancer data set. The performance is evaluated using various measures and compared with the previously published results. The comparison results show that the proposed SAE-SVM method improves the accuracy to 98.25% and outperforms the other methods. The deep learning based unsupervised feature extraction significantly improves the performance of classification and provides a promising approach to breast cancer diagnosis.

关键词： Breast cancer Feature extraction Machine learning Support vector machines Electronic mail Principal component analysis

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Comments on "Design of fractional-order variants of complex LMS and NLMS algorithms for adaptive channel equalization"

arXiv

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arXiv 2018年

作者： Khan, Shujaat Wahab, Abdul Naseem, Imran Moinuddin, Muhammad Bio-imaging and Signal Processing Laboratory Department of Bio and Brain Engineering Korea Advanced Institute of Science and Technology 291 Daehak-ro Daejeon Yuseong-gu34141 Korea Republic of Department of Mathematics University of Education Attock Campus43600 Pakistan School of Electrical Electronic and Computer Engineering University of Western Australia 35 Stirling Highway CrawleyWA6009 Australia College of Engineering Karachi Institute of Economics and Technology Korangi Creek Karachi75190 Pakistan King Abdulaziz University Jeddah Saudi Arabia Electrical and Computer Engineering Department King Abdulaziz University Jeddah Saudi Arabia

The purpose of this note is to highlight some critical flaws in recently proposed fractional-order variants of complex least mean square (CLMS) and normalized least mean square (NLMS) algorithms in "Design of Fractional-order Variants of Complex LMS and Normalized LMS Algorithms for Adaptive Channel Equalization" [Non-linear Dyn. 88(2), 839-858 (2017)]. It is substantiated that these algorithms do not always converge whereas they have no advantage over the CLMS and NLMS algorithms whenever they converge. Our claims are based on analytical reasoning supported by simulations. Copyright © 2018, The Authors. All rights reserved.

关键词： Equalizers

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Efficient and Robust Machine Learning for Real-World Systems

arXiv

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arXiv 2018年

作者： Pernkopf, Franz Roth, Wolfgang Zöhrer, Matthias Pfeifenberger, Lukas Schindler, Günther Fröning, Holger Tschiatschek, Sebastian Peharz, Robert Mattina, Matthew Ghahramani, Zoubin Department of Electrical Engineering Laboratory of Signal Processing and Speech Communication Graz University of Technology Austria Institute of Computer Engineering Ruperts Karls University Heidelberg Germany Microsoft Research Cambridge United Kingdom Machine Learning Group Department of Engineering University of Cambridge United Kingdom Machine Learning Group Department of Engineering University of Cambridge United Kingdom Uber AI Labs CA United States Arm Research Arm Ltd. Cambridge United Kingdom

While machine learning is traditionally a resource intensive task, embedded systems, autonomous navigation and the vision of the Internet-of-Things fuel the interest in resource efficient approaches. These approaches require a carefully chosen tradeoff between performance and resource consumption in terms of computation and energy. On top of this, it is crucial to treat uncertainty in a consistent manner in all but the simplest applications of machine learning systems. In particular, a desideratum for any real-world system is to be robust in the presence of outliers and corrupted data, as well as being "aware" of its limits, i.e. the system should maintain and provide an uncertainty estimate over its own predictions. These complex demands are among the major challenges in current machine learning research and key to ensure a smooth transition of machine learning technology into every day’s applications. In this article, we provide an overview of the current state of the art of machine learning techniques facilitating these real-world requirements. First we provide a comprehensive review of resource-efficiency in deep neural networks with focus on techniques for model size reduction, compression and reduced precision. These techniques can be applied during training or as post-processing and are widely used to reduce both computational complexity and memory footprint. As most (practical) neural networks are limited in their ways to treat uncertainty, we contrast them with probabilistic graphical models, which readily serve these desiderata by means of probabilistic inference. In that way, we provide an extensive overview of the current state-of-the-art of robust and efficient machine learning for real-world systems. Copyright © 2018, The Authors. All rights reserved.

关键词： Deep neural networks

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A Generalised Directional Laplacian Distribution: Estimation, Mixture Models and Audio Source Separation

arXiv

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arXiv 2017年

作者： Mitianoudis, Nikolaos Image Processing and Multimedia Laboratory Department of Electrical and Computer Engineering Democritus University of Thrace Xanthi67100 Greece

—Directional or Circular statistics are pertaining to the analysis and interpretation of directions or rotations. In this work, a novel probability distribution is proposed to model multidimensional sparse directional data. The Generalised Directional Laplacian Distribution (DLD) is a hybrid between the Laplacian distribution and the von Mises-Fisher distribution. The distribution’s parameters are estimated using Maximum-Likelihood Estimation over a set of training data points. Mixtures of Directional Laplacian Distributions (MDLD) are also introduced in order to model multiple concentrations of sparse directional data. The author explores the application of the derived DLD mixture model to cluster sound sources that exist in an underdetermined instantaneous sound mixture. The proposed model can solve the general K × L (K Copyright © 2017, The Authors. All rights reserved.

关键词： Laplace transforms

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SEGMENTATION OF FLUORESCENCE MICROSCOPY IMAGES USING THREE DIMENSIONAL ACTIVE CONTOURS WITH INHOMOGENEITY CORRECTION

SEGMENTATION OF FLUORESCENCE MICROSCOPY IMAGES USING THREE D...

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International Symposium on Biomedical Imaging

作者： Soonam Lee Paul Salama Kenneth W. Dunn Edward J. Delp Video and Image Processing Laboratory School of Electrical and Computer Engineering Purdue University Department of Electrical and Computer Engineering Indiana University Division of Nephrology School of Medicine Indiana University

ISBN: (纸本)9781509011735

Image segmentation is an important step in the quantitative analysis of fluorescence microscopy data. Since fluorescence microscopy volumes suffer from intensity inhomogeneity, low image contrast and limited depth resolution, poor edge details, and irregular structure shape, segmentation still remains a challenging problem. This paper describes a nuclei segmentation method for fluorescence microscopy based on the use of three dimensional (3D) active contours with inhomogeneity correction. The correction information utilizes 3D volume information while addressing intensity inhomogeneity across vertical and horizontal directions. Experimental results demonstrate that the proposed method achieves better performance than other reported methods.

关键词： image segmentation fluorescence microscopy multiphoton microscopy

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Learning non-local image diffusion for image denoising

arXiv

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arXiv 2017年

作者： Qiao, Peng Dou, Yong Feng, Wensen Chen, Yunjin National Laboratory for Parallel and Distributed Processing School of Computer National University of Defense Technology Changsha410073 China School of Automation and Electrical Engineering University of Science and Technology Beijing Beijing

Image diffusion plays a fundamental role for the task of image denoising. Recently proposed trainable nonlinear reaction diffusion (TNRD) model defines a simple but very effective framework for image denoising. However, as the TNRD model is a local model, the diffusion behavior of which is purely controlled by information of local patches, it is prone to create artifacts in the homogenous regions and over-smooth highly textured regions, especially in the case of strong noise levels. Meanwhile, it is widely known that the non-local selfsimilarity (NSS) prior stands as an effective image prior for image denoising, which has been widely exploited in many nonlocal methods. In this work, we are highly motivated to embed the NSS prior into the TNRD model to tackle its weaknesses. In order to preserve the expected property that end-to-end training is available, we exploit the NSS prior by a set of non-local filters, and derive our proposed trainable non-local reaction diffusion (TNLRD) model for image denoising. Together with the local filters and influence functions, the non-local filters are learned by employing loss-specific training. The experimental results show that the trained TNLRD model produces visually plausible recovered images with more textures and less artifacts, compared to its local versions. Moreover, the trained TNLRD model can achieve strongly competitive performance to recent state-of-theart image denoising methods in terms of peak signal-to-noise ratio (PSNR) and structural similarity index (SSIM). Copyright © 2017, The Authors. All rights reserved.

关键词： Image denoising

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