检索结果-内蒙古大学图书馆

arXiv 2019年

作者： Cao, Xiaozhi Liao, Congyu Zhang, Zijing Iyer, Siddharth Srinivasan Chen, Zhifeng Lo, Wei-Ching Liu, Huafeng Wang, Kang He, Hongjian Setsompop, Kawin Zhong, Jianhui Bilgic, Berkin Center for Brain Imaging Science and Technology Department of Biomedical Engineering Zhejiang University Zhejiang Hangzhou China Athinoula A. Martinos Center for Biomedical Imaging Massachusetts General Hospital CharlestownMA United States Department of Radiology Harvard Medical School CharlestownMA United States State Key Laboratory of Modern Optical Instrumentation College of Optical Science and Engineering Zhejiang University Zhejiang Hangzhou China Department of Electrical Engineering and Computer Science Massachusetts Institute of Technology CambridgeMA United States School of Biomedical Engineering Guangdong Provincial Key Laboratory of Medical Image Processing Southern Medical University Guangzhou China Siemens Medical Solutions BostonMA United States Department of Neurology The First Affiliated Hospital School of Medicine Zhejiang University Hangzhou China Harvard-MIT Department of Health Sciences and Technology CambridgeMA United States Department of Imaging Sciences University of Rochester NY United States

Purpose: To rapidly obtain high isotropic-resolution T2 maps with whole-brain coverage and high geometric fidelity. Methods: A T2 blip-up/down echo planar imaging (EPI) acquisition with generalized Slice-dithered enhanced resolution (T2-BUDA-gSlider) is proposed. A radiofrequency (RF)-encoded multi-slab spin-echo EPI acquisition with multiple echo times (TEs) was developed to obtain high SNR efficiency with reduced repetition time (TR). This was combined with an interleaved 2-shot EPI acquisition using blip-up/down phase encoding. An estimated field map was incorporated into the joint multi-shot EPI reconstruction with a structured low rank constraint to achieve distortion-free and robust reconstruction for each slab without navigation. A Bloch simulated subspace model was integrated into gSlider reconstruction and utilized for T2 quantification. Results: In vivo results demonstrated that the T2 values estimated by the proposed method were consistent with gold standard spin-echo acquisition. Compared to the reference 3D fast spin echo (FSE) images, distortion caused by off-resonance and eddy current effects were effectively mitigated. Conclusion: BUDA-gSlider SE-EPI acquisition and gSlider-subspace joint reconstruction enabled distortion-free whole-brain T2 mapping in 2 min at ~1 mm3 isotropic resolution, which could bring significant benefits to related clinical and neuroscience applications. Copyright © 2019, The Authors. All rights reserved.

关键词： Spin polarization

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Learning non-local image diffusion for image denoising

arXiv

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arXiv 2017年

作者： Qiao, Peng Dou, Yong Feng, Wensen Chen, Yunjin National Laboratory for Parallel and Distributed Processing School of Computer National University of Defense Technology Changsha410073 China School of Automation and Electrical Engineering University of Science and Technology Beijing Beijing

Image diffusion plays a fundamental role for the task of image denoising. Recently proposed trainable nonlinear reaction diffusion (TNRD) model defines a simple but very effective framework for image denoising. However, as the TNRD model is a local model, the diffusion behavior of which is purely controlled by information of local patches, it is prone to create artifacts in the homogenous regions and over-smooth highly textured regions, especially in the case of strong noise levels. Meanwhile, it is widely known that the non-local selfsimilarity (NSS) prior stands as an effective image prior for image denoising, which has been widely exploited in many nonlocal methods. In this work, we are highly motivated to embed the NSS prior into the TNRD model to tackle its weaknesses. In order to preserve the expected property that end-to-end training is available, we exploit the NSS prior by a set of non-local filters, and derive our proposed trainable non-local reaction diffusion (TNLRD) model for image denoising. Together with the local filters and influence functions, the non-local filters are learned by employing loss-specific training. The experimental results show that the trained TNLRD model produces visually plausible recovered images with more textures and less artifacts, compared to its local versions. Moreover, the trained TNLRD model can achieve strongly competitive performance to recent state-of-theart image denoising methods in terms of peak signal-to-noise ratio (PSNR) and structural similarity index (SSIM). Copyright © 2017, The Authors. All rights reserved.

关键词： Image denoising

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The effect of non-Markovian recovery on reversible failure propagation on networks

arXiv

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arXiv 2019年

作者： Lin, Zhaohua Feng, Mi Tang, Ming Liu, Zonghua Hui, Pak Ming Lai, Ying-Cheng Department of Physics East China Normal University Shanghai200062 China School of Information Science Technology East China Normal University Shanghai200241 China Web Sciences Center University of Electronic Science and Technology of China Chengdu611731 China Big Data Research Center University of Electronic Science and Technology of China Chengdu611731 China Shanghai Key Laboratory of Multidimensional Information Processing East China Normal University Shanghai200241 China Department of Physics Chinese University of Hong Kong Shatin Hong Kong School of Electrical Computer and Energy Engineering Arizona State University TempeAZ85287 United States

Compared with the classical irreversible failure propagation, the spontaneous recovery model can better depict the failure propagation on network systems such as financial and transportation networks. In this paper, we study how the non-Markovian recovery process influences cascading failure dynamics in the spontaneous recovery systems. To this end, we compare two kinds of failure-recovery models: the non-Markovian recovery (NMR) model and the corresponding Markovian recovery (MR) model. We first develop a Pairwise approximation theory for the MR and NMR models, which can predict the time evolution, steady state, and hysteresis behaviour of failure-recovery systems more accurately than the classical mean-field (MF) method. We find that although the non-Markovian recovery mechanism does not essentially affect the steady state and hysteresis behaviour of failure-recovery systems, the two models exhibit distinct evolution processes. When investigating the effect of initial conditions on the phase transition and hysteresis behavior, we find in the hysteresis region, the NMR model exhibits a non-monotonic growth characteristic: with the increase of initial failed nodes, the steady state staying in relative low-failure phase first turns into relative high-failure phase, and then into relative low-failure phase again. We then use the MF theory to explain the phenomenon qualitatively and point out when considering non-Markovian dynamics, we should study the steady state not only from the perspective of the variation of parameters, but also from the initial conditions. Copyright © 2019, The Authors. All rights reserved.

关键词： Hysteresis

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Linear synchronization and circuit implementation of chaotic system with complete amplitude control

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Chinese Physics B 2017年第12期26卷 124-133页

作者：李春彪 Wesley Joo-Chen Thio Julien Clinton Sprott 张若洵陆天爱 Jiangsu Key Laboratory of Meteorological Observation and Information Processing Nanjing University of Information Science & Technology Nanjing 210044 China School of Electronic & Information Engineering Nanjing University of Information Science & Technology Nanjing 210044 China Department of Electrical and Computer Engineering The Ohio State University Columbus OH 43210 USA Department of Physics University of Wisconsin-Madison Madison WI 53706 USA College of Teacher Education Xingtai University Xingtai 054001 China

Although chaotic signals are considered to have great potential applications in radar and communication engineering, their broadband spectrum makes it difficult to design an applicable amplifier or an attenuator for amplitude conditioning. Moreover, the transformation between a unipolar signal and a bipolar signal is often required. In this paper, a more intelligent hardware implementation based on field programmable analog array （FPAA） is constructed for chaotic systems with complete amplitude control. Firstly, two chaotic systems with complete amplitude control are introduced, one of which has the property of offset boosting with total amplitude control, while the other has offset boosting and a parameter for partial control. Both cases can achieve complete amplitude control including amplitude rescaling and offset boosting. Secondly, linear synchronization is established based on the special structure of chaotic system. Finally, experimental circuits are constructed on an FPAA where the predicted amplitude control is realized through only two independent configurable analog module （CAM） gain values.

关键词： complete amplitude control amplitude rescaling offset boosting linear synchronization

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Breast Cancer Diagnosis Using an Unsupervised Feature Extraction Algorithm Based on Deep Learning

Breast Cancer Diagnosis Using an Unsupervised Feature Extrac...

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第37届中国控制会议

作者： Yawen Xiao Jun Wu Zongli Lin Xiaodong Zhao Department of Automation Shanghai Jiao Tong Universityand Key Laboratory of System Control and Information Processing of Ministry of Education The Center for Bioinformatics and Computational Biology Shanghai Key Laboratory of Regulatory Biologythe Institute of Biomedical Sciences and School of Life SciencesEast China Normal University Charles L.Brown Department of Electrical and Computer Engineering University of Virginia School of Biomedical Engineering Shanghai Jiao Tong University

Breast cancer is the most often detected cancer in women. At the same time, it is one of the most curable types of cancer if diagnosed early. With the development of the detection technology, a growing amount of clinical data and highdimensional features can be used for breast cancer diagnosis. The high-dimensional data contributes to advances in the diagnostic technology, but also incurs a large amount of computational redundancy. Thus, extracting important information and reducing the feature dimension is critical to effective prediction and an accurate treatment ***, the previous works for breast cancer diagnosis are mainly based on labeled data that is difficult to obtain. To address this issue, in this paper, we demonstrate a new scheme, which integrates a deep learning based unsupervised feature extraction algorithm, the stacked auto-encoders, with a support vector machine model（SAE-SVM）, for breast cancer diagnosis. The stacked auto-encoders with the greedy layerwise pre-training and an improved momentum update algorithm is applied to capture essential information and extract necessary features of the original data. Then, a support vector machine model is employed to classify the samples with new features into malignant or benign tumors. The proposed method was tested on the Wisconsin Diagnostic Breast Cancer data set. The performance is evaluated using various measures and compared with the previously published results. The comparison results show that the proposed SAE-SVM method improves the accuracy to 98.25% and outperforms the other methods. The deep learning based unsupervised feature extraction significantly improves the performance of classification and provides a promising approach to breast cancer diagnosis.

关键词： Deep learning auto-encoder feature extraction breast cancer diagnosis unlabeled data

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SEGMENTATION OF FLUORESCENCE MICROSCOPY IMAGES USING THREE DIMENSIONAL ACTIVE CONTOURS WITH INHOMOGENEITY CORRECTION

SEGMENTATION OF FLUORESCENCE MICROSCOPY IMAGES USING THREE D...

引用

International Symposium on Biomedical Imaging

作者： Soonam Lee Paul Salama Kenneth W. Dunn Edward J. Delp Video and Image Processing Laboratory School of Electrical and Computer Engineering Purdue University Department of Electrical and Computer Engineering Indiana University Division of Nephrology School of Medicine Indiana University

ISBN: (纸本)9781509011735

Image segmentation is an important step in the quantitative analysis of fluorescence microscopy data. Since fluorescence microscopy volumes suffer from intensity inhomogeneity, low image contrast and limited depth resolution, poor edge details, and irregular structure shape, segmentation still remains a challenging problem. This paper describes a nuclei segmentation method for fluorescence microscopy based on the use of three dimensional (3D) active contours with inhomogeneity correction. The correction information utilizes 3D volume information while addressing intensity inhomogeneity across vertical and horizontal directions. Experimental results demonstrate that the proposed method achieves better performance than other reported methods.

关键词： image segmentation fluorescence microscopy multiphoton microscopy

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Deep learning enabled fast optical characterization of two-dimensional materials

arXiv

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arXiv 2019年

作者： Han, Bingnan Lin, Yuxuan Yang, Yafang Mao, Nannan Li, Wenyue Wang, Haozhe Fatemi, Valla Zhou, Lin Wang, Joel I-Jan Ma, Qiong Cao, Yuan Rodan-Legrain, Daniel Bie, Ya-Qing Navarro-Moratalla, Efrén Klein, Dahlia MacNeill, David Wu, Sanfeng Leong, Wei Sun Kitadai, Hikari Ling, Xi Jarillo-Herrero, Pablo Palacios, Tomás Yin, Jihao Kong, Jing Image Processing Center School of Astronautics Beihang University Beijing100191 China Department of Electrical Engineering and Computer Science Massachusetts Institute of Technology CambridgeMA02139 United States Department of Physics Massachusetts Institute of Technology CambridgeMA02139 United States Department of Chemistry Boston University BostonMA02215 United States Research Laboratory of Electronics Massachusetts Institute of Technology CambridgeMA02139 United States Instituto de Ciencia Molecular Universidad de Valencia c/Catedrático José Beltrán 2 Paterna46980 Spain Division of Materials Science and Engineering Boston University BostonMA02215 United States

Characterization of nanomaterial morphologies with advanced microscopy and/or spectroscopy tools plays an indispensable role in nanoscience and nanotechnology research 1 2, 3, 4, 5, as rich information about the chemical compositions, crystallography, other physical and chemical properties, as well as the growth mechanism can be extracted from morphology analysis. However, the interpretation of imaging data heavily relies on the "intuition" of experienced researchers. As a result, many of the deep graphical features are often unused because of difficulties in processing the data and finding the correlations. Such difficulties can be well addressed by deep learning 6 7, 8, 9. In this work, we use the optical characterization of two-dimensional (2D) materials as a case study, and demonstrate a neural network based algorithm for the material and thickness identification of exfoliated 2D materials with high prediction accuracy and real-time processing capability. Further analysis shows that the trained network can be used to predict physical properties of the materials. Finally, a transfer learning technique is applied to adapt the pretrained network to more optical characterization applications such as identifying layer numbers of chemically synthesized graphene domains. Copyright © 2019, The Authors. All rights reserved.

关键词： Data handling

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Common Limitations of Image processing Metrics: A Picture Story

arXiv

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arXiv 2021年

作者： Reinke, Annika Tizabi, Minu D. Sudre, Carole H. Eisenmann, Matthias Rädsch, Tim Baumgartner, Michael Acion, Laura Antonelli, Michela Arbel, Tal Bakas, Spyridon Bankhead, Peter Benis, Arriel Blaschko, Matthew Buettner, Florian Cardoso, M. Jorge Chen, Jianxu Cheplygina, Veronika Christodoulou, Evangelia Cimini, Beth A. Collins, Gary S. Engelhardt, Sandy Farahani, Keyvan Ferrer, Luciana Galdran, Adrian van Ginneken, Bram Glocker, Ben Godau, Patrick Haase, Robert Hamprecht, Fred Hashimoto, Daniel A. Heckmann-Nötzel, Doreen Hirsch, Peter Hoffman, Michael M. Huisman, Merel Isensee, Fabian Jannin, Pierre Kahn, Charles E. Kainmueller, Dagmar Kainz, Bernhard Karargyris, Alexandros Karthikesalingam, Alan Kavur, A. Emre Kenngott, Hannes Kleesiek, Jens Kleppe, Andreas Koehler, Sven Kofler, Florian Kopp-Schneider, Annette Kooi, Thijs Kozubek, Michal Kreshuk, Anna Kurc, Tahsin Landman, Bennett A. Litjens, Geert Madani, Amin Maier-Hein, Klaus Martel, Anne L. Mattson, Peter Meijering, Erik Menze, Bjoern Moher, David Moons, Karel G.M. Müller, Henning Nichyporuk, Brennan Nickel, Felix Noyan, M. Alican Petersen, Jens Polat, Gorkem Rafelski, Susanne M. Rajpoot, Nasir Reyes, Mauricio Rieke, Nicola Riegler, Michael A. Rivaz, Hassan Saez-Rodriguez, Julio Sánchez, Clara I. Schroeter, Julien Saha, Anindo Selver, M. Alper Sharan, Lalith Shetty, Shravya Smeden, Maarten V.A.N. Stieltjes, Bram Summers, Ronald M. Taha, Abdel A. Tiulpin, Aleksei Tsaftaris, Sotirios A. Calster, Ben V.A.N. Varoquaux, Gaël Wiesenfarth, Manuel Yaniv, Ziv R. Jäger, Paul Maier-Hein, Lena Division of Intelligent Medical Systems and HI Helmholtz Imaging Heidelberg Germany Faculty of Mathematics and Computer Science Heidelberg University Heidelberg Germany Division of Intelligent Medical Systems Heidelberg Germany NCT Heidelberg DKFZ University Medical Center Heidelberg Germany MRC Unit for Lifelong Health and Ageing UCL Centre for Medical Image Computing Department of Computer Science University College London London United Kingdom School of Biomedical Engineering and Imaging Science King’s College London London United Kingdom Division of Medical Image Computing Heidelberg Germany Instituto de Cálculo CONICET – Universidad de Buenos Aires Buenos Aires Argentina Centre for Medical Image Computing University College London London United Kingdom McGill University Montréal Canada Division of Computational Pathology Dept of Pathology & Laboratory Medicine Indiana University School of Medicine IU Health Information and Translational Sciences Building Indianapolis United States University of Pennsylvania Richards Medical Research Laboratories FL7 PhiladelphiaPA United States Institute of Genetics and Cancer University of Edinburgh Edinburgh United Kingdom Department of Digital Medical Technologies Holon Institute of Technology Holon Israel European Federation for Medical Informatics Le Mont-sur-Lausanne Switzerland Center for Processing Speech and Images Department of Electrical Engineering KU Leuven Kasteelpark Arenberg 10 - box 2441 Leuven3001 Belgium Frankfurt/Mainz DKFZ UCT Frankfurt-Marburg Germany Heidelberg Germany Goethe University Frankfurt Department of Medicine Germany Goethe University Frankfurt Department of Informatics Germany Frankfurt Cancer Insititute Germany Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Dortmund Germany Department of Computer Science IT University of Copenhagen Copenhagen Denmark Imaging Platform Broad Institute of MIT and Harvard CambridgeMA United States Centre for St

While the importance of automatic image analysis is continuously increasing, recent meta-research revealed major flaws with respect to algorithm validation. Performance metrics are particularly key for meaningful, objective, and transparent performance assessment and validation of the used automatic algorithms, but relatively little attention has been given to the practical pitfalls when using specific metrics for a given image analysis task. These are typically related to (1) the disregard of inherent metric properties, such as the behaviour in the presence of class imbalance or small target structures, (2) the disregard of inherent data set properties, such as the non-independence of the test cases, and (3) the disregard of the actual biomedical domain interest that the metrics should reflect. This living dynamically document has the purpose to illustrate important limitations of performance metrics commonly applied in the field of image analysis. In this context, it focuses on biomedical image analysis problems that can be phrased as image-level classification, semantic segmentation, instance segmentation, or object detection task. The current version is based on a Delphi process on metrics conducted by an international consortium of image analysis experts from more than 60 institutions worldwide. © 2021, CC BY.

关键词： Medical imaging

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Inferring microRNA-disease association by hybrid recommendation algorithm and unbalanced bi-random walk on heterogeneous network

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Scientific reports 2019年第1期9卷 2474页

作者： Dong-Ling Yu Yuan-Lin Ma Zu-Guo Yu Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education and Hunan Key Laboratory for Computation and Simulation in Science and Engineering Xiangtan University Xiangtan Hunan 411105 P.R. China. Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education and Hunan Key Laboratory for Computation and Simulation in Science and Engineering Xiangtan University Xiangtan Hunan 411105 P.R. China. yuzuguo@***. School of Electrical Engineering and Computer Science Queensland University of Technology Brisbane Q4001 Australia. yuzuguo@***.

More and more research works have indicated that microRNAs (miRNAs) play indispensable roles in exploring the pathogenesis of diseases. Detecting miRNA-disease associations by experimental techniques in biology is expensive and time-consuming. Hence, it is important to propose reliable and accurate computational methods to exploring potential miRNAs related diseases. In our work, we develop a novel method (BRWHNHA) to uncover potential miRNAs associated with diseases based on hybrid recommendation algorithm and unbalanced bi-random walk. We first integrate the Gaussian interaction profile kernel similarity into the miRNA functional similarity network and the disease semantic similarity network. Then we calculate the transition probability matrix of bipartite network by using hybrid recommendation algorithm. Finally, we adopt unbalanced bi-random walk on the heterogeneous network to infer undiscovered miRNA-disease relationships. We tested BRWHNHA on 22 diseases based on five-fold cross-validation and achieves reliable performance with average AUC of 0.857, which an area under the ROC curve ranging from 0.807 to 0.924. As a result, BRWHNHA significantly improves the performance of inferring potential miRNA-disease association compared with previous methods. Moreover, the case studies on lung neoplasms and prostate neoplasms also illustrate that BRWHNHA is superior to previous prediction methods and is more advantageous in exploring potential miRNAs related diseases. All source codes can be downloaded from https://***/myl446/BRWHNHA .

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Effects of RapidEye Imagery's Red-edge Band and Vegetation Indices on Land Cover Classification in an Arid Region

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Chinese Geographical Science 2017年第5期27卷 827-835页

作者： LI Xianju CHEN Gang LIU Jingyi CHEN Weitao CHENG Xinwen LIAO Yiwei College of Computer Science and Hubei Key Laboratory of Intelligent Geo-Information Processing China University of GeosciencesWuhan 430074China College of Marine Science and Technology China University of GeosciencesWuhan 430074China Laboratory of Geographic Information and Spatial Analysis Department of Geography and PlanningQueen's UniversityKingston ON K7L3N6Canada Faculty of Information Engineering China University of GeosciencesWuhan 430074China School of Electrical and Electronic Engineering Huazhong University of Science and TechnologyWuhan 430074China

Land cover classification(LCC) in arid regions is of great significance to the assessment, prediction, and management of land desertification. Some studies have shown that the red-edge band of RapidE ye images was effective for vegetation identification and could improve LCC accuracy. However, there has been no investigation of the effects of RapidE ye images' red-edge band and vegetation indices on LCC in arid regions where there are spectrally similar land covers mixed with very high or low vegetation coverage information and bare land. This study focused on a typical inland arid desert region located in Dunhuang Basin of northwestern China. First, five feature sets including or excluding the red-edge band and vegetation indices were constructed. Then, a land cover classification system involving plant communities was developed. Finally, random forest algorithm-based models with different feature sets were utilized for LCC. The conclusions drawn were as follows: 1) the red-edge band showed slight contribution to LCC accuracy; 2) vegetation indices had a significant positive effect on LCC; 3) simultaneous addition of the red-edge band and vegetation indices achieved a significant overall accuracy improvement(3.46% from 86.67%). In general, vegetation indices had larger effect than the red-edge band, and simultaneous addition of them significantly increased the accuracy of LCC in arid regions.

关键词： arid region land cover classification RapidEye red-edge band vegetation indices random forest Dunhuang Basin

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