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Study on the Medical image Distributed Dynamic processing Method

Chinese Journal of Systems Engineering and Electronics 2003年第4期000卷

To meet the challenge of implementing rapidly advanced, time-consuming medical image processing algorithms,it is necessary to develop a medical image processing technology to process a 2D or 3D medical image dynamically on the web. But in a premier system, only static image processing can be provided with the limitation of web technology. The development of Java and CORBA (common object request broker architecture) overcomes the shortcoming of the web static application and makes the dynamic processing of medical images on the web available. To develop an open solution of distributed computing, we integrate the Java, and web with the CORBA and present a web-based medical image dynamic processing methed, which adopts Java technology as the language to program application and components of the web and utilies the CORBA architecture to cope with heterogeneous property of a complex distributed system. The method also provides a platform-independent, transparent processing architecture to implement the advanced image routines and enable users to access large dataset and resources according to the requirements of medical applications. The experiment in this paper shows that the medical image dynamic processing method implemented on the web by using Java and the CORBA is feasible.

关键词： medical image dynamic processing based on web distributed computing interoperation CORBA

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Isoform Function Prediction Based on Heterogeneous Graph Attention Networks

Isoform Function Prediction Based on Heterogeneous Graph Att...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Kuo Guo Yifan Li Hao Chen Hong-Bin Shen Yang Yang Department of Computer Science and Engineering Shanghai Jiao Tong University and Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering Shanghai China Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University and Key Laboratory of System Control and Information Processing Ministry of Education of China Shanghai China Computational Biology Department School of Computer Science Carnegie Mellon University Pittsburgh PA USA

Isoforms refer to different mRNA molecules transcribed from the same gene, which can be translated into proteins with varying structures and functions. Predicting the functions of isoforms is an essential topic in bioinformatics as it can provide valuable insights into the intricate mechanisms of gene regulation and biological processes. Conventionally, gene function labels are standardized in Gene Ontology (GO) terms. However, traditional methods for predicting isoform function are largely limited by the absence of isoform-specific labels, sparse annotations, and the vast number of GO terms. To address these issues, we propose HANIso, a deep learning-based method for isoform function prediction. HANIso leverages a pretrained protein language model to extract features from protein sequences. It also integrates heterogeneous information, such as isoform sequence features, GO annotations, and isoform interaction data, using a Heterogeneous Graph Attention Network (HAN). This allows the model to learn the importance of different sources of information and their semantic relationships through the attention mechanism. Our method can predict function labels at both the gene level and isoform level. We conduct experiments on two species datasets, and the results demonstrate that our method outperforms existing methods on both AUROC and AUPRC. HANIso has the potential to overcome the limitations of traditional methods and provide a more accurate and comprehensive understanding of isoform function.

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Two new approaches for image registration based on spatial-temporal relationship

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Journal of Systems Engineering and Electronics 2005年第2期000卷

作者： Deng Zhipeng Yang Jie Liu Xiaojun Institute of Image Processing & Pattern Recognition， Shanghai Jiaotong University， Shanghai 200030， P. R. China

How to improve the probability of registration and precision of localization is a hard problem, which is desiderated to solve. The two basic approaches (normalized cross-correlation and phase correlation) for image registration are analysed, two improved approaches based on spatial-temporal relationship are presented. This method adds the correlation matrix according to the displacements in x- cirection and y- directions, and the registration pose is searched in the added matrix. The method overcomes the shortcoming that the probability of registration decreasing with area increasing owing to geometric distortion, improves the probability and the robustness of registration.

关键词： image registration phase correlation normalized cross-correlation spatial-temporal relationship

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Wireless Location Determination for Mobile Objects Based on GSM in Intelligent Transportation Systems

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Chinese Journal of Systems Engineering and Electronics 2003年第2期000卷

The mobile object (MO) location determination technologies which can be used in intelligent transportation system (ITS) are studied in this paper. The principles and characteristics of wireless location determination technologies are introduced and the characteristics of GSM useful for location determination are also summarized. An experimental positioning system based on GSM is proposed, and the architecture is described. TOA method based on GSM signals and TDOA method are used in the experimental system. Moreover, the methods are simulated. The performance of the positioning methods is assessed in the simulation environment, and the accuracy for 67% mobile stations (MS) is 70m in urban areas.

关键词： Wireless location TDOA AOA TOA GSM ITS

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Efficient face recognition method based on DCT and LDA

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Chinese Journal of Systems Engineering and Electronics 2004年第2期000卷

It has been demonstrated that the linear discriminant analysis (LDA) is an effective approach in face recognition tasks. However, due to the high dimensionality of an image space, many LDA based approaches first use the principal component analysis (PCA) to project an image into a lower dimensional space, then perform the LDA transform to extract discriminant feature. But some useful discriminant information to the following LDA transform will be lost in the PCA step. To overcome these defects, a face recognition method based on the discrete cosine transform (DCT) and the LDA is proposed. First the DCT is used to achieve dimension reduction, then LDA transform is performed on the lower space to extract features. Two face databases are used to test our method and the correct recognition rates of 97.5 % and 96.0 % are obtained respectively. The performance of the proposed method is compared with that of the PCA + LDA method and the results show that the method proposed outperforms the PCA + LDA method.

关键词： face recognition discrete cosine transform linear discriminant analysis principal component analysis

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Blind separation of sources in nonlinear convolved mixture based on a novel network

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Chinese Journal of Systems Engineering and Electronics 2004年第4期000卷

Blind separation of independent sources from their nonlinear convoluted mixtures is a more realistic problem than from linear ones. A solution to this problem based on the Entropy Maximization principle is presented. First we propose a novel two-layer network as the de-mixing system to separate sources in nonlinear convolved mixture. In output layer of our network we use feedback network architecture to cope with convoluted mixtures. Then we derive learning algorithms for the two-layer network by maximizing the information entropy. Based on the comparison of the computer simulation results, it can be concluded that the proposed algorithm has a better nonlinear convolved blind signal separation effect than the H.H. Y' s algorithm.

关键词： blind separation nonlinear convoluted mixture maximum entropy feedback architecture

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A regularization approach for instance-based superset label learning

arXiv

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arXiv 2019年

作者： Gong, Chen Liu, Tongliang Tang, Yuanyan Yang, Jian Yang, Jie Tao, Dacheng School of Computer Science and Engineering Nanjing University of Science and Technology Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University School of Software Faculty of Engineering and Information Technology University of Technology Sydney UltimoNSW2007 Australia Faculty of Science and Technology University of Macau Macau999078 China College of Computer Science Chongqing University Chongqing400000 China School of Computer Science and Engineering Nanjing University of Science and Technology Nanjing210094 China Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai200240 China School of Information Technologies Faculty of Engineering and Information Technologies University of Sydney J12/318 Cleveland St DarlingtonNSW2008 Australia

Different from the traditional supervised learning in which each training example has only one explicit label, Superset Label Learning (SLL) refers to the problem that a training example can be associated with a set of candidate labels, and only one of them is correct. Existing SLL methods are either regularization-based or instance-based, and the latter of which has achieved state-of-the-art performance. This is because the latest instance-based methods contain an explicit disambiguation operation that accurately picks up the groundtruth label of each training example from its ambiguous candidate labels. However, such disambiguation operation does not fully consider the mutually exclusive relationship among different candidate labels, so the disambiguated labels are usually generated in a nondiscriminative way, which is unfavorable for the instance-based methods to obtain satisfactory performance. To address this defect, we develop a novel Regularization approach for Instancebased Superset Label (RegISL) learning so that our instancebased method also inherits the good discriminative ability possessed by the regularization scheme. Specifically, we employ a graph to represent the training set, and require the examples that are adjacent on the graph to obtain similar labels. More importantly, a discrimination term is proposed to enlarge the gap of values between possible labels and unlikely labels for every training example. As a result, the intrinsic constraints among different candidate labels are deployed, and the disambiguated labels generated by RegISL are more discriminative and accurate than those output by existing instance-based algorithms. The experimental results on various tasks convincingly demonstrate the superiority of our RegISL to other typical SLL methods in terms of both training accuracy and test accuracy. Copyright © 2019, The Authors. All rights reserved.

关键词： Machine learning

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A Parallel-based Lifting Algorithm and VLSI Architecture for DWT

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Journal of Electronics(China) 2006年第2期23卷 244-248页

作者： Xiong Chengyi Tian Jinwen Liu Jian Gao Zhirong The State Key Lab of Education Commission for Image Processing and Intelligent Control Institute of Pattern Recognition ＆ Artificial Intelligence Huazhong Univ. of Science ＆ Tech. Wuhan 430074 China College of Electronic Info. Eng. South- Center Univ. for Nationalities Wuhan 430074 China Dept of Computer Science Wuhan Univ. of Science ＆ Eng. Wuhan 430074 China

A novel Parallel-Based Lifting Algorithm （PBLA） for Discrete Wavelet Transform （DWT）, exploiting the parallelism of arithmetic operations in all lifting steps, is proposed in this paper. It leads to reduce the critical path latency of computation, and to reduce the complexity of hardware implementation as well. The detailed derivation on the proposed algorithm, as well as the resulting Very Large Scale Integration （VLSI） architecture, is introduced, taking the 9/7 DWT as an example but without loss of generality. In comparison with the Conventional Lifting Algorithm Based Implementation （CLABI）, the critical path latency of the proposed architecture is reduced by more than half from （4Tm ＋ 8Ta）to Tm ＋ 4Ta, and is competitive to that of Convolution-Based Implementation （CBI）, but the new implementation will save significantly in hardware. The experimental results demonstrate that the proposed architecture has good performance in both increasing working frequency and reducing area.

关键词： Discrete Wavelet Transform （DFT） Lifting scheme Parallel Very Large Scale Integration（VLSI）

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Novel low power supply DC-coupled 1.25 Gb/s laser diode driver

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Guti Dianzixue Yanjiu Yu Jinzhan/Research and Progress of Solid State Electronics 2006年第4期26卷 498-503页

作者： Fu, Shengmeng Chen, Zhaoyang Institute for Pattern Recognition and Artificial Intelligence Huazhong University of Science and Technology Wuhan 430074 China Key Laboratory for Image Information Processing and Intelligent Control Huazhong University of Science and Technology Wuhan 430074 China

Since the DC-coupled interface between the driver and the laser diode makes it impossible for the conventional drivers to work with low power supply, an output stage has been proposed. A novel APC can suppress the output average optical power and extinction ratio within ±0.3 dBm and ±0.4 dB(-40°C to 100°C), respectively. The initialization time is not more than 0.6 μs because the fast binary search algorithm is incorporated into the APC. The burst-on delay and burst-off delay are less than 5 ns and meet the requirement of PON system. The chip is fabricated in TSMC 0.8 μm BiCMOS process and occupies an area of 1.56 mm × 1.67 mm with a power consumption of 105 mW.

关键词： Diodes

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An evolutionary lion optimization algorithm-based image compression technique for biomedical applications

An evolutionary lion optimization algorithm-based image comp...

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作者： Geetha, Karuppaiah Anitha, Veerasamy Elhoseny, Mohamed Kathiresan, Shankar Shamsolmoali, Pourya Selim, Mahmoud M. Department of Computer Science & Engineering MIET Engineering College Tamilnadu India Department of Computer Science and Engineering Imayam College of Engineering Anna University ChennaiTamilnadu India Faculty of Computers and Information Mansoura University Mansoura Egypt Scientific Group for Research and Technology Cairo Egypt Department of Computer Applications Alagappa University Karaikudi India Huawei Technologies Corporate Shanghai China. & Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai China Department of Mathematics Al-Aflaj College of Science and Human Studies Prince Sattam Bin Abdulaziz University Al-Kharj Saudi Arabia

Recently, medical image compression becomes essential to effectively handle large amounts of medical data for storage and communication purposes. Vector quantization (VQ) is a popular image compression technique, and the commonly used VQ model is Linde–Buzo–Gray (LBG) that constructs a local optimal codebook to compress images. The codebook construction was considered as an optimization problem, and a bioinspired algorithm was employed to solve it. This article proposed a VQ codebook construction approach called the L2-LBG method utilizing the Lion optimization algorithm (LOA) and Lempel Ziv Markov chain Algorithm (LZMA). Once LOA constructed the codebook, LZMA was applied to compress the index table and further increase the compression performance of the LOA. A set of experimentation has been carried out using the benchmark medical images, and a comparative analysis was conducted with Cuckoo Search-based LBG (CS-LBG), Firefly-based LBG (FF-LBG) and JPEG2000. The compression efficiency of the presented model was validated in terms of compression ratio (CR), compression factor (CF), bit rate, and peak signal to noise ratio (PSNR). The proposed L2-LBG method obtained a higher CR of 0.3425375 and PSNR value of 52.62459 compared to CS-LBG, FA-LBG, and JPEG2000 methods. The experimental values revealed that the L2-LBG process yielded effective compression performance with a better-quality reconstructed image. © 2020 John Wiley & Sons Australia, Ltd

关键词： Vector quantization

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