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Energy enhanced tissue texture in spectral computed tomography for lesion classification

Visual Computing for Industry,Biomedicine,and Art 2019年第1期2卷 138-149页

作者： Yongfeng Gao Yongyi Shi Weiguo Cao Shu Zhang Zhengrong Liang Department of Radiology Stony Brook UniversityStony BrookNY 11794USA Institute of Image Processing and Pattern Recognition Xi’an Jiaotong UniversityXi’an 710049ShanxiChina Departments of Radiology Biomedical EngineeringComputer Scienceand Electrical EngineeringStony Brook UniversityStony BrookNY 11794USA

Tissue texture reflects the spatial distribution of contrasts of image voxel gray levels,i.e.,the tissue heterogeneity,and has been recognized as important biomarkers in various clinical *** computed tomography(CT)is believed to be able to enrich tissue texture by providing different voxel contrast images using different X-ray ***,this paper aims to address two related issues for clinical usage of spectral CT,especially the photon counting CT(PCCT):(1)texture enhancement by spectral CT image reconstruction,and(2)spectral energy enriched tissue texture for improved lesion *** issue(1),we recently proposed a tissue-specific texture prior in addition to low rank prior for the individual energy-channel low-count image reconstruction problems in PCCT under the Bayesian *** results showed the proposed method outperforms existing methods of total variation(TV),low-rank TV and tensor dictionary learning in terms of not only preserving texture features but also suppressing image *** issue(2),this paper will investigate three models to incorporate the enriched texture by PCCT in accordance with three types of inputs:one is the spectral images,another is the cooccurrence matrices(CMs)extracted from the spectral images,and the third one is the Haralick features(HF)extracted from the *** were performed on simulated photon counting data by introducing attenuationenergy response curve to the traditional CT images from energy integration *** results showed the spectral CT enriched texture model can improve the area under the receiver operating characteristic curve(AUC)score by 7.3%,0.42%and 3.0%for the spectral images,CMs and HFs respectively on the five-energy spectral data over the original single energy data *** CM-and HF-inputs can achieve the best AUC of 0.934 and *** texture themed study shows the insight that incorporating clinical important prior information,e.g.,tiss

关键词： Tissue texture Spectral computed tomography Lesion classification Machine learning Bayesian reconstruction

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Abnormal resting-state EEG power and impaired inhibition control in young smokers

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Neuroscience Letters 2021年第0期761卷 136120-136120页

作者： Dong, Fang Li, Xiaojian Zhang, Yunmiao Jia, Shaodi Zhang, Shidi Xue, Ting Ren, Yan Lv, Xiaoqi Yuan, Kai Yu, Dahua Inner Mongolia Key Laboratory of Pattern Recognition and Intelligent Image Processing School of Information Engineering Inner Mongolia University of Science and Technology Baotou 014010 Inner Mongolia China College of Information Engineering Inner Mongolia University of Technology Hohhot 010051 Inner Mongolia China School of Life Science and Technology Xidian University Xi'an 710071 Shaanxi China

Exposure to nicotine during adolescence may cause neurophysiological changes and increase the risks of developing nicotine dependence;it can even lead to lifelong smoking. The intake of nicotine may also lead to abnormal patterns of oscillatory brain activity and inhibition control deficits. However, little is known about the specific relationship between oscillatory brain activity during the resting state and inhibition control capacity in young smokers. In the present study, we acquired resting-state electroencephalography (EEG) data from thirty-four young smokers and 39 age-matched non-smoking controls. Inhibition control performance was measured by a Go/NoGo task. Compared with non-smoking controls, we detected reduced low-frequency delta band activity in the frontal, central and posterior cortices of young smokers. Furthermore, young smokers committed more errors in response to infrequent NoGo trials. Notably, we demonstrated that delta absolute power in the frontal region was negatively correlated with NoGo errors and that alpha power in the central region was positively correlated with NoGo errors in non-smoking controls but not in young smokers. These findings may suggest that these inhibitory control processes were associated with alterations in oscillatory brain activity during the resting state. Our findings suggest that alterations of power spectra in delta bands may act as a useful biomarker of inhibitory control performance and provide a scientific basis for the diagnosis and treatment of nicotine addiction in adolescents. © 2021 Elsevier B.V.

关键词： Brain oscillations Electroencephalography (EEG) Inhibition control Resting state Young smokers

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Bladder Wall Segmentation in MRI images via Deep Learning and Anatomical Constraints

Bladder Wall Segmentation in MRI Images via Deep Learning an...

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Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)

作者： Ruikun Li Huai Chen Guanzhong Gong Lisheng Wang Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai P. R. China Shandong Cancer Hospital Affiliated to Shandong University Jinan P. R. China

ISBN: (数字)9781728119908

ISBN: (纸本)9781728119915

Segmenting the bladder wall from MRI images is of great significance for the early detection and auxiliary diagnosis of bladder tumors. However, automatic bladder wall segmentation is challenging due to weak boundaries and diverse shapes of bladders. Level-set-based methods have been applied to this task by utilizing the shape prior of bladders. However, it is a complex operation to adjust multiple parameters manually, and to select suitable hand-crafted features. In this paper, we propose an automatic method for the task based on deep learning and anatomical constraints. First, the autoencoder is used to model anatomical and semantic information of bladder walls by extracting their low dimensional feature representations from both MRI images and label images. Then as the constraint, such priors are incorporated into the modified residual network so as to generate more plausible segmentation results. Experiments on 1092 MRI images shows that the proposed method can generate more accurate and reliable results comparing with related works, with a dice similarity coefficient (DSC) of 85.48%.

关键词： Bladder image segmentation Magnetic resonance imaging Shape Feature extraction Training Task analysis

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Mem Brain: An Easy-to-Use Online Webserver for Transmembrane Protein Structure Prediction

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Nano-Micro Letters 2018年第1期10卷 12-19页

作者： Xi Yin Jing Yang Feng Xiao Yang Yang Hong-Bin Shen Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Key Laboratory of System Control and Information Processing Ministry of Education of China Department of Computer Science Shanghai Jiao Tong University Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering

Membrane proteins are an important kind of proteins embedded in the membranes of cells and play crucial roles in living organisms, such as ion channels,transporters, receptors. Because it is difficult to determinate the membrane protein's structure by wet-lab experiments,accurate and fast amino acid sequence-based computational methods are highly desired. In this paper, we report an online prediction tool called Mem Brain, whose input is the amino acid sequence. Mem Brain consists of specialized modules for predicting transmembrane helices, residue–residue contacts and relative accessible surface area of a-helical membrane proteins. Mem Brain achieves aprediction accuracy of 97.9% of ATMH, 87.1% of AP,3.2 ± 3.0 of N-score, 3.1 ± 2.8 of C-score. Mem BrainContact obtains 62%/64.1% prediction accuracy on training and independent dataset on top L/5 contact prediction,respectively. And Mem Brain-Rasa achieves Pearson correlation coefficient of 0.733 and its mean absolute error of13.593. These prediction results provide valuable hints for revealing the structure and function of membrane *** Brain web server is free for academic use and available at ***/bioinf/Mem Brain/.

关键词： Transmembrane a-helices Structure prediction Machine learning Contact map prediction Relative accessible surface area

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Robust Visual Tracking via Online Discriminative and Low-Rank Dictionary Learning

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IEEE TRANSACTIONS ON CYBERNETICS 2018年第9期48卷 2643-2655页

作者： Zhou, Tao Liu, Fanghui Bhaskar, Harish Yang, Jie Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University Shanghai China Zero One Infinity Consulting Service Ltd. Mississauga ON Canada

In this paper, we propose a novel and robust tracking framework based on online discriminative and low-rank dictionary learning. The primary aim of this paper is to obtain compact and low-rank dictionaries that can provide good discriminative representations of both target and background. We accomplish this by exploiting the recovery ability of low-rank matrices. That is if we assume that the data from the same class are linearly correlated, then the corresponding basis vectors learned from the training set of each class shall render the dictionary to become approximately low-rank. The proposed dictionary learning technique incorporates a reconstruction error that improves the reliability of classification. Also, a multiconstraint objective function is designed to enable active learning of a discriminative and robust dictionary. Further, an optimal solution is obtained by iteratively computing the dictionary, coefficients, and by simultaneously learning the classifier parameters. Finally, a simple yet effective likelihood function is implemented to estimate the optimal state of the target during tracking. Moreover, to make the dictionary adaptive to the variations of the target and background during tracking, an online update criterion is employed while learning the new dictionary. Experimental results on a publicly available benchmark dataset have demonstrated that the proposed tracking algorithm performs better than other state-of-the-art trackers.

关键词： Dictionary learning likelihood function low-rank visual tracking

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Multiscale Deep Convolutional Networks for Characterization and Detection of Alzheimer's Disease Using MR images 26

Multiscale Deep Convolutional Networks for Characterization ...

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26th IEEE International Conference on image processing, ICIP 2019

作者： Ge, Chenjie Qu, Qixun Gu, Irene Yu-Hua Store Jakola, Asgeir Dept. of Electrical Engineering Chalmers University of Technology Sweden Inst. of Neuroscience and Physiology Sahlgrenska Academy University of Gothenburg Sweden Inst. of Image Processing and Pattern Recognition Shanghai Jiao Tong University China

ISBN: (纸本)9781538662496

This paper addresses the issues of Alzheimer's disease (AD) characterization and detection from Magnetic Resonance images (MRIs). Many existing AD detection methods use single-scale feature learning from brain scans. In this paper, we propose a multiscale deep learning architecture for learning AD features. The main contributions of the paper include: (a) propose a novel 3D multiscale CNN architecture for the dedicated task of AD detection;(b) propose a feature fusion and enhancement strategy for multiscale features;(c) empirical study on the impact of several settings, including two dataset partitioning approaches, and the use of multiscale and feature enhancement. Experiments were conducted on an open ADNI dataset (1198 brain scans from 337 subjects), test results have shown the effectiveness of the proposed method with test accuracy of 93.53%, 87.24% (best, average) on subject-separated dataset, and 99.44%, 98.80% (best, average) on random brain scan-partitioned dataset. Comparison with eight existing methods has provided further support to the proposed method. © 2019 IEEE.

关键词： Feature extraction Three-dimensional displays Training Alzheimer's disease Magnetic resonance imaging Testing

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Automatic Pulmonary Vein and Left Atrium Segmentation for TAPVC Preoperative Evaluation Using V-Net with Grouped Attention

Automatic Pulmonary Vein and Left Atrium Segmentation for TA...

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Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)

作者： Jiang Li Huai Chen Fang Zhu Chen Wen Huiwen Chen Lisheng Wang Department of Automation Shanghai Jiao Tong University Institute of Image Processing and Pattern Recognition Shanghai China Department of Cardiothoracic Surgery Shanghai Children’s Medical Center Shanghai Jiaotong University School of Medicine Shanghai China

ISBN: (数字)9781728119908

ISBN: (纸本)9781728119915

Accurate segmentation of pulmonary vein (PV) and left atrium (LA) is essential for the preoperative evaluation and planning of total anomalous pulmonary venous connection (TAPVC), which is a rare but mortal congenital heart disease of children. However, manual segmentation is time-consuming and insipid. To free radiologists from the repetitive work, we propose an automatic deep learning method to segment PV and LA from Low-Dose CT images. In the method, attention mechanism is incorporated into the widely used V-Net and a novel grouped attention module is applied to enforce the segmentation performance of the V-Net. We evaluate our method on 68 3D Low-Dose CT images scanned from patients with TAPVC. The experiment result shows that our method outperforms the popular 3D-UNet and V-Net, with mean dice similarity coefficient (DSC) of 0.795 and 0.834 for the PV and LA *** relevance-We proposed a CNNs-based method for the automatic segmentation of PV and LA with good accuracy, which can be used for the preoperative evaluation and planning of TAPVC. Our method can improve the efficiency and reduce the workloads of radiologists (400 milliseconds vs. 2-3 hours per-case).

关键词： image segmentation Computed tomography Three-dimensional displays Convolution Task analysis Predictive models Solid modeling

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ÆMMamba: An Efficient Medical Segmentation Model With Edge Enhancement

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IEEE Journal of Biomedical and Health Informatics 2025年 PP卷 PP页

作者： Dong, Xingbo Zhou, Bowen Yin, Chen Liao, Iman Yi Jin, Zhe Xu, Zhaozhao Pu, Bin Anhui University Anhui Provincial International Joint Research Center for Advanced Technology in Medical Imaging Hefei230093 China Shenzhen China Nanchang Hangkong University Jiangxi Provincial Key Laboratory of Image Processing and Pattern Recognition Nanchang330063 China University of Nottingham Malaysia Campus School of Computer Science Semenyih43500 Malaysia Henan Polytechnic University School of Computer Science and Technology Jiaozuo China Hunan University College of Computer Science and Electronic Engineering Changsha China

Medical image segmentation is critical for disease diagnosis, treatment planning, and prognosis assessment, yet the complexity and diversity of medical images pose significant challenges to accurate segmentation. While Convolutional Neural Networks capture local features and Vision Transformers excel in the global context, both struggle with efficient long-range dependency modeling. Inspired by Mamba's State Space Modeling efficiency, we propose ÆMMamba, a novel multi-scale feature extraction framework built on the Mamba backbone network. ÆMMamba integrates several innovative modules: the Efficient Fusion Bridge (EFB) module, which employs a bidirectional state-space model and attention mechanisms to fuse multi-scale features;the Edge-Aware Module (EAM), which enhances low-level edge representation using Sobel-based edge extraction;and the Boundary Sensitive Decoder (BSD), which leverages inverse attention and residual convolutional layers to handle cross-level complex boundaries. ÆMMamba achieves state-of-the-art performance across 8 medical segmentation datasets. On polyp segmentation datasets (Kvasir, ClinicDB, ColonDB, EndoScene, ETIS), it records the highest mDice and mIoU scores, outperforming methods like MADGNet and Swin-UMamba, with a standout mDice of 72.22 on ETIS, the most challenging dataset in this domain. For lung and breast segmentation, ÆMMamba surpasses competitors such as H2Former and SwinUnet, achieving Dice scores of 84.24 on BUSI and 79.83 on COVID-19 Lung. And on the LGG brain MRI dataset, ÆMMamba attains an mDice of 87.25 and an mIoU of 79.31, outperforming all compared methods. © 2013 IEEE.

关键词： image segmentation

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DAmageNet: A universal adversarial dataset

arXiv

引用

arXiv 2019年

作者： Chen, Sizhe Huang, Xiaolin He, Zhengbao Sun, Chengjin Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University MOE Key Laboratory of System Control and Information Processing 800 Dongchuan Road Shanghai200240 China

It is now well known that deep neural networks (DNNs) are vulnerable to adversarial attack. Adversarial samples are similar to the clean ones, but are able to cheat the attacked DNN to produce incorrect predictions in high confidence. But most of the existing adversarial attacks have high success rate only when the information of the attacked DNN is well-known or could be estimated by massive queries. A promising way is to generate adversarial samples with high transferability. By this way, we generate 96020 transferable adversarial samples from original ones in imageNet. The average difference, measured by root means squared deviation, is only around 3.8 on average. However, the adversarial samples are misclassified by various models with an error rate up to 90%. Since the images are generated independently with the attacked DNNs, this is essentially zero-query adversarial attack. We call the dataset DAmageNet, which is the first universal adversarial dataset that beats many models trained in imageNet. By finding the drawbacks, DAmageNet could serve as a benchmark to study and improve robustness of DNNs. DAmageNet could be downloaded in http://***/Show/56/122 Copyright © 2019, The Authors. All rights reserved.

关键词： Deep neural networks

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Mind the gap: Enlarging the domain gap in open set domain adaptation

arXiv

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arXiv 2020年

作者： Chang, Dongliang Sain, Aneeshan Ma, Zhanyu Song, Yi-Zhe Guo, Jun Pattern Recognition and Intelligent System Laboratory School of Artificial Intelligence Beijing University of Posts and Telecommunications Beijing100876 China Centre for Vision Speech and Signal Processing University of Surrey London United Kingdom

Unsupervised domain adaptation aims to leverage labeled data from a source domain to learn a classifier for an unlabeled target domain. Among its many variants, open set domain adaptation (OSDA) is perhaps the most challenging, as it further assumes the presence of unknown classes in the target domain. In this paper, we study OSDA with a particular focus on enriching its ability to traverse across larger domain gaps. Firstly, we show that existing state-of-the-art methods suffer a considerable performance drop in the presence of larger domain gaps, especially on a new dataset (PACS) that we re-purposed for OSDA. We then propose a novel framework to specifically address the larger domain gaps. The key insight lies with how we exploit the mutually beneficial information between two networks;(a) to separate samples of known and unknown classes, (b) to maximize the domain confusion between source and target domain without the influence of unknown samples. It follows that (a) and (b) will mutually supervise each other and alternate until convergence. Extensive experiments are conducted on Office-31, Office-Home, and PACS datasets, demonstrating the superiority of our method in comparison to other state-of-the-arts. Code available at https://***/dongliangchang/Mutual-to-Separate/ Copyright © 2020, The Authors. All rights reserved.

关键词： Machine learning

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