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arXiv 2022年

作者： Ilmer, Ilia Ovchinnikov, Alexey Soto, Pedro Pogudin, Gleb Program in Computer Science Graduate Center CUNY New YorkNY United States Program in Mathematics CUNY Queens College New YorkNY United States LIX CNRS École Polytechnique Institute Polytechnique de Paris Paris France

Structural global parameter identifiability indicates whether one can determine a parameter’s value from given inputs and outputs in the absence of noise. If a given model has parameters for which there may be infinitely many values, such parameters are called non-identifiable. We present a procedure for accelerating a global identifiability query by eliminating algebraically independent non-identifiable parameters. Our proposed approach significantly improves performance across different computer algebra frameworks. © 2022, CC BY-SA.

关键词： Algebra

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Genome data mining approach to identify potential protein in crop plants

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AIP Conference Proceedings 2024年第1期3026卷

作者： Joko Pebrianto Trinugroho Faisal Asadi Bens Pardamean Bioinformatics & Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Program Bina Nusantara University Jakarta Indonesia 11480

There is a need to produce more crop plants to meet the future global demand. However, the climate change has affected the global crop yield. Consequently, finding an alternative approach to improve crop yield becomes essential. The development of sequencing techniques, as well as information technologies, have enabled us to perform genome data mining. Using genome data mining approach, it is possible to identify or discover a protein which has a particular characteristic. This study aims to identify a protein, which could potentially improve crop yield, using genome data mining approach. D1 protein was used as the target, as this protein is highly involved in photosynthesis. Then, protein sequences of various crop plants were collected from biological database. After conducting data trimming and filtering, sequence analysis was performed. The analysis was used to construct phylogenetic tree and create a 3D protein model. Sequence analysis displayed variation in amino acid sequence in D1 protein. Protein modelling located the variations, which scattered within D1 protein. Furthermore, we highlighted the amino acid residues that are the targets for genetic engineering. The research findings may provide a reference to improve crop production through genome mining approach.

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AI-Based Feature Extraction and Cosine Similarity for Automation of Student Learning Assessment

AI-Based Feature Extraction and Cosine Similarity for Automa...

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Information Technology (ACIT)

作者： Bambang Dwi Wijanarko Bachtiar Rosilah Binti Hassan Dina Fitria Murad Ridho Bramulya Ihsan Yaya Heryadi Engkos Achmad Kuncoro Eka Julianti Computer Science Department BINUS Online Learning Bina Nusantara University Jakarta Indonesia Master of English Education Graduate School Universitas Terbuka Jakarta Indonesia Center for Cyber Security Faculty of Information Science and Technology Universiti Kebangsaan Malaysia Bangi Selangor Malaysia Information Systems Department BINUS Online Learning Bina Nusantara University Jakarta Indonesia Manajemen Department BINUS Online Learning Bina Nusantara University Jakarta Indonesia Computer Science Department BINUS Graduate Program-Doctor of Computer Science Bina Nusantara University Jakarta Indonesia Management Department BINUS Business School Undergraduate Program Bina Nusantara University Jakarta Indonesia Information System Department Universitas Terbuka Jakarta Indonesia

This research is ongoing research into the student learning process which aims to develop artificial intelligence-based technology to calculate essay exam scores automatically, based on the textual proximity of students' answers to the answer key. This research uses an approach based on natural language processing (NLP) and text analysis. Feature extraction was carried out using the BERT model and similarity comparison using the Cosine distance method. Model evaluation was carried out using sensitivity and specificity tests. The model evaluation results show a sensitivity of 98.21%, which means this assessment model is able to detect positive cases well.

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Reduction of Modal Logic and Realization in Justification Logic 13

Reduction of Modal Logic and Realization in Justification Lo...

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13th Conference on Advances in Modal Logic, AiML 2020

作者： Kushida, Hirohiko Computer Science Program The Graduate Center The City University of New York 365 Fifth Avenue New YorkNY10016 United States

ISBN: (纸本)9781848903418

In this paper, we first offer basic results regarding modal logic: (1) a wide range of modal systems can be syntactically reduced to the modal logic K in terms of theoremhood and (2) we can restrict the forms of modal axioms without changing their deductive power in that range of modal logics. Then, based on these results, we offer a new, simple, uniform, and modular proof-theoretical proof of the realization of a wide range of modal logics with possible combinations of modal axioms T,D, 4, 5 (including S5) in Justification Logic. We do not use a generalization of sequent calculus, such as hypersequent and nested sequent calculi. We simply utilize the standard cut-free sequent calculus for K and then show, in the realized proof in Justification Logic (corresponding to K), how to recover the realizations of the modal axioms by rewriting terms in the proof. © 2020 College Publications. All rights reserved.

关键词： Calculations

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Hamiltonicity via cohomology of right-angled Artin groups

arXiv

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arXiv 2021年

作者： Flores, Ramón Kahrobaei, Delaram Koberda, Thomas Department of Geometry and Topology University of Seville Spain Department of Computer Science University of York United Kingdom New York University Tandon School of Engineering PhD Program in Computer Science CUNY Graduate Center Department of Mathematics University of Virginia CharlottesvilleVA22904 United States

Let Γ be a finite graph and let A(Γ) be the corresponding right-angled Artin group. We characterize the Hamiltonicity of Γ via the structure of the cohomology algebra of A(Γ). In doing so, we define and develop a new canonical graph associated to a matrix, which as a consequence provides a novel perspective on the matrix determinant. Copyright © 2021, The Authors. All rights reserved.

关键词： Topology

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Chiral exceptional point enhanced active tuning and nonreciprocity in micro-resonators

arXiv

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arXiv 2024年

作者： Lee, Hwaseob Chang, Lorry Kecebas, Ali Mao, Dun Xiao, Yahui Li, Tiantian Alù, Andrea Özdemir, Sahin K. Gu, Tingyi Department of Electrical and Computer Engineering University of Delaware NewarkDE19716 United States Department of Engineering Science and Mechanics Pennsylvania State University University ParkPA16802 United States Photonics Initiative Advanced Science Research Center City University of New York New YorkNY10031 United States Physics Program Graduate Center City University of New York New YorkNY10016 United States Department of Electrical and Computer Engineering Saint Louis University Saint LouisMO63103 United States

Exceptional points (EPs) have been extensively explored in mechanical, acoustic, plasmonic, and photonic systems. However, little is known about the role of EPs in tailoring the dynamic tunability of optical devices. A specific type of EPs known as chiral EPs has recently attracted much attention for controlling the flow of light and for building sensors with better responsivity. A recently demonstrated route to chiral EPs via lithographically defined symmetric Mie scatterers on the rim of resonators has not only provided the much-needed mechanical stability for studying chiral EPs, but also helped reduce losses originating from nanofabrication imperfections, facilitating the insitu study of chiral EPs and their contribution to the dynamics and tunability of resonators. Here, we use asymmetric Mie scatterers to break the rotational symmetry of a microresonator, to demonstrate deterministic thermal tuning across a chiral EP, and to demonstrate EP-mediated chiral optical nonlinear response and efficient electro-optic tuning. Our results indicate asymmetric electro-optic modulation with up to 17dB contrast at GHz and CMOS-compatible voltage levels. Such wafer-scale nano-manufacturing of chiral electro-optic modulators and the chiral EP-tailored tunning may facilitate new micro-resonator functionalities in quantum information processing, electromagnetic wave control, and optical interconnects. © 2024, CC BY.

关键词： Microresonators

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Enhanced IGF-IIRα Expression Exacerbates Lipopolysaccharide-Induced Cardiac Inflammation, Hypertrophy, and Apoptosis Through Calcineurin Activation

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Environmental Toxicology 2024年第11期39卷 5173-5186页

作者： Boonha, Khwanchit Kuo, Wei-Wen Tsai, Bruce Chi-Kang Hsieh, Dennis Jine-Yuan Lin, Kuan-Ho Lu, Shang-Yeh Kuo, Chia-Hua Yang, Liang-Yo Huang, Chih-Yang Graduate Institute of Biomedical Sciences China Medical University Taichung Taiwan Cardiovascular and Mitochondrial Related Disease Research Center Hualien Tzu Chi Hospital Buddhist Tzu Chi Medical Foundation Hualien Taiwan Faculty of Tropical Medicine Mahidol University Bangkok Thailand Department of Biological Science and Technology College of Life Sciences China Medical University Taichung Taiwan PhD Program for Biotechnology Industry China Medical University Taichung Taiwan School of Pharmacy China Medical University Taichung Taiwan Department of Medical Laboratory and Biotechnology Chung Shan Medical University Taichung Taiwan Clinical Laboratory Chung Shan Medical University Hospital Taichung Taiwan Department of Emergency Medicine China Medical University Hospital Taichung Taiwan College of Medicine China Medical University Taichung Taiwan Division of Cardiovascular Medicine Department of Internal Medicine China Medical University Hospital Taichung Taiwan Laboratory of Exercise Biochemistry University of Taipei Taipei Taiwan Institute of Sports Sciences University of Taipei Taipei Taiwan Department of Kinesiology and Health Science College of William and Mary WilliamsburgVA United States School of Physical Education and Sports Science Soochow University Suzhou China Department of Physiology School of Medicine College of Medicine China Medical University Taichung Taiwan Laboratory for Neural Repair China Medical University Hospital Taichung Taiwan Department of Medical Research China Medical University Hospital China Medical University Taichung Taiwan Department of Medical Laboratory Science and Biotechnology Asia University Taichung Taiwan Center of General Education Buddhist Tzu Chi Medical Foundation Tzu Chi University of Science and Technology Hualien Taiwan

Cardiovascular disease is one of the leading causes of death worldwide and has a high prevalence. Insulin-like growth factor-II receptor α (IGF-IIRα) acts as a stress-inducible negative regulator. This study focused on the substantial impact of heightened expression of IGF-IIRα in cardiac myoblasts and its association with the exacerbation of cardiac dysfunction. Using lipopolysaccharide (LPS)-induced H9c2 cardiac myoblasts as a model for sepsis, we aimed to elucidate the molecular interactions between IGF-IIRα and LPS in exacerbating cardiac injury. Our findings demonstrated a synergistic induction of cardiac inflammation and hypertrophy by LPS stimulation and IGF-IIRα overexpression, leading to decreased cell survival. Excessive calcineurin activity, triggered by this combined condition, was identified as a key factor exacerbating the negative effects on cell survival. Cellular changes such as cell enlargement, disrupted actin filaments, and upregulation of hypertrophy-related and inflammation-related proteins contributed to the overall hypertrophic and inflammatory responses. Overexpression of IGF-IIRα also exacerbated apoptosis induced by LPS in H9c2 cardiac myoblasts. Inhibiting calcineurin in LPS-treated H9c2 cardiac myoblasts with IGF-IIRα overexpression effectively reversed the detrimental effects, reducing cell damage and mitigating apoptosis-related cardiac mechanisms. Our study suggests that under sepsis-like conditions in the heart with IGF-IIRα overexpression, hyperactivation of calcineurin worsens cardiac damage. Suppressing IGF-IIRα and calcineurin expression could be a potential intervention to alleviate the impact of the illness and improve cardiac function. © 2024 Wiley Periodicals LLC.

关键词： Heart

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Pyramid Scene Parsing Net Model for Automated Paddy Field Map using SPOT 6 Satellite Images

Pyramid Scene Parsing Net Model for Automated Paddy Field Ma...

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IEEE Asia-Pacific Conference on Geoscience, Electronics and Remote Sensing Technology (AGERS)

作者： Yaya Heryadi Edy Irwansyah Eka Miranda Haryono Soeparno Herlawati Kiyota Hashimoto Computer Science Department BINUS Graduate Program-Doctor of Computer Science Bina Nusantara University Jakarta Indonesia Computer Science Department School of Computer Science Bina Nusantara University Jakarta Indonesia Information Systems Department School of Information Systems Bina Nusantara University Jakarta Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia Faculty of Technology and Environment Prince of Songkla University Phuket Thailand

Food sustainability is still one of the main priorities for many countries as it contributes to the economy and stability of the nation. For government in many countries whose peoples consumes rice as its staple food, food self-sufficiency initiatives highly depend on accurate prediction of paddy field map. Mapping paddy field task is a challenging problem which cannot be handled manually especially when the paddy fields are spread out in very wide geographical areas such as those in Indonesia. Fortunately, wide availability of satellite imagery and the advent of deep learning technology in the past ten years have made it possible to improve efficiency of most parts of those manual works involving image semantic segmentation tasks. However, satellite image-based semantic segmentation is a challenging task. High object complexity, cloud partial occlusion, larger image size than a computer memory can stored can hinder accuracy of the image segmentation results. This paper presents a method for paddy field map generating using semantic image segmentation approach in which Pyramid Scene Parsing Net model is used for segmenting satellite imagery. The generated paddy map can be used as a basis for decision-making, especially in the agricultural sector. Analysis of local land use/land cover dynamics. The results of his experiments using SPOT 6 satellite imagery from the Pahung region of Central Kalimantan achieved average training accuracy, best training accuracy and test accuracy of 0.85, 0.86 and 0.89 respectively. These results indicated that the semantic segmentation model is suitable for addressing the same task in different crops.

关键词： Training Productivity Deep learning Satellites Semantic segmentation Crops Predictive models

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A Lattice Boltzmann Method to Quantify the Rare Event Driven Far-Field Impact of Ocean Oil Spills

SSRN

引用

SSRN 2023年

作者： Zhang, Zhanyang Schäfer, Tobias Kress, Michael E. Computer Science Department College of Staten Island City University of New York 2800 Victory Boulevard Staten IslandNY10314 United States Doctoral Program in Computer Science The Graduate Center City University of New York 365 5th Avenue New YorkNY10016 United States Mathematics Department College of Staten Island City University of New York 2800 Victory Boulevard Staten IslandNY10314 United States Doctoral Program in Physics The Graduate Center City University of New York 365 5th Avenue New YorkNY10016 United States

When oil is released in ocean waters, some regions, e.g. shrimp farms, are susceptible to oil contamination, even at large distances from the spilling source. In this work, we focus on situations where the majority of the oil is expected to not reach these areas. Due to the interplay of advection and diffusion, still small amounts of oil endanger the region. Then, the effect of the pollution is governed by rare events of oil particles reaching the area under consideration posing a modeling *** compare predictions obtained (1) by GNOME (General NOAA Operational Modeling Environment), a tool developed and used by NOAA, and (2) simulation results from our adaptation of the Lattice Boltzmann Method (LBM) focusing on such areas at larger distances from the oil release. We illustrate the performance of both methods by considering a subarea of the Gulf of Mexico and obtaining the surface velocity field from the Unified Wave Interface-Coupled Model (UWIN-CM). Our initial findings are that the Lattice-Boltzmann approach, due to its algorithmic efficiency, shows advantages over GNOME and should be considered as a possible choice when using simulations in order to predict the likelihood of oil reaching regions far from the main oil spill. © 2023, The Authors. All rights reserved.

关键词： Oil spills

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Topological Learning for Motion Data via Mixed Coordinates

arXiv

引用

arXiv 2023年

作者： Luo, Hengrui Kim, Jisu Patania, Alice Vejdemo-Johansson, Mikael Lawrence Berkeley National Laboratory United States DataShape team Inria Saclay LMO Université Paris-Saclay France Department of Mathematics and Statistics University of Vermont United States Department of Mathematics CUNY College of Staten Island and Computer Science Program CUNY Graduate Center United States

Topology can extract the structural information in a dataset efficiently. In this paper, we attempt to incorporate topological information into a multiple output Gaussian process model for transfer learning purposes. To achieve this goal, we extend the framework of circular coordinates into a novel framework of mixed valued coordinates to take linear trends in the time series into consideration. One of the major challenges to learn from multiple time series effectively via a multiple output Gaussian process model is constructing a functional kernel. We propose to use topologically induced clustering to construct a cluster based kernel in a multiple output Gaussian process model. This kernel not only incorporates the topological structural information, but also allows us to put forward a unified framework using topological information in time and motion series. Copyright © 2023, The Authors. All rights reserved.

关键词： Time series

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