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Statistical analysis and data visualization of Indonesia and Malaysia SARS Cov-2 metadata

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AIP Conference Proceedings 2023年第1期2594卷

作者： D. Sudigyo A. Budiarto B. Pardamean Bioinformatics & Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department School of Computer Science Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Program Bina Nusantara University Jakarta Indonesia 11480

SARS CoV-2 is a fascinating topic to investigate, especially in Indonesia and Malaysia, which share similar racial demographics. However, statistical analysis of information on the SARS CoV-2 from a database, especially GISAID, does not contain specific customizations related to virus comparisons between selected countries. Therefore, the researchers conducted statistical analysis and data visualization using the Python programming language to describe and investigate SARS CoV-2 Indonesia and Malaysia from the GISAID database. SARS CoV-2 metadata from Indonesia (N=117) and Malaysia (N=250), which were gathered during 2020, were compared. This comparison was aimed to investigate the discrepancies of COVID-19 cases in closely related populations. Firstly, data visualization was conducted using the Python Matplotlib library to create bar charts for clades and mutation comparison. Additionally, a series of boxplots were generated to show age discrepancies stratified by gender. Furthermore, the statistical tests showed that only the dominant Malaysian (G and O) clades were found to be significantly different compared to Indonesian cases (p-value=0.016). The proportion of two major mutations (G614D and NSP12 P323L) were also significantly different in the two countries caused by the dominant clade differences (p-value=0.007). Lastly, the differences in the age distribution of COVID-19 cases between the two countries were significant only in the male group (p-value=0.017).

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AI-Based Ripeness Grading for Oil Palm Fresh Fruit Bunch in Smart Crane Grabber 3

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AI-Based Ripeness Grading for Oil Palm Fresh Fruit Bunch in ...

3rd International Conference on Eco Engineering Development, ICEED 2019

作者： Harsawardana Rahutomo, Reza Mahesworo, Bharuno Cenggoro, Tjeng Wawan Budiarto, Arif Suparyanto, Teddy Surya Atmaja, Don Bosco Samoedro, Bayu Pardamean, Bens Institut Pertanian STIPER Yogyakarta55281 Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia Computer Science Department School of Computer Science Bina Nusantara University Jakarta11480 Indonesia Mechatronics and AI Research and Development Center Biotechnic Innovation Yogyakarta55281 Indonesia Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta11480 Indonesia

Indonesia is one of the biggest palm oil exporters in the world. For Indonesia to stay competitive in thepalm oil industry, the harvesting and evacuating process in its oil palm plantation need to be optimized. This research introduces machinerycalled as Smart Crane Grabber. This machinery can be used for automatic harvesting and evacuation process of oil palm fresh fruit bunch. To enable automation, Smart Crane Grabber is equipped with an Artificial Intelligencesystem for automatic ripeness sorting. TheArtificial Intelligence system developed for Smart Crane Grabber achieves 71.34% accuracy by using only 400 images as preliminary training data. © 2020 Published under licence by IOP Publishing Ltd.

关键词： Palm oil

Structural analysis based on unsupervised learning: Search for a characteristic low-dimensional space by local structures in atomistic simulations

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Physical Review B 2022年第7期105卷 075107-075107页

作者： Ryo Tamura Momo Matsuda Jianbo Lin Yasunori Futamura Tetsuya Sakurai Tsuyoshi Miyazaki International Center for Materials Nanoarchitectonics National Institute for Materials Science Tsukuba 305-0044 Japan Research and Services Division of Materials Data and Integrated System National Institute for Materials Science Tsukuba 305-0044 Japan Graduate School of Frontier Sciences The University of Tokyo Chiba 277-8568 Japan Department of Computer Science University of Tsukuba Tsukuba 305-8573 Japan Center for Artificial Intelligence University of Tsukuba Tsukuba 305-8573 Japan Master's/Doctoral Program in Life Science Innovation University of Tsukuba Tsukuba 305-8577 Japan

Owing to the advances in computational techniques and the increase in computational power, atomistic simulations of materials can simulate large systems with higher accuracy. Complex phenomena can be observed in such state-of-the-art atomistic simulations. However, it has become increasingly difficult to understand what is actually happening and mechanisms, for example, in molecular dynamics (MD) simulations. We propose an unsupervised machine learning method to analyze the local structure around a target atom. The proposed method, which uses the two-step locality preserving projections (TS-LPP), can find a low-dimensional space wherein the distributions of data points for each atom or groups of atoms can be properly captured. We demonstrate that the method is effective for analyzing the MD simulations of crystalline, liquid, and amorphous states and the melt-quench process from the perspective of local structures. The proposed method is demonstrated on a silicon single-component system, a silicon-germanium binary system, and a copper single-component system.

关键词： Amorphous materials Machine learning Molecular dynamics

Synthetic helicoidal rotation of a quasielectrostatic ring resonator for ultrabroadband magnet-free nonreciprocity

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Physical Review Applied 2024年第6期22卷 064020-064020页

作者： Aravind Nagulu Ahmed Mekawy Mykhailo Tymchenko Dimitrios Sounas Harish Krishnaswamy Andrea Alù Department of Electrical and Systems Engineering Washington University in St. Louis St. Louis Missouri 63130 USA Photonics Initiative Advanced Science Research Center City University of New York New York New York 10031 USA Department of Electrical and Computer Engineering The University of Texas at Austin Austin Texas 78712 USA Department of Electrical Engineering Wayne State University Detroit Michigan 48202 USA Department of Electrical Engineering Columbia University New York New York 10027 USA Physics Program Graduate Center City University of New York New York New York 10016 USA

Suitably tailored forms of spatiotemporal modulation in electronic circuit networks have been recently employed to overcome fundamental challenges in modern electronic systems, including breaking reciprocity, squeezing the footprint of high-Q resonators, and overcoming the delay-bandwidth limit. Rotating patterns of temporal modulations have been used to synthesize angular momentum, which replaces magnetic bias to break reciprocity in integrated circuits. However, this approach is limited by trade-offs between modulation speed, footprint, and bandwidth of operation. Rotating switching patterns in commutated capacitor networks also enables compact filters and quasielectrostatic wave propagation, overcoming the delay-bandwidth limit. In this paper, we combine these mechanisms in an integrated-circuit ring that synthetically rotates in two dimensions, realizing an effective helicoidal motion that provides ultrabroadband quasielectrostatic nonreciprocal responses fitting within a theoretically infinitesimal size. We also analyze the impact of modulation signal noise on time-modulated nonreciprocal components and unveil the role of a dynamic noise mechanism based on which the noise level increases in the presence of a strong signal passing through the component, along with methods to mitigate this effect. We experimentally verify these principles in a three-port integrated circulator based on a 65-nm CMOS process that operates from dc to 1 GHz with a miniaturization factor of 2 × 106.

关键词： Metamaterials Non-reciprocal transmission Photonics Topolectrical circuits

Web-based structural identifiability analyzer

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arXiv 2021年

作者： Ilmer, Ilia Ovchinnikov, Alexey Pogudin, Gleb Ph.D. Program in Computer Science CUNY Graduate Center New York United States Department of Mathematics CUNY Queens College Ph.D. Programs in Mathematics and Computer Science CUNY Graduate Center New York United States LIX CNRS École Polytechnique Institute Polytechnique de Paris France

Parameter identifiability describes whether, for a given differential model, one can determine parameter values from model equations. Knowing global or local identifiability properties allows construction of better practical experiments to identify parameters from experimental data. In this work, we present a web-based software tool that allows to answer specific identifiability queries. Concretely, our toolbox can determine identifiability of individual parameters of the model and also provide all functions of parameters that are identifiable (also called identifiable combinations) from single or multiple experiments. The program is freely available at https://***/app/6509768948056064. © 2021, CC BY-SA.

关键词： Websites

Skin effect in Non-Hermitian systems with spin

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arXiv 2024年

作者： Zhang, Wenna Hu, Yutao Zhang, Hongyi Liu, Xiang Shen, Yuecheng Veronis, Georgios Alù, Andrea Huang, Yin Luo, Wenchen School of Physics Central South University Changsha410083 China Shenzhen Institute for Quantum Science and Engineering Southern university of science and technology Shenzhen518055 China State Key Laboratory of Precision Spectroscopy East China Normal University Shanghai200241 China School of Electrical Engineering and Computer Science Louisiana State University Baton RougeLA70803 United States Center for Computation and Technology Louisiana State University Baton RougeLA70803 United States Photonics Initiative Advanced Science Research Center City University of New York New YorkNY10031 United States Physics Program Graduate Center City University of New York New YorkNY10026 United States

The skin effect, where bulk modes collapse into boundary modes, is a key phenomenon in topological non-Hermitian systems, has been predominantly studied in spinless systems. Recent studies illustrate the magnetic suppression of the first-order skin effect while ignoring spin. However, the physical significance of a magnetic field in non-Hermitian skin effect with spin remains elusive. Here, we systematically explore non-Hermitian spinful systems based on generalized Hatano-Nelson models with SU(2) gauge potential fields. In an open one-dimensional lattice, the spin-up and spin-down states can be uniquely separated and localized at the two boundaries without magnetic field. When an external magnetic field is applied, the skin effect exhibits a smooth transition from bidirectional to unidirectional. Remarkably, we demonstrate that the first-order skin effect can be anomalously induced by a magnetic field in a topologically trivial non-Hermitian spinful system without any skin effect at zero field. The direction of such magnetically induced skin modes can be controlled by simply changing the amplitude and polarity of the magnetic field. In addition, we demonstrate a transition between non-Bloch PT and anti-PT symmetries in the system, and uncover the spin-dependent mechanism of non-Bloch PT symmetry. Our results pave the way for the investigation of non-Hermitian skin effect with spin degrees of freedom. © 2024, CC BY.

关键词： Magnetic field effects

Transfer Learning for Keypoint Detection in Low-Resolution Thermal TUG Test Images

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arXiv 2025年

作者： Chen, Wei-Lun Hsieh, Chia-Yeh Kao, Yu-Hsiang Liu, Kai-Chun Peng, Sheng-Yu Tsao, Yu Research Center for Information Technology Innovation Academic Sinica Taiwan Graduate Institute of Electrical Engineering National Taiwan University Taiwan Bachelor’s Program in Medical Informatics and Innovative Applications Fu Jen Catholic University Taiwan Department of Electrical Engineering National Taiwan University Taiwan College of Information and Computer Sciences University of Massachusetts AmherstMA01003 United States Department of Electrical Engineering National Taiwan University of Science of Technology Taiwan

This study presents a novel approach to human keypoint detection in low-resolution thermal images using transfer learning techniques. We introduce the first application of the Timed Up and Go (TUG) test in thermal image computer vision, establishing a new paradigm for mobility assessment. Our method leverages a MobileNetV3-Small encoder and a ViTPose decoder, trained using a composite loss function that balances latent representation alignment and heatmap accuracy. The model was evaluated using the Object Keypoint Similarity (OKS) metric from the COCO Keypoint Detection Challenge. The proposed model achieves better performance with AP, AP50, and AP75 scores of 0.861, 0.942, and 0.887 respectively, outperforming traditional supervised learning approaches like Mask R-CNN and ViTPose-Base. Moreover, our model demonstrates superior computational efficiency in terms of parameter count and FLOPS. This research lays a solid foundation for future clinical applications of thermal imaging in mobility assessment and rehabilitation monitoring. Copyright © 2025, The Authors. All rights reserved.

关键词： Thermography (imaging)

Statistical Analysis of Intrinsic High-Frequency Characteristic Fluctuation of Emerging Silicon Gate-All-Around Nanosheet (NS) MOSFETs at Sub-3-nm Nodes

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Statistical Analysis of Intrinsic High-Frequency Characteris...

IEEE Electron Devices Technology and Manufacturing Conference (EDTM)

作者： Sekhar Reddy Kola Yiming Li Min-Hui Chuang Kazuhiko Endo Seiji Samukawa Parallel and Scientific Computing Laboratory Electrical Engineering and Computer Science International Graduate Program Institute of Communications Engineering Department of Electronics and Electrical Engineering Institute of Biomedical Engineering Center for mm Wave Smart Radar System and Technologies National Yang Ming Chiao Tung University Hsinchu Taiwan Institute of Fluid Science Tohoku University 2-1-1 Katahira Aoba-ku Sendai Japan National Institute of Advanced Industrial Science and Technology Tsukuba Japan

In recent years, the GAA NS Si MOSFET has been explored as a leading technology. However, the intrinsic parameters of GAA NS Si MOSFETs are affected to varying degrees by various fluctuation sources, Statistically independent and identically distributed $(iid)$ assumptions on the aforementioned random variables overestimate the variability of high-frequency characteristics, compared with considering all fluctuation factors simultaneously. Notably, the random nanosized metal grains dominates the variations of voltage gain, cut-off frequency, and 3dB frequency because the random work functions strongly alter the channel surface potential.

关键词： MOSFET Fluctuations Statistical analysis Gallium arsenide Cutoff frequency Metals Logic gates

Physics-aware Graph Neural Network for Accurate RNA 3D Structure Prediction

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arXiv 2022年

作者： Zhang, Shuo Liu, Yang Xie, Lei Ph.D. Program in Computer Science Graduate Center City University of New York United States Department of Computer Science Hunter College City University of New York United States Helen & Robert Appel Alzheimer’s Disease Research Institute Feil Family Brain & Mind Research Institute Weill Cornell Medicine Cornell University United States

Biological functions of RNAs are determined by their three-dimensional (3D) structures. Thus, given the limited number of experimentally determined RNA structures, the prediction of RNA structures will facilitate elucidating RNA functions and RNA-targeted drug discovery, but remains a challenging task. In this work, we propose a Graph Neural Network (GNN)-based scoring function trained only with the atomic types and coordinates on limited solved RNA 3D structures for distinguishing accurate structural models. The proposed Physics-aware Multiplex Graph Neural Network (PaxNet) separately models the local and non-local interactions inspired by molecular mechanics. Furthermore, PaxNet contains an attention-based fusion module that learns the individual contribution of each interaction type for the final prediction. We rigorously evaluate the performance of PaxNet on two benchmarks and compare it with several state-of-the-art baselines. The results show that PaxNet significantly outperforms all the baselines overall, and demonstrate the potential of PaxNet for improving the 3D structure modeling of RNA and other macromolecules. Our code is available at https://***/zetayue/Physics-aware-Multiplex-GNN. Copyright © 2022, The Authors. All rights reserved.

关键词： RNA