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Structural insights into light harvesting by antenna-containing rhodopsins in marine Asgard archaea

Nature microbiology 2025年第6期10卷 1484-1500页

作者： Gali Tzlil María Del Carmen Marín Yuma Matsuzaki Probal Nag Shota Itakura Yosuke Mizuno Shunya Murakoshi Tatsuki Tanaka Shirley Larom Masae Konno Rei Abe-Yoshizumi Ana Molina-Márquez Daniela Bárcenas-Pérez José Cheel Michal Koblížek Rosa León Kota Katayama Hideki Kandori Igor Schapiro Wataru Shihoya Osamu Nureki Keiichi Inoue Andrey Rozenberg Ariel Chazan Oded Béjà Faculty of Biology Technion-Israel Institute of Technology Haifa Israel. Physical and Analytical Chemistry Department University of Jaén Jaén Spain. Department of Biological Sciences Graduate School of Science The University of Tokyo Tokyo Japan. Fritz Haber Center for Molecular Dynamics Research Institute of Chemistry The Hebrew University of Jerusalem Jerusalem Israel. Department of Life Science and Applied Chemistry Nagoya Institute of Technology Nagoya Japan. The Institute for Solid State Physics The University of Tokyo Kashiwa Japan. Laboratory of Biochemistry and Molecular Biology Faculty of Experimental Sciences Marine International Campus of Excellence (CEIMAR) University of Huelva Huelva Spain. Centre Algatech Institute of Microbiology Czech Academy of Sciences Třeboň Czech Republic. Faculty of Science University of South Bohemia České Budějovice Czech Republic. OptoBioTechnology Research Center Nagoya Institute of Technology Nagoya Japan. Department of Physics Technische Universität Dortmund Germany. Research Center Chemical Sciences and Sustainability University Alliance Ruhr Bochum Germany. Department of Biological Sciences Graduate School of Science The University of Tokyo Tokyo Japan. wtrshh9@***. Department of Biological Sciences Graduate School of Science The University of Tokyo Tokyo Japan. nureki@bs.s.u-tokyo.ac.jp. The Institute for Solid State Physics The University of Tokyo Kashiwa Japan. inoue@issp.u-tokyo.ac.jp. Faculty of Biology Technion-Israel Institute of Technology Haifa Israel. alephreish@***. Faculty of Biology Technion-Israel Institute of Technology Haifa Israel. achazan@ethz.ch. Institute of Environmental Engineering ETH Zurich Switzerland. achazan@ethz.ch. Faculty of Biology Technion-Israel Institute of Technology Haifa Israel. beja@technion.ac.il. The Nancy and Stephen Grand Technion Energy Program (GTEP) Technion-Israel Institute of Technology Haifa Israel. beja@technion.ac.il.

Aquatic bacterial rhodopsin proton pumps harvest light energy for photoheterotrophic growth and are known to contain hydroxylated carotenoids that expand the wavelengths of light utilized, but these have not been characterized in marine archaea. Here, by combining a marine chromophore extract with purified archaeal rhodopsins identified in marine metagenomes, we show light energy transfer from diverse hydroxylated carotenoids to heimdallarchaeial rhodopsins (HeimdallRs) from uncultured marine planktonic members of 'Candidatus Kariarchaeaceae' ('Candidatus Asgardarchaeota'). These light-harvesting antennas absorb in the blue-light range and transfer energy to the green-light-absorbing retinal chromophore within HeimdallRs, enabling the use of light that is otherwise unavailable to the rhodopsin. Furthermore, we show elevated proton pumping by the antennas in HeimdallRs under white-light illumination, which better simulates the light conditions encountered by these archaea in their natural habitats. Our results indicate that light-harvesting antennas in microbial rhodopsins exist in families beyond xanthorhodopsins and proteorhodopsins and are present in both marine bacteria and archaea.

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Sustainability assessment of groundwater in south-eastern parts of the western region of Ghana for water supply

Cleaner Water

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Cleaner Water 2024年 1卷

作者： Ernest Biney Bernard Akwasi Mintah Ernest Ankomah Albert Elikplim Agbenorhevi Daniel Buston Yankey Ernestina Annan Department of Geomatic Engineering Kwame Nkrumah University of Science and Technology University Post Office Box PMB Kumasi Ghana WASCAL Graduate Research Programme on Climate Change and Land Use Department of Civil Engineering Kwame Nkrumah University of Science and Technology Kumasi Ghana Department of Geological Engineering University of Mines and Technology Tarkwa Ghana Graduate Research Program on Climate Change and Water Resources West African Science Service Center on Climate Change and Adapted Land Use (WASCAL) University of Abomey-Calavi Benin

The study assessed the physicochemical and biological properties of selected groundwater sources in the Southeastern part of the Western Region, to assess the impact on water quality and health risk. The Piper Trilinear plot was used to categorize the water samples into water types based on the dominant anion and cation concentrations. Statistical analysis (One way ANOVA and two sample t-test) was used to determine the sources of variation in the data at 95% confidence interval. The Water Quality Index (WQI) and Hazard Quotient (HQ) were used to estimate the water quality and health risk respectively. TDS and turbidity were above the acceptable WHO guidelines in 16.7% of the samples with a mildly acidic pH in 83.3% of the water samples. Also, 91.7% of the water samples were contaminated with total coliform (TC) and 25% with e-coli. Generally, the groundwater samples were dominated by Ca 2+ and HCO 3- ion water types. The variations between parameters were found not significant for all the parameters (p>0.05). Water samples in the North are of good quality with a mean WQI of 96, but of poor quality in the South with a mean WQI of 144.6. HQ values for all the samples were less than 0.1, suggesting less harmful impacts of the heavy metal concentrations on human health. Overall, the results showed the presence of heavy metals in the groundwater sources sampled, however in quantities with low health risks either through oral or dermal channels. Groundwater within the communities is good for domestic purposes but needs treatment for drinking. To improve upon the study, it is recommended that further studies consider a higher number of samples and include other accessible groundwater stations where possible.

关键词： Health Risk Assessment Groundwater GIS Trace elements Water Quality Index

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Ohwia caudata extract relieves the IL-17A-induced inflammatory response of synoviocytes through modulation of SOCS3 and JAK2/STAT3 activation

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Environmental Toxicology 2023年第8期38卷 1914-1924页

作者： Lu, Cheng-You Kuo, Chia-Hua Kuo, Wei-Wen Hsieh, Dennis Jine-Yuan Wang, Tso-Fu Shih, Cheng-Yen Lin, Pi-Yu Lin, Shinn-Zong Ho, Tsung-Jung Huang, Chih-Yang Department of Post-Baccalaureate Medicine College of Medicine National Chung Hsing University Taichung Taiwan Department of Sports Sciences University of Taipei Taipei Taiwan Department of Biological Science and Technology China Medical University Taichung Taiwan Ph.D. Program for Biotechnology Industry China Medical University Taichung Taiwan School of Medical Laboratory and Biotechnology Chung Shan Medical University Taichung Taiwan Clinical Laboratory Chung Shan Medical University Hospital Taichung Taiwan Department of Hematology and Oncology Hualien Tzu Chi Hospital Buddhist Tzu Chi Medical Foundation Hualien Taiwan Department of Medicine Hualien Tzu Chi Hospital Buddhist Tzu Chi Medical Foundation Tzu Chi University Hualien Taiwan Buddhist Tzu Chi Medical Foundation Hualien Taiwan Buddhist Compassion Relief Tzu Chi Foundation Hualien Taiwan Bioinnovation Center Buddhist Tzu Chi Medical Foundation Hualien Taiwan Department of Neurosurgery Hualien Tzu Chi Hospital Buddhist Tzu Chi Medical Foundation Hualien Taiwan Integration of Chinese Medicine and Modern Medicine Hualien Tzu Chi Hospital Buddhist Tzu Chi Medical Foundation Hualien Taiwan Department of Chinese Medicine Hualien Tzu Chi Hospital Buddhist Tzu Chi Medical Foundation Hualien Taiwan Cardiovascular and Mitochondrial Related Disease Research Center Hualien Tzu Chi Hospital Buddhist Tzu Chi Medical Foundation Hualien Taiwan Graduate Institute of Biomedical Sciences China Medical University Taichung Taiwan Department of Biological Science and Technology Asia University Taichung Taiwan Center of General Education Buddhist Tzu Chi Medical Foundation Tzu Chi University of Science and Technology Hualien Taiwan

Fibroblast-like synoviocytes accumulation, proliferation and activation, and the subsequent inflammatory mediators production play a key role in the progression of rheumatoid arthritis (RA). It is well established that Janus kinase 2/signal transducer and activator of transcription 3 (JAK2/STAT3) signaling triggers inflammation, and induces cytokine levels in RA. Ohwia caudata have long been used against many disorders. However, in RA, the effects of O. caudata have not been elucidated. In the current study, synoviocytes were used to evaluate the suppressive effects of O. caudate extract (OCE) on the pro-inflammatory cytokines production. In vitro, the underlying mechanisms by which OCE inhibits inflammatory response through regulation of suppressors of cytokine signaling 3 (SOCS3) and JAK2/STAT3 expression in IL-17A-treated HIG-82 synoviocytes were investigated. The results demonstrated that the proliferation of IL-17A-challenged cells were increased in comparison with non-stimulated control cells. The synoviocyte proliferation was decreased significantly of OCE concentrations in dose dependent manner. The p-JAK2, p-STAT3, interleukin (IL)-1β, and IL-6 were reduced in IL-17A-challenged cells treated with OCE. Furthermore, AZD1480 (a JAK2-specific inhibitor) or WP1066 (a STAT3-specific inhibitor) affected the inflammatory mediators production in IL-17A-challenged synoviocytes, and OCE failed to mitigate the IL-17A-induced inflammatory mediators and SOCS3, acting as a feedback inhibitor of the JAK/STAT3 pathway, in the presence of SOCS3 siRNA, indicating that the beneficial effects of OCE on the regulation of inflammatory response homeostasis were dependent on SOCS3 and the JAK2/STAT3 signaling pathway. Our study also showed that SOCS3 was markedly activated by OCE in RA fibroblast-like synoviocytes, thereby decreasing the JAK/STAT3 pathway, and the IL-1β, and IL-6 activation. Thus, O. caudate should be further investigated as a candidate anti-inflammatory and anti-a

关键词： Chemical activation

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Retraction notice to "Microplastic occurrence in commercial crab (Portunus segnis) from the western coast of India and pollution indices: First investigation and evidence" [Sci. Total Environ. 905 (2023) 167500]

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The science of the total environment 2024年 957卷 177729页

作者： Vasantkumar Rabari Md Refat Jahan Rakib Jigneshkumar Trivedi Abubakr M Idris Guilherme Malafaia Animal Taxonomy and Ecology Laboratory Department of Life Sciences Hemchandracharya North Gujarat University Patan 384265 Gujarat India. Department of Fisheries and Marine Science Faculty of Science Noakhali Science and Technology University Noakhali Bangladesh. Department of Chemistry College of Science King Khalid University 61431 Abha Saudi Arabia Research Center for Advanced Materials Science (RCAMS) King Khalid University Abha 61421 Saudi Arabia. Post-Graduation Program in Conservation of Cerrado Natural Resources Goiano Federal Institute Urutaí GO Brazil Post-Graduation Program in Ecology Conservation and Biodiversity Federal University of Uberlˆandia Uberlˆandia MG Brazil Post-Graduation Program in Biotechnology and Biodiversity Federal University of Goi'as Goîania GO Brazil.

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Integrating Chinese Herbal Medicine into Conventional Care Was Related to Lower Risk of Sarcopenia Among Rheumatid Arthritis Patients: A Retrospective, Population-Based Study

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Journal of Multidisciplinary Healthcare 2023年 16卷 3117-3127页

作者： Li, Hsin-Hua Livneh, Hanoch Huang, Hua-Lung Wang, Yu-Han Lu, Ming-Chi Chen, Wei-Jen Tsai, Tzung-Yi Department of Chinese Medicine Dalin Tzu Chi Hospital The Buddhist Tzu Chi Medical Foundation Chiayi 62247 Taiwan Rehabilitation Counseling Program Portland State University Portland 97207-0751 OR United States Department of Rehabilitation Dalin Tzu Chi Hospital The Buddhist Tzu Chi Medical Foundation Chiayi Taiwan Center of Sports Medicine Dalin Tzu Chi Hospital The Buddhist Tzu Chi Medical Foundation Chiayi 62247 Taiwan Division of Allergy Immunology and Rheumatology Dalin Tzu Chi Hospital The Buddhist Tzu Chi Medical Foundation Chiayi 62247 Taiwan School of Medicine Tzu Chi University Hualien 97004 Taiwan School of Post-Baccalaureate Chinese Medicine Tzu Chi University Hualien 97004 Taiwan Graduate Institute of Sports Science National Taiwan Sport University Taoyuan 33301 Taiwan Department of Medical Research Dalin Tzu Chi Hospital The Buddhist Tzu Chi Medical Foundation Chiayi 62247 Taiwan Department of Nursing Tzu Chi University of Science and Technology Hualien 97004 Taiwan Department of Environmental and Occupational Health College of Medicine National Cheng Kung University Tainan 70428 Taiwan

Objective: Sarcopenia is a frequently observed comorbidity of rheumatoid arthritis (RA) due to the chronic activation of the innate immune system. Accumulating evidence has indicated that Chinese herbal medicine (CHM) safely suppresses proinflammatory pathways and controls inflammation-associated disease, but its effect in reducing the risk of developing sarcopenia among RA subjects has not been established. We conducted a population-level cohort study to compare the sarcopenia risk in patients with RA who use or do not use CHM. Methods: Using claims from a nationwide insurance database, we recruited patients with newly diagnosed RA and without sarcopenia between 2002 and 2010. Propensity score matching was applied to randomly select sets of CHM users and non-CHM users to compare the sarcopenia risk until the end of 2013. The risk of new-onset sarcopenia was assessed using the Cox proportional hazards model. Results: As compared to non-CHM users, those receiving CHM treatment had a lower incidence of sarcopenia (7.69 vs 9.83 per 1000 person-years). CHM was correlated with a decreased chance of sarcopenia after controlling for potential covariates. Notably, use of CHM for more than two years may diminish the risk of getting sarcopenia by about 47% when taken as prescribed. Prescriptions of several herbal formulae may benefit the reduction of sarcopenia risk, such as Yan-Hu-Suo, Bei-Mu, Da-Huang, Huang Qin, Ping-Wei-San (PWS), Shu-Jing-Huo-Xue-Tang (SJHXT) and Chuan-Xiong-Cha-Tiao-San (CXCTS). Conclusion: This study produced new evidence as it is the first to show that the longer duration of CHM use was correlated to reduced risk of sarcopenia in a dose-dependent manner, implying that CHM treatment could be embraced as a routine care strategy for preventing sarcopenia. © 2023 Li et al.

关键词： Chinese herbal medicine cohort study rheumatoid arthritis sarcopenia

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Tailoring structural and magnetic properties of NiCu nanowires by electrodeposition

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Nano-Structures and Nano-Objects 2024年 39卷

作者： Castro-Lopes, S. Oliveira, D.M. Abrão, J.E. Assis, L.K.C.S. Silva, J.F.O. Neves-Araújo, J. Soares, J.M. Rodrigues, A.R. Padrón-Hernández, E. Federal Institute of Education Science and Technology of Pará (IFPA) PA Altamira 68371-441 Brazil Materials Science Post-Graduate Program Center of Exact and Natural Sciences Federal University of Pernambuco PE Recife 50740-540 Brazil Department of Physics Federal University of Pernambuco PE Recife 50740-540 Brazil University of Pernambuco Polytechnic School of Pernambuco (POLI) PE Recife 50720-001 Brazil NANOlab Center of Excellence Department of Physics University of Antwerp Groenenborgerlaan 171 Antwerp B-2020 Belgium Department of Physics State University of Rio Grande do Norte RN Mossoró 59610-190 Brazil

In this work, we investigated the tailoring of structural and magnetic properties of NiCu nanowires through electrodeposition. Continuous (S1) and composition-modulated (S2) wires were fabricated by electrodeposition using porous alumina membranes as a template. Morphological characterization revealed that the total length of the wires was 8 ± 3 µm in both S1 and S2. For the composition-modulated wires, the length of the segments with the lowest and highest Cu concentrations was 1.2 ± 0.4 µm and 226 ± 65 nm, respectively. Mapping by energy dispersive spectroscopy (EDS) revealed that the concentration of copper and nickel varied along the length of the composition-modulated nanowires, while the continuous nanowires contained a relatively constant concentration of both metals. It is demonstrated that the change in Cu concentration along the wire modifies the lattice parameter, average crystallite size (D) and lattice strain (ε) of Ni. This result is pivotal for understanding the magnetic properties of the wires, as nickel is primarily responsible for the magnetic behavior of the wires. From the ferromagnetic resonance (FMR) results, the linewidth and resonance field values for samples S1 and S2 were determined. It was demonstrated that the greater deformation in the nickel lattice in NiCu nanowires increases the angular dependence of the resonance field. Furthermore, the smaller nickel crystallite size was shown to increase spin dispersion and magnetic damping, leading to complex behavior in FMR responses. Finally, it was demonstrated how Cu can influence the magnetic properties such as coercivity (H_C) and squareness (M_R/M_S) of the wires. Overall, this work contributes to understanding the tailoring of structural and magnetic properties of NiCu nanowires through electrodeposition. © 2024 Elsevier B.V.

关键词： Electrodeposition Magnetic properties Nanowires

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Disasters and biodiversity: Case study on the endangered endemic marine ornamental Banggai cardinalfish 1

Disasters and biodiversity: Case study on the endangered end...

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1st MarSave International Symposium 2018: Strengthening marine Resilience for Sustainable Development Goals

作者： Moore, A.M. Ndobe, S. Yasir, I. Jompa, J. Faculty of Marine Science and Fisheries Hasanuddin University Indonesia Aquaculture Study Program Faculty of Animal Husbandry and Fisheries Tadulako University Indonesia Marine Science Department Faculty of Marine Science and Fisheries Hasanuddin University Indonesia Post-Graduate School Hasanuddin University Indonesia Marine Resilience and Sustainable Development Centre of Excellence Faculty of Marine Science and Fisheries Hasanuddin University Indonesia

Disasters are notoriously unpredictable;they can strike anytime, anywhere. However, in this Anthropocene Epoch, humanity has increased the likelihood of many disasters, as well as their likely severity and socio-ecological impacts, with implications for the future of natural resources;in particular, marine ecosystems and biodiversity, and the human communities who rely on them. This case study focussed on the Banggai cardinalfish (Pterapogon kauderni), a unique species of global conservation concern, and its native habitat in the Banggai Archipelago, at the centre of the Coral Triangle (CT) global marine biodiversity hotspot. To evaluate future risks and implications, we looked back to the past, including an overview of what is known regarding the origins and evolution of this species and its habitat, as well as past natural disasters in the Banggai Archipelago, Central Sulawesi, Indonesia. We then reviewed current status and trends affecting the likelihood of exposure and the vulnerability of endemic P. kauderni populations and habitat, overall and at the evolutionary significant unit (ESU) scale, to disasters caused by tectonic phenomena, disasters related to weather and anthropogenic climate change (e.g. mass coral bleaching, sea level rise), and the synergies between disaster impacts and localised human activities. Finally, we considered management options with potential for mitigating disaster risk and increasing resilience, with benefits for both biodiversity and human welfare, as well as avenues for future research. We conclude that local action can buy time, but it is likely that the eventual fate of this "flagship" species, as well as the human communities of this equatorial archipelago, depend on effective global action to curb the drivers of anthropogenic climate change. © 2019 Published under licence by IOP Publishing Ltd.

关键词： Disasters

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Correction to: A mini‑review on plasticrusts: occurrence, current trends, potential threats, and recommendations for coastal sustainability

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Environmental monitoring and assessment 2024年第7期196卷 629页

作者： Minh-Ky Nguyen Md Refat Jahan Rakib Hoang-Lam Nguyen Chitsan Lin Guilherme Malafaia Abubakr M Idris Faculty of Environment and Natural Resources Nong Lam University of Ho Chi Minh City Hamlet 6 Linh Trung Ward Thu Duc City Ho Chi Minh City 700000 Vietnam. Ph.D. Program in Maritime Science and Technology National Kaohsiung University of Science and Technology Kaohsiung 81157 Taiwan. Department of Fisheries and Marine Science Faculty of Science Noakhali Science and Technology University Sonapur Noakhali 3814 Bangladesh. Department of Civil Engineering McGill University Montreal Canada. Ph.D. Program in Maritime Science and Technology National Kaohsiung University of Science and Technology Kaohsiung 81157 Taiwan. ctlin@nkust.edu.tw. Department of Marine Environmental Engineering National Kaohsiung University of Science and Technology Kaohsiung 81157 Taiwan. ctlin@nkust.edu.tw. Post‑Graduation Program in Ecology Conservation and Biodiversity Federal University of Uberlandia Uberlandia MG Brazil. guilhermeifgoiano@***. Post‑Graduation Program in Biotechnology and Biodiversity Federal University of Goias Goiania GO Brazil. guilhermeifgoiano@***. Post‑Graduation Program in Conservation of Cerrado Natural Resources Goiano Federal Institute Urutai GO Brazil. guilhermeifgoiano@***. Department of Chemistry College of Science King Khalid University 62529 Abha Saudi Arabia. Research Center for Advanced Materials Science (RCAMS) King Khalid University 62529 Abha Saudi Arabia.

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Decision Support Systems Selection of Soang Superior Brood Using Weighted Product (WP) and Simple Additive Weighting (SAW) Method 4

Decision Support Systems Selection of Soang Superior Brood U...

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4th International Conference on Energy, Environment, Epidemiology and Information System, ICENIS 2019

作者： Ramadiani Kurniawan, Reynaldi Kridalaksana, Awang Harsa Jundillah, Muhammad Labib Faculty of Computer Science and Information Technology Mulawarman University Samarinda Indonesia Magister Program of Information System School of Post Graduate Studies Diponegoro University Semarang Indonesia

Gurame Soang Latin name Osphronomus Labirynthici gouramy including fish, that as the fish have gills and breathing apparatus in the form of additional gills (Labyrinth). One important factor in fish farming Soang Gurame is holding elections. Superior brood has characteristics identical, to distinguish it needs to experience since it is quite difficult. Some of the assessment factors in selecting a superior brood that could be considered in the cultivation of the fish farmers Gurame Soang as ideal weight, physical disability, movement of fish, the shape of the head, and the body color. All of these factors combined to get an assessment that could help the decision making process fish Gurame Soang superior sires. This study used two methods that have selected the calculation accuracy of the decision-making process. The method used is the Weighted Product and Simple Additive weighting. The results of the research that has been done, it can be concluded the total number of alternative Gurame Soang superior sires data as many as 10 fish, and obtained the results of testing the level of accuracy by using the results of data from a breeder Gurame Soang superior sires, Method of Weighted Product got an accuracy of 80% and methods Simple Additive weighting got an accuracy of 60%. © The Authors, published by EDP sciences, 2019.

关键词： Fish

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An efficient multi-objective evolutionary approach for solving the operation of multi-reservoir system scheduling in hydro-power plants

arXiv

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arXiv 2021年

作者： Marcelino, Carolina Gil Leite, G.M.C. Delgado, C.A.D.M. De Oliveira, L.B. Wanner, E.F. Jiménez-Fernández, S. Salcedo-Sanz, S. Department of Signal Processing and Communications Universidad de Alcalá Spain Institute of Computing Federal University of Rio de Janeiro Brazil Post-Graduate Program in Systems Engineering and Computer Science Federal University of Rio de Janeiro Brazil Computing Department Federal Center of Technology Education of Minas Gerais Brazil

This paper tackles the short-term hydro-power unit commitment problem in a multi-reservoir system - a cascade-based operation scenario. For this, we propose a new mathematical modelling in which the goal is to maximize the total energy production of the hydro-power plant in a sub-daily operation, and, simultaneously, to maximize the total water content (volume) of reservoirs. For solving the problem, we discuss the Multi-objective Evolutionary Swarm Hybridization (MESH) algorithm, a recently proposed multiobjective swarm intelligence-based optimization method which has obtained very competitive results when compared to existing evolutionary algorithms in specific applications. The MESH approach has been applied to find the optimal water discharge and the power produced at the maximum reservoir volume for all possible combinations of turbines in a hydro-power plant. The performance of MESH has been compared with that of well-known evolutionary approaches such as NSGA-II, NSGA-III, SPEA2, and MOEA/D in a realistic problem considering data from a hydro-power energy system with two cascaded hydro-power plants in Brazil. Results indicate that MESH showed a superior performance than alternative multi-objective approaches in terms of efficiency and accuracy, providing a profit of $412,500 per month in a projection analysis carried out. © 2021, CC BY-NC-ND.

关键词： Multiobjective optimization

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