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检索条件"机构=Program for Computational Biology and Bioinformatics"
532 条 记 录,以下是131-140 订阅
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Hyperbolic Diffusion Procrustes Analysis for Intrinsic Representation of Hierarchical Data Sets
Hyperbolic Diffusion Procrustes Analysis for Intrinsic Repre...
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International Conference on Acoustics, Speech, and Signal Processing (ICASSP)
作者: Ya-Wei Eileen Lin Yuval Kluger Ronen Talmon Viterbi Faculty of Electrical and Computer Engineering Technion Interdepartmental Program in Computational Biology and Bioinformatics Yale University Applied Math Program Yale University Department of Pathology School of Medicine Yale University
In this paper, we present Hyperbolic Diffusion Procrustes Analysis (HDPA), a new method for informative representation of hierarchical datasets based on hyperbolic geometry, diffusion geometry, and Procrustes analysis...
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Association between response to brief trastuzumab exposure in cell lines and early stage HER2+ breast tumors  11
Association between response to brief trastuzumab exposure i...
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2011 ACM Conference on bioinformatics, computational biology and Biomedicine, ACM-BCB 2011
作者: Sprecher, Emmett Sarkar, Sudipa Kleinstein, Steven H. Narayan, Murli Winer, Eric Tuck, David Lezon-Geyda, Kimberly Krop, Ian Harris, Lyndsay Department of Pathology Pathology Informatics United States Interdepartmental Program in Computational Biology and Bioinformatics United States Medical Oncology Yale Cancer Center United States School of Medicine Yale University New Haven CT United States Department of Medical Oncology Dana-Farber Cancer Institute Boston MA United States
Human epidermal growth factor receptor 2 amplified (HER2+) breast cancer is common and aggressive. Trastuzumab is a targeted therapy to the HER2 cell surface receptor and has greatly improved prognosis for HER2+ breas... 详细信息
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A Study of Classification Techniques Based on Spike Protein Sequences of MERS-CoV  23
A Study of Classification Techniques Based on Spike Protein ...
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Proceedings of the 2023 10th International Conference on Biomedical and bioinformatics Engineering
作者: Hayeon Kim Myeongji Cho Hyeon S. Son Laboratory of Computational Biology & Bioinformatics Graduate School of Public Health Seoul National University Republic of Korea and Institute of Health and Environment Seoul National University Republic of Korea Laboratory of Computational Biology & Bioinformatics Graduate School of Public Health Seoul National University Republic of Korea Laboratory of Computational Biology & Bioinformatics Graduate School of Public Health Seoul National University Republic of Korea Institute of Health and Environment Seoul National University Republic of Korea and Interdisciplinary Graduate Program in Bioinformatics College of Natural Science Seoul National University Republic of Korea
MERS-CoV, which belongs to the beta-coronaviruses together with SARS-CoV-2, although it has received relatively less attention by the COVID-19 pandemic, there is a sufficient possibility of new MERS-CoV lineages and v... 详细信息
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Crystallization of asymmetric patchy models for globular proteins in solution
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Physical Review E 2013年 第1期88卷 012721-012721页
作者: Diana Fusco Patrick Charbonneau Program in Computational Biology and Bioinformatics Duke University Durham North Carolina 27708 USA Department of Chemistry Duke University Durham North Carolina 27708 USA Department of Physics Duke University Durham North Carolina 27708 USA
Asymmetric patchy particle models have recently been shown to describe the crystallization of small globular proteins with near-quantitative accuracy. Here, we investigate how asymmetry in patch geometry and bond ener... 详细信息
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Ribosomes guide pachytene piRNA formation on long intergenic piRNA precursors (vol 22, pg 200, 2020)
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NATURE CELL biology 2020年 第3期22卷 353-353页
作者: Sun, Yu H. Zhu, Jiang Xie, Li Huitong Li, Ziwei Meduri, Rajyalakshmi Zhu, Xiaopeng Song, Chi Chen, Chen Ricci, Emiliano P. Weng, Zhiping Li, Xin Zhiguo Center for RNA Biology: From Genome to Therapeutics Department of Biochemistry and Biophysics University of Rochester Medical Center Rochester NY USA Computational Biology Department Carnegie Mellon University Pittsburgh PA USA College of Public Health Division of Biostatistics The Ohio State University Columbus OH USA Department of Animal Science Michigan State University East Lansing MI USA Université de Lyon ENSL UCBL INSERM CNRS LBMC Lyon France Program in Bioinformatics and Integrative Biology University of Massachusetts Medical School Worcester MA USA Department of Urology University of Rochester Medical Center Rochester NY USA
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex
Cell Genomics
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Cell Genomics 2025年 100879页
作者: Nelson J. Johansen Niklas Kempynck Nathan R. Zemke Saroja Somasundaram Seppe De Winter Marcus Hooper Deepanjali Dwivedi Ruchi Lohia Fabien Wehbe Bocheng Li Darina Abaffyová Ethan J. Armand Julie De Man Eren Can Ekşi Nikolai Hecker Gert Hulselmans Vasilis Konstantakos David Mauduit John K. Mich Gabriele Partel Trygve E. Bakken Allen Institute for Brain Science Seattle WA 98109 USA VIB Center for AI & Computational Biology VIB-KU Leuven Center for Brain and Disease Research & KU Leuven Department of Human Genetics Leuven Belgium Center for Epigenomics Department of Cellular and Molecular Medicine University of California San Diego La Jolla CA 92093 USA Physiology Department and Donnelly Centre for Cellular and Biomolecular Research University of Toronto Toronto ON Canada Maisonneuve-Rosemont Hospital Research Centre University of Montreal Montreal QC Canada School of Life Sciences Westlake University Hangzhou Zhejiang China Bioinformatics and Systems Biology Program University of California San Diego La Jolla CA 92093 USA
Identifying cell-type-specific enhancers is critical for developing genetic tools to study the mammalian brain. We organized the “Brain Initiative Cell Census Network (BICCN) Challenge: Predicting Functional Cell Typ... 详细信息
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Heterogeneous photocatalytic degradation of diuron on zinc oxide: Influence of surface-dependent adsorption on kinetics,degradation pathway,and toxicity of intermediates
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Journal of Environmental Sciences 2019年 第10期31卷 97-111页
作者: Sutaporn Meephon Thanyada Rungrotmongkol Somchintana Puttamat Supareak Praserthdam Varong Pavarajarn Center of Excellence in Particle Technology Department of Chemical Engineering Faculty of Engineering Chulalongkorn University Bangkok 10330 Thailand Biocatalyst and Environmental Biotechnology Research Unit Department of Biochemistry Faculty of Science Chulalongkorn UniversityBangkok 10330 Thailand Bioinformatics and Computational Biology Program Graduated School Chulalongkorn University Bangkok 10330 Thailand Department of Chemistry Faculty of Science Thammasat University Pathumthani 12120 Thailand Center of Excellence on Catalysis and Catalytic Reaction Engineering Department of Chemical Engineering Faculty of EngineeringChulalongkorn University Bangkok 10330 Thailand Research Program in Hazardous Substance Management in Agricultural Industry Center of Excellence on Hazardous Substance Management(HSM) Bangkok 10330 Thailand
Heterogeneous photocatalytic reaction has been generally applied for degradation of toxic *** of a compound using the same kind of catalyst that was synthesized differently are commonly found in ***,the reported degra... 详细信息
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Data-driven modeling and prediction of microglial cell dynamics in the ischemic penumbra
arXiv
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arXiv 2024年
作者: Amato, Sara Arnold, Andrea Bioinformatics & Computational Biology Program Worcester Polytechnic Institute WorcesterMA United States Department of Mathematical Sciences Worcester Polytechnic Institute WorcesterMA United States
Neuroinflammation immediately follows the onset of ischemic stroke. During this process, microglial cells are activated in and recruited to the tissue surrounding the irreversibly injured infarct core, referred to as ... 详细信息
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Identifying interaction sites in "Recalcitrant" proteins: Predicted protein and RNA binding sites in REV proteins of HIV-1 and EIAV agree with experimental data
Identifying interaction sites in "Recalcitrant" proteins: Pr...
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11th Pacific Symposium on Biocomputing 2006, PSB 2006
作者: Terribllini, Michael Lee, Jae-Hyung Yan, Changhui Jernigan, Robert L. Carpenter, Susan Honavar, Vasant Dobbs, Drena Bioinformatics and Computational Biology Graduate Program LH. Baker Center for Bioinformatics and Biological Statistics Iowa State University Ames IA 50010 United States Department of Computer Science Iowa State University Ames IA 50010 United States Department of Biochemistry Biophysics and Molecular Biology Iowa State University Ames IA 50010 United States Department of Genetics Development and Cell Biology Iowa State University Ames IA 50010 United States Artificial Intelligence Research Laboratory Center for Computational Intelligence Learning and Discovery Iowa State University Ames IA 50010 United States Department of Veterinary Microbiology and Pathology Washington State University Pullman WA. 99164 United States
Protein-protein and protein nucleic acid interactions are vitally important for a wide range of biological processes, including regulation or gene expression, protein synthesis, and replication and assembly of many vi... 详细信息
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Scalable algorithms for learning high-dimensional linear mixed models
arXiv
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arXiv 2018年
作者: Tan, Zilong Roche, Kimberly Zhou, Xiang Mukherjee, Sayan Department of Computer Science Duke University Program in Computational Biology & Bioinformatics Duke University Department of Biostatistics Center for Statistical Genetics University of Michigan Departments of Statistical Science Mathematics Computer Science Biostatistics & Bioinformatics Duke University
Linear mixed models (LMMs) are used extensively to model dependecies of observations in linear regression and are used extensively in many application areas. Parameter estimation for LMMs can be computationally prohib... 详细信息
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