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检索条件"机构=Program for Computational Biology and Bioinformatics"
526 条 记 录,以下是181-190 订阅
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Neutral Theory and the Somatic Evolution of Cancer (vol 35, pg 1308, 2018)
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MOLECULAR biology AND EVOLUTION 2018年 第6期35卷 1561-1561页
作者: Cannataro, Vincent L. Townsend, Jeffrey P. Department of Biostatistics Yale University New Haven CT Department of Biostatistics Yale University New Haven CT Program in Computational Biology and Bioinformatics Department of Ecology and Evolutionary Biology Yale University New Haven CT Corresponding author: E-mail: jeffrey.townsend@yale.edu. Associate editor
Kimura’s neutral theory argued that positive selection was not responsible for an appreciable fraction of molecular substitutions. Correspondingly, quantitative analysis reveals that the vast majority of substitution... 详细信息
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Bayesian multinomial logistic normal models through marginally latent matrix-T processes
arXiv
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arXiv 2019年
作者: Silverman, Justin D. Roche, Kimberly Holmes, Zachary C. David, Lawrence A. Mukherjee, Sayan Program in Computational Biology and Bioinformatics Duke University DurhamNC27708 United States Medical Scientist Training Program Duke University DurhamNC27708 United States Departments of Statistical Science Mathematics Computer Science Biostatistics & Bioinformatics Duke University DurhamNC27708 United States Center for Genomic and Computational Biology Duke University DurhamNC27708 United States Department of Molecular Genetics and Microbiology Duke University DurhamNC27708 United States
Bayesian multinomial logistic-normal (MLN) models are popular for the analysis of sequence count data (e.g., microbiome or gene expression data) due to their ability to model multivariate count data with complex covar... 详细信息
来源: 评论
SeqScreen: a biocuration platform for robust taxonomic and biological process characterization of nucleic acid sequences of interest
SeqScreen: a biocuration platform for robust taxonomic and b...
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IEEE International Conference on bioinformatics and Biomedicine
作者: Dreycey Albin Dan Nasko R. A. Leo Elworth Jacob Lu Advait Balaji Christian Diaz Nidhi Shah Jeremy Selengut Chris Hulme-Lowe Pravin Muthu Gene Godbold Mikael Lindvall Madeline Diep Adam Porter Mihai Pop Krista Ternus Todd J. Treangen Program in Systems Synthetic and Physical Biology Rice University Center for Bioinformatics and Computational Biology University of Maryland Department of Computer Science Rice University Signature Science LLC Fraunhofer Center for Experimental Software Engineering Department of Computer Science University of Maryland
Rapid advancements in synthetic biology and nucleic acid synthesis, in particular concerns about its intentional or accidental misuse, call for more sophisticated screening tools to identify genes of interest within s... 详细信息
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Essential metadata for 3D BRAIN microscopy
arXiv
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arXiv 2021年
作者: Ropelewski, Alexander J. Rizzo, Megan A. Swedlow, Jason R. Huisken, Jan Osten, Pavel Khanjani, Neda Weiss, Kurt Bakalov, Vesselina Engle, Michelle Gridley, Lauren Krzyzanowski, Michelle Madden, Tom Maiese, Deborah Waterfield, Justin Williams, David Hamilton, Carol Huggins, Wayne Biomedical Applications Group Pittsburgh Supercomputing Center 300 S Craig Street PittsburghPA15213 United States Department of Physiology University of Maryland School of Medicine 660 West Redwood Street BaltimoreMD21201 United States Centre for Gene Regulation & Expression Division of Computational Biology University of Dundee Nethergate DundeeDD1 4HN United Kingdom Morgridge Institute for Research 330 N Orchard Street MadisonWI53715 United States Cold Spring Harbor Laboratory One Bungtown Road Cold Spring HarborNY11724 United States Mark and Mary Stevens Neuroimaging and Informatics Institute Laboratory of Neuro Imaging Keck School of Medicine of University of Southern California 1975 Zonal Avenue Los AngelesCA90033 United States Bioinformatics and Computational Biology Program RTI International 3040 East Cornwallis Road Research Triangle ParkNC27709 United States
Recent advances in fluorescence microscopy techniques and tissue clearing, labeling, and staining provide unprecedented opportunities to investigate brain structure and function. These experiments’ images make it pos... 详细信息
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Author Correction: Senotherapeutic peptide treatment reduces biological age and senescence burden in human skin models
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npj aging 2024年 第1期10卷 14页
作者: Alessandra Zonari Lear E Brace Kallie Al-Katib William F Porto Daniel Foyt Mylieneth Guiang Edgar Andres Ochoa Cruz Bailey Marshall Melissa Gentz Gabriela Rapozo Guimarães Octavio L Franco Carolina R Oliveira Mariana Boroni Juliana L Carvalho OneSkin Inc. San Francisco CA USA. alessandra@oneskin.co. OneSkin Inc. San Francisco CA USA. Genomic Sciences and Biotechnology Program Catholic University of Brasilia Brasília 70790-160 DF Brazil. Porto Reports Brasília 72236-011 DF Brazil. Bioinformatics and Computational Biology Lab Brazilian National Cancer Institute (INCA) Rio de Janeiro 20231-050 RJ Brazil. Centre of Proteomic Analyses and Biochemistry Genomic Sciences and Biotechnology Program Catholic University of Brasilia Brasilia 70790-160 DF Brazil. S-Inova Biotech Biotechnology Program Catholic University Dom Bosco Campo Grande 79117-010 MS Brazil. Molecular Pathology Program University of Brasilia Brasilia 70.910-900 DF Brazil. Interdisciplinary Biosciences Laboratory Faculty of Medicine University of Brasília Brasília 70.910-900 DF Brazil.
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Lymphatic endothelial mTORC1 instructs metabolic and developmental signaling during lymphangiogenesis
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Developmental Cell 2025年
作者: Han, Fei Simeroth, Summer Zhu, Jie Gryniuk, Irma Pranay, Atul Chen, Weiqing Wang, Yuan Cai, Yuanyuan Shen, Zhiyuan Wang, Guangyu Griffin, Courtney T. Xia, Lijun Yu, Pengchun Cardiovascular Biology Research Program Oklahoma Medical Research Foundation Oklahoma City 73104 OK United States Department of Cell Biology University of Oklahoma Health Sciences Center Oklahoma City 73104 OK United States Aging and Metabolism Research Program Oklahoma Medical Research Foundation Oklahoma City 73104 OK United States Center for Bioinformatics and Computational Biology Houston Methodist Research Institute Houston TX United States Department of Physiology Biophysics & Systems Biology Weill Cornell Graduate School of Medical Science Weill Cornell Medicine Cornell University New York NY United States Department of Radiation Oncology Rutgers Cancer Institute and Robert Wood Johnson Medical School Rutgers University New Brunswick NJ United States Center for Cardiovascular Regeneration Houston Methodist Research Institute Houston TX United States Center for RNA Therapeutics Houston Methodist Research Institute Houston TX United States Department of Cardiothoracic Surgery Weill Cornell Medicine Cornell University New York NY United States Department of Biochemistry and Physiology University of Oklahoma Health Sciences Center Oklahoma City OK United States
The lymphatic vasculature comprises lymphatic capillaries and collecting vessels. To support lymphatic development, lymphatic endothelial cells (LECs) utilize nutrients to fuel lymphangiogenic processes. Meanwhile, LE... 详细信息
来源: 评论
帕博利珠单抗治疗伴脑转移NSCLC患者的一项非随机、开放Ⅱ期试验的长期随访结果和生物标志物分析
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中国肺癌杂志 2021年 第9期24卷 I0007-I0016页
作者: Sarah B GOLDBERG Kurt A SCHALPER Scott N GETTINGER Amit MAHAJAN Roy S HERBST Anne C CHANG Rogerio LILENBAUM Frederick H WILSON Sacit Bulent OMAY James B YU Lucia JILAVEANU Thuy TRAN Kira PAVLIK Elin ROWEN Heather GERRSH Annette KOMLO Richa GUPTA Hailey WYATT Matthew RIBEIRO Yuval KLUGER Geyu ZHOU Wei WEI Veronica L CHANG Harriet M KLUGER 董晓荣(翻译/校对) Department of Medicine(Medical Oncology) Yale School of MedicineNew HavenCTUSA Department of Pathology Yale School of MedicineNew HavenCTUSA Department of Radiology Yale School of MedicineNew HavenCTUSA Department of Neurosurgery Yale School of MedicineNew HavenCTUSA Department of Therapeutic Radiology Yale School of MedicineNew HavenCTUSA Interdepartmental Program in Computational Biology and Bioinformatics Yale School of MedicineNew HavenCTUSA Department of Biostatistics Yale School of Public HealthNew HavenCTUSA 华中科技大学同济医学院附属协和医院胸部肿瘤科
背景与目的我们开展了一项帕博利珠单抗用于伴未治疗脑转移的非小细胞肺癌(non-small cell lung cancer,NSCLC)或黑色素瘤患者的疗效和安全性的II期试验,旨在评估程序性死亡受体1(programmed cell death 1,PD-1)抑制剂在中枢神经系统(ce... 详细信息
来源: 评论
Investigating the Efficacy of Data Mining Techniques for Crowdsourced Biological Datasets
Investigating the Efficacy of Data Mining Techniques for Cro...
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IEEE MIT Undergraduate Research Technology Conference (URTC)
作者: Ilona Regan Dany Alkurdi Sarun Paisarnsrisomsuk Carolina Ruiz Elizabeth F. Ryder Rob Gegear Bioinformatics and Computational Biology Program Worcester Polytechnic Institute Worcester MA USA Princeton University Princeton NJ USA Worcester Polytechnic Institute Worcester MA USA University of Massachusetts Dartmouth Dartmouth MA USA
The rapid worldwide decline of wild pollinators over recent years poses a significant environmental threat due to the critical keystone role that pollinators play in terrestrial ecosystems. In order to gain insight in... 详细信息
来源: 评论
Investigation of RNA-RNA Interactions Using the RISE Database
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Current Protocols in bioinformatics 2018年 第1期64卷 e58/1-e58/1页
作者: Ju, Yanyan Gong, Jing Yang, Yucheng T. Zhang, Qiangfeng Cliff MOE Key Laboratory of Bioinformatics Beijing Advanced Innovation Center for Structural Biology Center for Synthetic and Systems Biology Tsinghua-Peking Joint Center for Life Sciences School of Life Sciences Tsinghua University Beijing China Department of Molecular Biophysics and Biochemistry Yale University New Haven CT United States Program in Computational Biology and Bioinformatics Yale University New Haven CT United States
RNA-RNA interactions (RRIs) are essential to understanding the regulatory mechanisms of RNAs. Mapping RRIs in vivo in a transcriptome-wide manner remained challenging until the recent development of several sequencing... 详细信息
来源: 评论
Cell2Sentence: teaching large language models the language of biology  24
Cell2Sentence: teaching large language models the language o...
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Proceedings of the 41st International Conference on Machine Learning
作者: Daniel Levine Syed Asad Rizvi Sacha Lévy Nazreen Pallikkavaliyaveetil David Zhang Xingyu Chen Sina Ghadermarzi Ruiming Wu Zihe Zheng Ivan Vrkic Anna Zhong Daphne Raskin Insu Han Antonio Henrique De Oliveira Fonseca Josue Ortega Caro Amin Karbasi Rahul M. Dhodapkar David Van Dijk Department of Computer Science Yale University New Haven CT School of Engineering Applied Science University of Pennsylvania Philadelphia PA School of Computer and Communication Sciences Swiss Federal Institute of Technology Lausanne Lausanne Switzerland Department of Computer Science Yale University New Haven CT and Department of Neuroscience Yale School of Medicine New Haven CT Department of Computer Science Yale University New Haven CT and Department of Neuroscience Yale School of Medicine New Haven CT and Wu Tsai Institute Yale University New Haven CT Google and Yale Institute for Foundations of Data Science New Haven CT and Department of Computer Science Yale University New Haven CT and Yale School of Engineering and Applied Science New Haven CT Roski Eye Institute University of Southern California Los Angeles CA and Department of Internal Medicine (Cardiology) Yale School of Medicine New Haven CT Department of Computer Science Yale University New Haven CT and Yale Institute for Foundations of Data Science New Haven CT and Wu Tsai Institute Yale University New Haven CT and Cardiovascular Research Center Yale School of Medicine New Haven CT and Interdepartmental Program in Computational Biology & Bioinformatics Yale University New Haven CT and Department of Internal Medicine (Cardiology) Yale School of Medicine New Haven CT
We introduce Cell2Sentence (C2S), a novel method to directly adapt large language models to a biological context, specifically single-cell transcriptomics. By transforming gene expression data into "cell sentence...
来源: 评论