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检索条件"机构=Program in Applied Mathematics and Computational Science"
451 条 记 录,以下是321-330 订阅
排序:
ReLSO: A Transformer-based Model for Latent Space Optimization and Generation of Proteins
arXiv
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arXiv 2022年
作者: Castro, Egbert Godavarthi, Abhinav Rubinfien, Julian Givechian, Kevin Bhaskar, Dhananjay Krishnaswamy, Smita Computational Biology and Bioinformatics Program Yale University New HavenCT06511 United States Department of Applied Mathematics Yale University New HavenCT06511 United States Department of Genetics Yale University New HavenCT06511 United States Department of Computer Science Yale University New HavenCT06511 United States
The development of powerful natural language models have increased the ability to learn meaningful representations of protein sequences. In addition, advances in high-throughput mutagenesis, directed evolution, and ne... 详细信息
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Hybrid Auxiliary Field Quantum Monte Carlo for Molecular Systems
arXiv
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arXiv 2022年
作者: Chen, Yixiao Zhang, Linfeng Weinan, E. Car, Roberto Program in Applied and Computational Mathematics Princeton University PrincetonNJ08544 United States AI for Science Institute Beijing100080 China DP Technology Beijing100080 China Center for Machine Learning Research School of Mathematical Sciences Peking University Beijing100084 China Department of Chemistry Department of Physics Princeton Institute for the Science and Technology of Materials Princeton University PrincetonNJ08544 United States
We propose a quantum Monte Carlo approach to solve the many-body Schrödinger equation for the electronic ground state. The method combines optimization from variational Monte Carlo and propagation from auxiliary ... 详细信息
来源: 评论
Inverse design of disordered stealthy hyperuniform spin chains
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Physical Review B 2016年 第6期93卷 064201-064201页
作者: Eli Chertkov Robert A. DiStasio, Jr. Ge Zhang Roberto Car Salvatore Torquato Department of Physics Princeton University Princeton New Jersey 08544 USA Department of Chemistry Princeton University Princeton New Jersey 08544 USA Department of Chemistry and Chemical Biology Cornell University Ithaca New York 14853 USA Princeton Institute for the Science and Technology of Materials Princeton University Princeton New Jersey 08544 USA Program in Applied and Computational Mathematics Princeton University Princeton New Jersey 08544 USA
Positioned between crystalline solids and liquids, disordered many-particle systems which are stealthy and hyperuniform represent new states of matter that are endowed with novel physical and thermodynamic properties.... 详细信息
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Cross-system biological image quality enhancement based on the generative adversarial network as a foundation for establishing a multi-institute microscopy cooperative network
arXiv
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arXiv 2024年
作者: Panek, Dominik Rząca, Carina Szczypior, Maksymilian Sorysz, Joanna Misztal, Krzysztof Baster, Zbigniew Rajfur, Zenon Doctoral School of Exact and Natural Sciences Jagiellonian University ul. Lojasiewicza 11 Kraków30-348 Poland Department of Molecular and Interfacial Biophysics Faculty of Physics Astronomy and Applied Computer Science Jagiellonian University ul. Lojasiewicza 11 Kraków30‑348 Poland Undergraduate Program in Biophysics Faculty of Physics Astronomy and Applied Computer Science Jagiellonian University ul. Lojasiewicza 11 Kraków30‑348 Poland Undergraduate program in Biomedical Engineering Faculty of Electrical Engineering Automatics Computer Science and Biomedical Engineering AGH University of Science and Technology Al. A. Mickiewicza 30 Building B-1 Kraków30-059 Poland Division of Computational Mathematics Faculty of Mathematics and Computer Science Jagiellonian University 6 Lojasiewicza St. Kraków Poland
High-quality fluorescence imaging of biological systems is limited by processes like photobleaching and phototoxicity, and also in many cases, by limited access to the latest generations of microscopes. Moreover, low ... 详细信息
来源: 评论
Manifestations of metastable criticality in the long-range structure of model water glasses
arXiv
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arXiv 2021年
作者: Gartner, Thomas E. Torquato, Salvatore Car, Roberto Debenedetti, Pablo G. Department of Chemistry Princeton University PrincetonNJ United States Department of Physics Princeton University PrincetonNJ United States Program in Applied and Computational Mathematics Princeton University PrincetonNJ United States Princeton Institute for the Science and Technology of Materials Princeton University PrincetonNJ United States Department of Chemical and Biological Engineering Princeton University PrincetonNJ United States
Much attention has been devoted to water’s metastable phase behavior, including polyamorphism (multiple amorphous solid phases), and the hypothesized liquid-liquid transition and associated critical point. However, t... 详细信息
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Bridging scales with Machine Learning: From first principles statistical mechanics to continuum phase field computations to study order-disorder transitions in LixCoO2
arXiv
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arXiv 2023年
作者: Teichert, G.H. Das, S. Shojaei, M. Faghih Holber, J. Mueller, T. Hung, L. Gavini, V. Garikipati, K. Department of Mechanical Engineering University of Michigan United States Toyota Research Institute Los AltosCA United States Department of Materials Science & Engineering University of Michigan United States Department of Mathematics University of Michigan United States Michigan Institute for Computational Discovery & Engineering University of Michigan United States Applied Physics Program University of Michigan United States Materials Science & Engineering Johns Hopkins University United States
LixTMO2 (TM=Ni, Co, Mn) forms an important family of cathode materials for Li-ion batteries, whose performance is strongly governed by Li composition-dependent crystal structure and phase stability. Here, we use LixCo... 详细信息
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Interactions leading to disordered ground states and unusual low-temperature behavior
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Physical Review E 2009年 第3期80卷 031105-031105页
作者: Robert D. Batten Frank H. Stillinger Salvatore Torquato Department of Chemical Engineering Princeton University Princeton New Jersey 08544 USA Department of Chemistry Princeton University Princeton New Jersey 08544 USA Princeton Materials Institute Princeton University Princeton New Jersey 08544 USA Program in Applied and Computational Mathematics Princeton University Princeton New Jersey 08544 USA Princeton Center for Theoretical Science Princeton University Princeton New Jersey 08544 USA School of Natural Sciences Institute for Advanced Study Princeton New Jersey 08544 USA
We have shown that any pair potential function v(r) possessing a Fourier transform V(k) that is positive and has compact support at some finite wave number K yields classical disordered ground states for a broad densi... 详细信息
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DIFFUSION CURVATURE FOR ESTIMATING LOCAL CURVATURE IN HIGH DIMENSIONAL DATA
arXiv
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arXiv 2022年
作者: Bhaskar, Dhananjay MacDonald, Kincaid Fasina, Oluwadamilola Thomas, Dawson Rieck, Bastian Adelstein, Ian Krishnaswamy, Smita Department of Genetics Yale School of Medicine New HavenCT United States Department of Mathematics Yale University New HavenCT United States Program for Applied Mathematics Yale University New HavenCT United States Department of Physics Yale University New HavenCT United States Institute of AI for Health Helmholtz Pioneer Campus Munich Germany Department of Computer Science Yale University New HavenCT United States Program for Computational Biology and Bioinformatics Yale University New HavenCT United States
We introduce a new intrinsic measure of local curvature on point-cloud data called diffusion curvature. Our measure uses the framework of diffusion maps, including the data diffusion operator, to structure point cloud... 详细信息
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Avian photoreceptor patterns represent a disordered hyperuniform solution to a multiscale packing problem
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Physical Review E 2014年 第2期89卷 022721-022721页
作者: Yang Jiao Timothy Lau Haralampos Hatzikirou Michael Meyer-Hermann Joseph C. Corbo Salvatore Torquato Princeton Institute of the Science and Technology of Materials Princeton University Princeton New Jersey 08540 USA Materials Science and Engineering Arizona State University Tempe Arizona 85287 USA Department of Pathology and Immunology Washington University School of Medicine St. Louis Missouri 63110 USA Department of Systems Immunology Helmholtz Centre for Infection Research Braunschweig Germany Center for Advancing Electronics Dresden TU Dresden 01062 Dresden Germany Department of Chemistry Department of Physics Program in Computational and Applied Mathematics Princeton University Princeton New Jersey 08544 USA
Optimal spatial sampling of light rigorously requires that identical photoreceptors be arranged in perfectly regular arrays in two dimensions. Examples of such perfect arrays in nature include the compound eyes of ins... 详细信息
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Exact constructions of a family of dense periodic packings of tetrahedra
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Physical Review E 2010年 第4期81卷 041310-041310页
作者: S. Torquato Y. Jiao Department of Chemistry Princeton University Princeton New Jersey 08544 USA Department of Physics Princeton University Princeton New Jersey 08544 USA Princeton Center for Theoretical Science Princeton University Princeton New Jersey 08544 USA Program in Applied and Computational Mathematics Princeton University Princeton New Jersey 08544 USA School of Natural Sciences Institute for Advanced Study Princeton New Jersey 08540 USA Department of Mechanical and Aerospace Engineering Princeton University Princeton New Jersey 08544 USA
The determination of the densest packings of regular tetrahedra (one of the five Platonic solids) is attracting great attention as evidenced by the rapid pace at which packing records are being broken and the fascinat... 详细信息
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