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检索条件"机构=Program in Bioinformatics and Mathematics"
194 条 记 录,以下是21-30 订阅
排序:
Aggregating Structural Features for Computational Analysis of Mutations in BRCT Domains of BRCA1 Protein
Aggregating Structural Features for Computational Analysis o...
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International Conference on Informatics, Multimedia, Cyber and Information System (ICIMCIS)
作者: Alam Ahmad Hidayat Rudi Nirwantono Mahmud Isnan Joko Pebrianto Trinugroho Bens Pardamean Mathematics Department School of Computer Science Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia Biotechnology Department Faculty of Engineering Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia Computer Science Department Bioinformatics and Data Science Research Center BINUS Graduate Program Jakarta Indonesia
Understanding the mechanistic interpretability of mutation effects in a protein can help predict the clinical implications of the genetic variants. Hence, computational variant effect predictions that involve protein ...
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A FLOW ARTIST FOR HIGH-DIMENSIONAL CELLULAR DATA
arXiv
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arXiv 2023年
作者: MacDonald, Kincaid Bhaskar, Dhananjay Thampakkul, Guy Nguyen, Nhi Zhang, Joia Perlmutter, Michael Adelstein, Ian Krishnaswamy, Smita Department of Mathematics Yale University United States Department of Genetics Yale School of Medicine United States Department of Computer Science Yale University United States Department of Mathematics Pomona College United States Applied Mathematics Program Yale University United States Department of Statistics University of Washington United States Department of Mathematics Boise State University United States Computational Biology and Bioinformatics Program Yale University United States
We consider the problem of embedding point cloud data sampled from an underlying manifold with an associated flow or velocity. Such data arises in many contexts where static snapshots of dynamic entities are measured,... 详细信息
来源: 评论
Utilizing Semi-supervised Method in Predicting BRCA1 Pathogenicity Variants
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Procedia Computer Science 2023年 227卷 36-45页
作者: Alam Ahmad Hidayat Joko Pebrianto Trinugroho Rudi Nirwantono Digdo Sudigyo Bens Pardamean Department of Mathematics School of Computer Science Bina Nusantara University Indonesia 11480 Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program Bina Nusantara University Jakarta Indonesia 11480
Quantifying the effect of mutations in the BRCA1 gene is useful for understanding their clinical consequences on breast cancer. Machine learning models can be applied to predict the landscape of protein variant effect... 详细信息
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Machine Learning Approach for Single Nucleotide Polymorphism Selection in Genetic Testing Results
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Procedia Computer Science 2023年 227卷 46-54页
作者: Joko Pebrianto Trinugroho Alam Ahmad Hidayat Mahmud Isnan Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta 11480 Indonesia Department of Mathematics School of Computer Science Bina Nusantara University Jakarta 11480 Indonesia Computer Science Department BINUS Graduate Program Bina Nusantara University Jakarta 11480 Indonesia
Lactose intolerance is a type of digestive problem that may threaten the population because milk and dairy products compose of nutrients that are essential for human body. Genetic tests possess a great potential to de... 详细信息
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Transductive and inductive outlier detection with robust autoencoders  24
Transductive and inductive outlier detection with robust aut...
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Proceedings of the Fortieth Conference on Uncertainty in Artificial Intelligence
作者: Ofir Lindenbaum Yariv Aizenbud Yuval Kluger Faculty of Engineering Bar-Ilan University Ramat Gan Israel School of Mathematical Sciences Tel Aviv University Tel Aviv Israel Program in Applied Mathematics Yale University New Haven CT and Department of Pathology Yale University School of Medicine New Haven CT and Computational Biology & Bioinformatics Program Yale University New Haven CT
Accurate detection of outliers is crucial for the success of numerous data analysis tasks. In this context, we propose the Probabilistic Robust AutoEncoder (PRAE) that can simultaneously remove outliers during trainin...
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An Exploratory Computational Approach for Elucidating a Nonstructural Protein Interaction in Dengue Virus 2
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Procedia Computer Science 2024年 245卷 470-479页
作者: Alam Ahmad Hidayat Rudi Nirwantono Bens Pardamean Mathematics Department School of Computer Science Bina Nusantara University Indonesia 11480 Biotechnology Department Faculty of Engineering Bina Nusantara University Indonesia 11480 Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program Bina Nusantara University Jakarta Indonesia 11480
As the dengue infection still impacts hundreds of millions of people globally, unprecedented efforts in dengue drug development have been more progressive in recent decades. Computational methods provide a fast, susta... 详细信息
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Multivariate Time-Series Deep Learning for Joint Prediction of Temperature and Relative Humidity in a Closed Space  8
Multivariate Time-Series Deep Learning for Joint Prediction ...
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8th International Conference on Computer Science and Computational Intelligence, ICCSCI 2023
作者: Gunawan, Fergianto E. Budiman, Arief S. Pardamean, Bens Juana, Endang Romeli, Sugiarto Cenggoro, Tjeng W. Purwandari, Kartika Hidayat, Alam A. Redi, Anak A.N.P. Asrol, Muhammad Industrial Engineering Department BINUS Graduate Program - Master of Industrial Engineering Bina Nusantara University Jakarta11480 Indonesia Computer Science Department BINUS Graduate Program - Master of Computer Science Program Bina Nusantara University Jakarta11480 Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia Electrical Engineering Department Faculty of Industrial Technology Universitas Trisakti Jakarta11440 Indonesia PT Impack Pratama Industri Jakarta14350 Indonesia Computer Science Department School of Computer Science Bina Nusantara University Jakarta11480 Indonesia Mathematics Department School of Computer Science Bina Nusantara University Jakarta11480 Indonesia
An accurate predictive model of temperature and humidity plays a vital role in many industrial processes that utilize a closed space such as in agriculture and building management. With the exceptional performance of ... 详细信息
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A bioinformatics Analysis and Homology 3D Modeling of Dihydroxy-orotate-dehydrogenase of Plasmodium ovale
A Bioinformatics Analysis and Homology 3D Modeling of Dihydr...
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International Conference on Informatics, Multimedia, Cyber and Information System (ICIMCIS)
作者: Rudi Nirwantono Khoirunnisa Assidqi Alam Ahmad Hidayat Joko Pebrianto Trinugroho Bens Pardamean Biotechnology Department Faculty of Engineering Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia Biotechnology Department Faculty of Engineering Food Biotechnology Research Center Bina Nusantara University Jakarta Indonesia Mathematics Departement School of Computer Science Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia Computer Science Department BINUS Graduate Program – Master of Computer Science Program Bina Nusantara University Jakarta Indonesia
The infection of Plasmodium vivax is relatively less virulent than the deathliest Plasmodium falciparum. However, it still can lead to a fatal case and often induces recurring malaria due to dormant parasites in the l...
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Bayesian Formulations for Graph Spectral Denoising
arXiv
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arXiv 2023年
作者: Leone, Sam Sun, Xingzhi Perlmutter, Michael Krishnaswamy, Smita Program for Applied Mathematics Yale University United States Department of Computer Science Yale University United States Department of Mathematics Boise State University United States Department of Genetics Yale School of Medicine United States Wu Tsai Institute Yale University United States FAIR Meta AI United States Computational Biology and Bioinformatics Program Yale University United States
Here we consider the problem of denoising features associated to complex data, modeled as signals on a graph, via a smoothness prior. This is motivated in part by settings such as single-cell RNA where the data is ver... 详细信息
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DIRECTED SCATTERING FOR KNOWLEDGE GRAPH-BASED CELLULAR SIGNALING ANALYSIS
arXiv
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arXiv 2023年
作者: Venkat, Aarthi Chew, Joyce Rodriguez, Ferran Cardoso Tape, Christopher J. Perlmutter, Michael Krishnaswamy, Smita Program for Computational Biology and Bioinformatics Yale University United States Department of Mathematics University of California Los Angeles United States Department of Oncology University College London Cancer Institute United Kingdom Department of Mathematics Boise State University United States Department of Genetics and Computer Science Yale University United States
Directed graphs are a natural model for many phenomena, in particular scientific knowledge graphs such as molecular interaction or chemical reaction networks that define cellular signaling relationships. In these situ... 详细信息
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