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检索条件"机构=Program in Bioinformatics and Systems Biology"
279 条 记 录,以下是171-180 订阅
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Proceedings of the 16th Annual UT-KBRIN bioinformatics Summit 2016: proceedings
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BMC Proceedings 2017年 第9期11卷 1-6页
作者: L. Leon Dent Sammed N. Mandape Siddharth Pratap Jianan Dong Jamaine Davis Jennifer A. Gaddy Kofi Amoah Steve Damo Dana R. Marshall Jacob Jones Toni Brandt Gilberto Diaz Qingguo Wang Todd Gary Ashwini Yenamandra Marina Z. Ghattas Marwa Elrakaiby Ramy K. Aziz Hamdallah H. Zedan Moamen Elmassry Marwa ElRakaiby Mariam Lotfy Jarrad Marcel Rania A. Khattab Maha M. Abdelfattah Jack A. Gilbert Pouya Dini Shavahn C. Loux Kirsten E. Scoggin Alejandro Esteller-Vico Edward L. Squires Mats H. T. Troedsson Barry A. Ball Peter Daels Kalpani De Silva Ernest Bailey Joel C. Stephens Theodore S. Kalbfleisch Christine E. Dolin Lauren G. Poole Gavin E. Arteel Michael L. Merchant Daniel W. Wilkey Michelle T. Barati Eric C. Rouchka Richard M. Higashi Teresa W-M Fan Hunter Moseley Andrew N Lane Department of Surgery Meharry Medical College Nashville TN 37208 USA Bioinformatics Core Meharry Medical College Nashville TN 37208 USA Department of Biochemistry and Cancer Biology Meharry Medical College Nashville TN 37208 USA Department of Medicine Vanderbilt University Medical Center Nashville TN 37232 USA Department of Life and Physical Sciences Fisk University Nashville TN 37208 USA Department of Pathology Anatomy and Cell Biology Meharry Medical College Nashville TN 37208 USA College of Computing and Technology Lipscomb University 1 University Park Drive Nashville TN 37204 USA Vanderbilt University Medical Center Nashville TN 37232 USA Office of Research Middle Tennessee State University 1301 East Main St Murfreesboro TN 37132 USA Department of Microbiology and Immunology Faculty of Pharmacy Cairo University Cairo Egypt Department of Biological Sciences Texas Tech University Lubbock TX 79409 USA Clinical Operations Department Ray-Clinical Research Organization Giza Egypt Genomic and Systems Biology Bioscience Division Argonne National Laboratory Argonne IL 60439 USA Research Institute of Ophthalmology Giza Egypt Department of Surgery University of Chicago Chicago IL 60637 USA Microbial Ecology Group Argonne National Laboratory Argonne IL 60439 USA Department of Veterinary Science University of Kentucky Lexington KY 40536 USA Department of Reproduction Faculty of Veterinary Medicine University of Gent Merelbeke Belgium Interdisciplinary Studies Program: Specialization in Bioinformatics University of Louisville Louisville KY 40292 USA Department of Veterinary Science University of Kentucky Lexington KY 40506 USA Genomics GPS Guilford CT 06437 USA Department of Biochemistry and Molecular Genetics School of Medicine University of Louisville Louisville KY 40292 USA Department of Pharmacology & Toxicology University of Louisville Louisville KY 40202 USA Department of Medicine University of Louisville
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White Paper on Enabling Global Image Data Sharing in the Life Sciences
arXiv
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arXiv 2024年
作者: Bajcsy, Peter Bhattiprolu, Sreenivas Börner, Katy Cimini, Beth A. Collinson, Lucy Ellenberg, Jan Fiolka, Reto Giger, Maryellen Goscinski, Wojtek Hartley, Matthew Hotaling, Nathan Horwitz, Rick Jug, Florian Kreshuk, Anna Lundberg, Emma Mathur, Aastha Narayan, Kedar Onami, Shuichi Plant, Anne L. Prior, Fred Swedlow, Jason Taylor, Adam Keppler, Antje National Institute of Standards and Technology GaithersburgMD20899 United States ZEISS Microscopy Customer Center DublinCA94568 United States Intelligent Systems Engineering Indiana University BloomingtonIN47408 United States Imaging Platform Broad Institute CambridgeMA United States Electron Microscopy Science Technology Platform Francis Crick Institute 1 Midland Road LondonNW1 1AT United Kingdom European Molecular Biology Laboratory Heidelberg Germany Lyda Hill Department of Bioinformatics UT Southwestern Medical Center DallasTX United States Department of Radiology and Committee on Medical Physics University of Chicago ChicagoIL United States National Imaging Facility Brisbane Australia European Molecular Biology Laboratory European Bioinformatics Institute Hinxton Cambridge United Kingdom National Center for Advancing Translational Science National Institutes of Health Rockville United States Allen Institute for Cell Science Seattle United States Fondazione Human Technopole Milan Italy Stanford University California US and SciLifeLab KTH Royal Institute of Technology Stockholm Sweden Center for Molecular Microscopy Center for Cancer Research National Cancer Institute National Institutes of Health BethesdaMD20892 United States Cancer Research Technology Program Frederick National Laboratory for Cancer Research FrederickMD21702 United States RIKEN Center for Biosystems Dynamics Research Kobe Japan Department of Biomedical Informatics Department of Radiology University of Arkansas for Medical Sciences Little RockAR72205 United States Divisions of Computational Biology and Molecular Cell and Developmental Biology University of Dundee United Kingdom Sage Bionetworks SeattleWA United States
Coordinated collaboration is essential to realize the added value of and infrastructure requirements for global image data sharing in the life sciences. In this White Paper, we take a first step at presenting some of ...
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Author Correction: π-HuB: the proteomic navigator of the human body
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Nature 2025年 第8046期637卷 E22页
作者: Fuchu He Ruedi Aebersold Mark S Baker Xiuwu Bian Xiaochen Bo Daniel W Chan Cheng Chang Luonan Chen Xiangmei Chen Yu-Ju Chen Heping Cheng Ben C Collins Fernando Corrales Jürgen Cox Weinan E Jennifer E Van Eyk Jia Fan Pouya Faridi Daniel Figeys George Fu Gao Wen Gao Zu-Hua Gao Keisuke Goda Wilson Wen Bin Goh Dongfeng Gu Changjiang Guo Tiannan Guo Yuezhong He Albert J R Heck Henning Hermjakob Tony Hunter Narayanan Gopalakrishna Iyer Ying Jiang Connie R Jimenez Lokesh Joshi Neil L Kelleher Ming Li Yang Li Qingsong Lin Cui Hua Liu Fan Liu Guang-Hui Liu Yansheng Liu Zhihua Liu Teck Yew Low Ben Lu Matthias Mann Anming Meng Robert L Moritz Edouard Nice Guang Ning Gilbert S Omenn Christopher M Overall Giuseppe Palmisano Yaojin Peng Charles Pineau Terence Chuen Wai Poon Anthony W Purcell Jie Qiao Roger R Reddel Phillip J Robinson Paola Roncada Chris Sander Jiahao Sha Erwei Song Sanjeeva Srivastava Aihua Sun Siu Kwan Sze Chao Tang Liujun Tang Ruijun Tian Juan Antonio Vizcaíno Chanjuan Wang Chen Wang Xiaowen Wang Xinxing Wang Yan Wang Tobias Weiss Mathias Wilhelm Robert Winkler Bernd Wollscheid Limsoon Wong Linhai Xie Wei Xie Tao Xu Tianhao Xu Liying Yan Jing Yang Xiao Yang John Yates Tao Yun Qiwei Zhai Bing Zhang Hui Zhang Lihua Zhang Lingqiang Zhang Pingwen Zhang Yukui Zhang Yu Zi Zheng Qing Zhong Yunping Zhu State Key Laboratory of Medical Proteomics Beijing Proteome Research Center National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics Beijing China. hefc@***. International Academy of Phronesis Medicine (Guangdong) Guangdong China. hefc@***. Department of Biology Institute of Molecular Systems Biology ETH Zurich Zurich Switzerland. aebersold@imsb.biol.ethz.ch. Macquarie Medical School Macquarie University Sydney New South Wales Australia. Institute of Pathology and Southwest Cancer Center Southwest Hospital Third Military Medical University (Army Medical University) and Key Laboratory of Tumor Immunopathology Ministry of Education of China Chongqing China. Institute of Health Service and Transfusion Medicine Beijing China. Department of Pathology and The Sidney Kimmel Comprehensive Cancer Center Johns Hopkins University Baltimore MD USA. State Key Laboratory of Medical Proteomics Beijing Proteome Research Center National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics Beijing China. Key Laboratory of Systems Biology Center for Excellence in Molecular Cell Science Shanghai Institute of Biochemistry and Cell Biology Chinese Academy of Sciences Shanghai China. Department of Nephrology First Medical Center of Chinese PLA General Hospital Nephrology Institute of the Chinese People's Liberation Army State Key Laboratory of Kidney Diseases National Clinical Research Center for Kidney Diseases Beijing Key Laboratory of Kidney Disease Research Beijing China. Institute of Chemistry Academia Sinica Taipei China. National Biomedical Imaging Center State Key Laboratory of Membrane Biology Institute of Molecular Medicine Peking-Tsinghua Center for Life Sciences College of Future Technology Peking University Beijing China. School of Biological Sciences Queen's University of Belfast Belfast UK. Functional Proteomics Laboratory Centro Nacional de Biotecnología-CSIC Madrid Spain. Computational Systems Biochemistry Research Group Ma
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Nat Methods:利用CRISPR-Cas9组合筛选发现癌症弱点
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现代生物医学进展 2017年 第17期17卷 I0001-I0001页
作者: John Paul Shen, Ana Bojorquez-Gomez, Katherine Licon, Kristin Klepper, Daniel Pekin, Alex N Beckett, Kyle Salinas Sanchez, Jason F Kreisberg, Trey Ideker John Paul Shen, Trey Ideker, Prashant Mali John Paul Shen, Dongxin Zhao, Dan Du, Assen Roguev, Jason F Kreisberg, Nevan Krogan, Lei Qi, Trey Ideker, Prashant Mali Dongxin Zhao, Chih-Chung Kuo, Prashant Mali Roman Sasik, Amanda Birmingham, Aaron N Chang, Trey Ideker Jens Luebeck, Alex Thomas Alex Thomas, Chih-Chung Kuo, Nathan E Lewis Dan Du Assen Roguev, Nevan Krogan Nathan E Lewis Lei Qi Department of Medicine Division of Genetics University of California San Diego La Jolla California USA Moores UCSD Cancer Center La Jolla California USA The Cancer Cell Map Initiative (CCMI) La Jolla and San Francisco California USA Department of Bioengineering University of California San Diego La Jolla California USA Center for Computational Biology & Bioinformatics University of California San Diego La Jolla California USA Bioinformatics & Systems Biology Program University of California San Diego La Jolla California USA Novo Nordisk Center for Biosustainability at the University of California San Diego La Jolla California USA Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research Department of Cell and Tissue Biology University of California San Francisco San Francisco California USA Department of Cellular and Molecular Pharmacology University of California San Francisco San Francisco California USA Department of Pediatrics University of California San Diego La Jolla California USA Department of Bioengineering Stanford University Stanford California USA.
导致癌症的基因突变也会削弱癌细胞,从而使得人们有机会开发选择性地杀死它们同时不影响正常细胞的药物。这一概念被称作”合成致死性(synthetic lethality)”,这是因为这些药物仅对发生突变的(或者说合成的)细胞是致命性的。在... 详细信息
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Modulating motor cortical oscillation with coordinated reset multifocal transcranial magnetic stimulation
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Journal of neurophysiology 2023年 第5期129卷 1061-1071页
作者: Kai-Hsiang Stanley Chen Tzu-Kang Hung Rupesh Kumar Chikara Yu-Ting Kuo Yi-Ping Liu Yan-Siou Dong Yih-Ru Wu Li-Wei Ko Ying-Zu Huang Robert Chen Department of Neurology National Taiwan University Hospital Hsinchu Branch Hsinchu Taiwan. Institute of Bioinformatics and Systems Biology National Yang Ming Chiao Tung University Hsinchu Taiwan. Center for Intelligent Drug Systems and Smart Bio-devices (IDS2B) National Yang Ming Chiao Tung University Hsinchu Taiwan. Jane and John Justin Neurosciences Center Cook Children's Health Care System Fort Worth Texas United States. Department of Bioengineering University of Texas at Arlington Arlington Texas United States. Department of Neurology Chang Gung Memorial Hospital and Chang Gung University College of Medicine Taoyuan Taiwan. Institute of Electrical and Control Engineering National Yang Ming Chiao Tung University Hsinchu Taiwan. Neuroscience Research Center and Department of Neurology Chang Gung Memorial Hospital and Chang Gung University College of Medicine Taoyuan Taiwan. Institute of Cognitive Neuroscience College of Health Science and Technology Taoyuan Taiwan. Krembil Research Institute University Health Network Toronto Ontario Canada. Division of Neurology Department of Medicine University of Toronto Toronto Ontario Canada. Edmond J. Safra Program in Parkinson's Disease University Health Network Toronto Ontario Canada.
According to the theory of coordinated reset (CR) stimulation, multifocal bursts of stimuli delivered in a random order with a specific interval may reduce the resonance power of the oscillatory generator in the epice... 详细信息
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An Open-Source Knowledge Graph Ecosystem for the Life Sciences
arXiv
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arXiv 2023年
作者: Callahan, Tiffany J. Tripodi, Ignacio J. Stefanski, Adrianne L. Cappelletti, Luca Taneja, Sanya B. Wyrwa, Jordan M. Casiraghi, Elena Matentzoglu, Nicolas A. Reese, Justin Silverstein, Jonathan C. Hoyt, Charles Tapley Boyce, Richard D. Malec, Scott A. Unni, Deepak R. Joachimiak, Marcin P. Robinson, Peter N. Mungall, Christopher J. Cavalleri, Emanuele Fontana, Tommaso Valentini, Giorgio Mesiti, Marco Gillenwater, Lucas A. Santangelo, Brook Vasilevsky, Nicole A. Hoehndorf, Robert Bennett, Tellen D. Ryan, Patrick B. Hripcsak, George Kahn, Michael G. Bada, Michael Baumgartner, William A. Hunter, Lawrence E. Computational Bioscience Program University of Colorado Anschutz Medical Campus AuroraCO80045 United States Department of Biomedical Informatics Columbia University Irving Medical Center New YorkNY10032 United States Computer Science Department Interdisciplinary Quantitative Biology University of Colorado Boulder BoulderCO80301 United States AnacletoLab Computer Science Department University of Milan 20122 Italy Intelligent Systems Program University of Pittsburgh PittsburghPA15260 United States Department of Physical Medicine and Rehabilitation School of Medicine University of Colorado Anschutz Medical Campus AuroraCO80045 United States Division of Environmental Genomics and Systems Biology Lawrence Berkeley National Laboratory BerkeleyCA94720 United States Semanticly Ltd Athens Greece Department of Biomedical Informatics University of Pittsburgh School of Medicine PittsburghPA15206 United States Laboratory of Systems Pharmacology Harvard Medical School BostonMA02115 United States Division of Translational Informatics University of New Mexico School of Medicine AlbuquerqueNM87131 United States SIB Swiss Institute of Bioinformatics Basel Switzerland Berlin Institute of Health at Charité-Universitatsmedizin Berlin10117 Germany ELLIS European Laboratory for Learning and Intelligent Systems Germany Department of Biomedical Informatics University of Colorado School of Medicine AuroraCO80045 United States Data Collaboration Center Critical Path Institute 1840 E River Rd. Suite 100 TucsonAZ85718 United States Computer Electrical and Mathematical Sciences & Engineering Division Computational Bioscience Research Center King Abdullah University of Science and Technology Thuwal23955-6900 Saudi Arabia Department of Pediatrics University of Colorado School of Medicine AuroraCO80045 United States Janssen Research and Development RaritanNJ08869 United States Division of General Internal Medicine University of Colorado School of Medicine A
Translational research requires data at multiple scales of biological organization. Advancements in sequencing and multi-omics technologies have increased the availability of these data, but researchers face significa... 详细信息
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OpenMM 8: Molecular Dynamics Simulation with Machine Learning Potentials
arXiv
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arXiv 2023年
作者: Eastman, Peter Galvelis, Raimondas Peláez, Raúl P. Abreu, Charlles R.A. Farr, Stephen E. Gallicchio, Emilio Gorenko, Anton Henry, Michael M. Hu, Frank Huang, Jing Krämer, Andreas Michel, Julien Mitchell, Joshua A. Pande, Vijay S. Rodrigues, João P.G.L.M. Rodriguez-Guerra, Jaime Simmonett, Andrew C. Singh, Sukrit Swails, Jason Turner, Philip Wang, Yuanqing Zhang, Ivy Chodera, John D. De Fabritiis, Gianni Markland, Thomas E. Department of Chemistry Stanford University StanfordCA94305 United States Acellera Labs C Dr Trueta 183 Barcelona08005 Spain C Dr. Aiguader 88 Barcelona08003 Spain Chemical Engineering Department School of Chemistry Federal University of Rio de Janeiro Rio de Janeiro68542 Brazil Redesign Science Inc. 180 Varick St. New YorkNY10014 United States EaStCHEM School of Chemistry University of Edinburgh EH9 3FJ United Kingdom Department of Chemistry and Biochemistry Brooklyn College The City University of New York NY United States Ph.D. Program in Chemistry Ph.D. Program in Biochemistry The Graduate Center of the City University of New York New YorkNY United States Stream HPC Koningin Wilhelminaplein 1 - 40601 Amsterdam1062 HG Netherlands Computational and Systems Biology Program Sloan Kettering Institute Memorial Sloan Kettering Cancer Center New YorkNY10065 United States Key Laboratory of Structural Biology of Zhejiang Province School of Life Sciences Westlake University 18 Shilongshan Road Zhejiang Hangzhou310024 China Department of Mathematics and Computer Science Freie Universität Berlin Arnimallee 12 Berlin14195 Germany The Open Force Field Initiative Open Molecular Software Foundation DavisCA95616 United States Andreessen Horowitz 2865 Sand Hill Rd Menlo ParkCA94025 United States Department of Structural Biology Stanford University StanfordCA94305 United States Charité Universitätsmedizin Berlin In silico Toxicology and Structural Bioinformatics Virchowweg 6 Berlin10117 Germany Laboratory of Computational Biology National Heart Lung and Blood Institute National Institutes of Health BethesdaMD20892 United States Entos Inc. 9310 Athena Circle La Jolla CA92037 United States College of Engineering Virginia Polytechnic Institute State University BlacksburgVA24061 United States Simons Center for Computational Physical Chemistry Center for Data Science New York University 24 Waverly Place New YorkNY10004 United States T
Machine learning plays an important and growing role in molecular simulation. The newest version of the OpenMM molecular dynamics toolkit introduces new features to support the use of machine learning potentials. Arbi... 详细信息
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Author Correction: Effect of de novo transcriptome assembly on transcript quantification
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Scientific reports 2019年 第1期9卷 18041页
作者: Ping-Han Hsieh Yen-Jen Oyang Chien-Yu Chen Graduate Institute of Biomedical Electronics and Bioinformatics National Taiwan University Taipei 10617 Taiwan. Department of Computer Science and Information Engineering National Taiwan University Taipei 10617 Taiwan. Department of Bio-Industrial Mechatronics Engineering National Taiwan University Taipei 10617 Taiwan. chienyuchen@ntu.edu.tw. Genome and Systems Biology Program National Taiwan University and Academia sinica Taipei 10617 Taiwan. chienyuchen@ntu.edu.tw.
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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Genetic determinants of chromatin reveal prostate cancer risk mediated by context-dependent gene regulation
Research Square
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Research Square 2021年
作者: Freedman, Matthew L. Baca, Sylvan C. Singler, Cassandra Zacharia, Soumya Seo, Ji-Heui Morova, Tunc Hach, Faraz Ding, Yi Schwarz, Tommer Huang, Chia-Chi Flora Kalita, Cynthia Groha, Stefan Pomerantz, Mark M. Wang, Victoria Linder, Simon Sweeney, Christopher J. Zwart, Wilbert Lack, Nathan A. Pasaniuc, Bogdan Takeda, David Y. Gusev, Alexander Department of Medical Oncology Dana-Farber Cancer Institute BostonMA United States Center for Functional Cancer Epigenetics Dana-Farber Cancer Institute BostonMA United States The Eli and Edythe L. Broad Institute CambridgeMA United States Laboratory of Genitourinary Cancer Pathogenesis Center for Cancer Research National Cancer Institute BethesdaMD United States Vancouver Prostate Centre University of British Columbia VancouverBC Canada Bioinformatics Interdepartmental Program UCLA Los AngelesCA United States Division of Genetics Brigham & Women’s Hospital BostonMA United States Department of Biostatistics and Computational Biology Dana-Farber Cancer Institute BostonMA United States Department of Biostatistics Harvard School of Public Health BostonMA United States Division of Oncogenomics Oncode Institute The Netherlands Cancer Institute Amsterdam Netherlands Laboratory of Chemical Biology Institute for Complex Molecular Systems Department of Biomedical Engineering Eindhoven University of Technology Eindhoven Netherlands School of Medicine Koç University Istanbul Turkey Department of Computational Medicine David Geffen School of Medicine at UCLA Los AngelesCA United States Department of Human Genetics David Geffen School of Medicine at UCLA Los AngelesCA United States Department of Pathology and Laboratory Medicine David Geffen School of Medicine at UCLA Los AngelesCA United States
Methods that link genetic variation to steady-state gene expression levels, such as expression quantitative trait loci (eQTLs), are widely used to functionally annotate trait-associated variants, but they are limited ... 详细信息
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Author Correction: Single-nucleus genomics in outbred rats with divergent cocaine addiction-like behaviors reveals changes in amygdala GABAergic inhibition
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Nature neuroscience 2023年 第11期26卷 2035页
作者: Jessica L Zhou Giordano de Guglielmo Aaron J Ho Marsida Kallupi Narayan Pokhrel Hai-Ri Li Apurva S Chitre Daniel Munro Pejman Mohammadi Lieselot L G Carrette Olivier George Abraham A Palmer Graham McVicker Francesca Telese Bioinformatics and Systems Biology Program University of California San Diego La Jolla CA USA. Integrative Biology Laboratory Salk Institute for Biological Studies La Jolla CA USA. Department of Psychiatry University of California San Diego La Jolla CA USA. Department of Medicine University of California San Diego La Jolla CA USA. Department of Integrative Structural and Computational Biology The Scripps Research Institute La Jolla CA USA. Center for Immunity and Immunotherapies Seattle Children's Research Institute Seattle WA USA. Department of Pediatrics University of Washington School of Medicine Seattle WA USA. Department of Genome Sciences University of Washington Seattle WA USA. Institute for Genomic Medicine University of California San Diego La Jolla CA USA. Bioinformatics and Systems Biology Program University of California San Diego La Jolla CA USA. gmcvicker@salk.edu. Integrative Biology Laboratory Salk Institute for Biological Studies La Jolla CA USA. gmcvicker@salk.edu. Department of Psychiatry University of California San Diego La Jolla CA USA. ftelese@health.ucsd.edu. Department of Medicine University of California San Diego La Jolla CA USA. ftelese@health.ucsd.edu.
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