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arXiv 2023年

作者： Luijken, Kim Morzywolek, Pawel van Amsterdam, Wouter Cinà, Giovanni Hoogland, Jeroen Keogh, Ruth Krijthe, Jesse Magliacane, Sara van Ommen, Thijs Peek, Niels Putter, Hein van Smeden, Maarten Sperrin, Matthew Wang, Junfeng Weir, Daniala Didelez, Vanessa van Geloven, Nan Department of Epidemiology Julius Center for Health Sciences and Primary Care University Medical Center Utrecht Utrecht Netherlands Department of Applied Mathematics Computer Science and Statistics Ghent University Ghent Belgium Department of Statistics University of Washington Seattle United States Department of Medical Informatics Amsterdam University Medical Centers Amsterdam Netherlands Institute for Logic Language and Computation University of Amsterdam Amsterdam Netherlands Pacmed Amsterdam Netherlands Department of Epidemiology and Data Science Amsterdam University Medical Centers Amsterdam Netherlands Department of Medical Statistics London School of Hygiene & Tropical Medicine Keppel Street London United Kingdom Pattern Recognition and Bio-Informatics Group EEMCS Delft University of Technology Delft Netherlands Amsterdam Machine Learning Lab University of Amsterdam Amsterdam Netherlands Department of Information and Computing Sciences Utrecht University Utrecht Netherlands Division of Informatics Imaging and Data Science Faculty of Biology Medicine and Health University of Manchester Manchester Academic Health Science Centre Manchester United Kingdom Department of Biomedical Data Sciences Leiden University Medical Center Leiden Netherlands Division of Pharmacoepidemiology and Clinical Pharmacology Department of Pharmaceutical Sciences Utrecht University Utrecht Netherlands Department of Biometry and Data Management Leibniz Institute for Prevention Research Epidemiology - BIPS Bremen Germany Faculty of Mathematics/Computer Science University of Bremen Bremen Germany

Prediction models are used amongst others to inform medical decisions on interventions. Typically, individuals with high risks of adverse outcomes are advised to undergo an intervention while those at low risk are advised to refrain from it. Standard prediction models do not always provide risks that are relevant to inform such decisions: e.g., an individual may be estimated to be at low risk because similar individuals in the past received an intervention which lowered their risk. Therefore, prediction models supporting decisions should target risks belonging to defined intervention strategies. Previous works on prediction under interventions assumed that the prediction model was used only at one time point to make an intervention decision. In clinical practice, intervention decisions are rarely made only once: they might be repeated, deferred and re-evaluated. This requires estimated risks under interventions that can be reconsidered at several potential decision moments. In the current work, we highlight key considerations for formulating estimands in sequential prediction under interventions that can inform such intervention decisions. We illustrate these considerations by giving examples of estimands for a case study about choosing between vaginal delivery and cesarean section for women giving birth. Our formalization of prediction tasks in a sequential, causal, and estimand context provides guidance for future studies to ensure that the right question is answered and appropriate causal estimation approaches are chosen to develop sequential prediction models that can inform intervention decisions. © 2023, CC BY.

关键词： Forecasting

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SRBench++: Principled Benchmarking of Symbolic Regression With Domain-Expert Interpretation

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IEEE Transactions on Evolutionary Computation 2024年 1-1页

作者： de Franca, F.O. Virgolin, M. Kommenda, M. Majumder, M.S. Cranmer, M. Espada, G. Ingelse, L. Fonseca, A. Landajuela, M. Petersen, B. Glatt, R. Mundhenk, N. Lee, C.S. Hochhalter, J.D. Randall, D.L. Kamienny, P. Zhang, H. Dick, G. Simon, A. Burlacu, B. Kasak, Jaan Machado, Meera Wilstrup, Casper Cavaz, W.G.L. Federal University of ABC Santo Andre Brazil Evolutionary Intelligence group Centrum Wiskunde and Informatica Science Park Amsterdam Netherlands University of Applied Sciences Upper Austria Hagenberg Austria Computational Health Informatics Program Boston Children’s Hospital Harvard Medical School Boston USA Center for Computational Astrophysics Flatiron Institute and Department of Astrophysical Sciences of Princeton University USA LASIGE Faculdade de Ciências Universidade de Lisboa Lisboa Portugal Computational Engineering Division Lawrence Livermore National Laboratory Livermore USA Department of Mechanical Engineering University of Utah Utah USA Meta FAIR France Victoria University of Wellington School of Engineering and Computer Science New Zealand University of otago Department of Information Science New Zealand Institut für Angewandte Physik Universität TübingenMax Planck Institute for Intelligent Systems Tübingen Germany Abzu AI Orient Plads 1 Nordhavn Denmark

Symbolic regression searches for analytic expressions that accurately describe studied phenomena. The main promise of this approach is that it may return an interpretable model that can be insightful to users, while maintaining high accuracy. The current standard for benchmarking these algorithms is SRBench, which evaluates methods on hundreds of datasets that are a mix of real-world and simulated processes spanning multiple domains. At present, the ability of SRBench to evaluate interpretability is limited to measuring the size of expressions on real-world data, and the exactness of model forms on synthetic data. In practice, model size is only one of many factors used by subject experts to determine how interpretable a model truly is. Furthermore, SRBench does not characterize algorithm performance on specific, challenging sub-tasks of regression such as feature selection and evasion of local minima. In this work, we propose and evaluate an approach to benchmarking SR algorithms that addresses these limitations of SRBench by 1) incorporating expert evaluations of interpretability on a domain-specific task, and 2) evaluating algorithms over distinct properties of data science tasks. We evaluate 12 modern symbolic regression algorithms on these benchmarks and present an in-depth analysis of the results, discuss current challenges of symbolic regression algorithms and highlight possible improvements for the benchmark itself. Authors

关键词： Benchmarking

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Structural, optical, and thermal properties of BN thin films grown on diamond via pulsed laser deposition

arXiv

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arXiv 2023年

作者： Biswas, Abhijit Alvarez, Gustavo A. Li, Tao Christiansen-Salameh, Joyce Jeong, Eugene Puthirath, Anand B. Iyengar, Sathvik Ajay Li, Chenxi Gray, Tia Zhang, Xiang Pieshkov, Tymofii S. Kannan, Harikishan Elkins, Jacob Vajtai, Robert Birdwell, A. Glen Neupane, Mahesh R. Garratt, Elias J. Pate, Bradford B. Ivanov, Tony G. Zhao, Yuji Tian, Zhiting Ajayan, Pulickel M. Department of Materials Science and Nanoengineering Rice University HoustonTX77005 United States Sibley School of Mechanical and Aerospace Engineering Cornell University IthacaNY14853 United States Department of Electrical and Computer Engineering Rice University HoustonTX77005 United States Applied Physics Graduate Program Smalley-Curl Institute Rice University HoustonTX77005 United States DEVCOM Army Research Laboratory RF Devices and Circuits AdelphiMD20783 United States Naval Research Laboratory Chemistry Division WashingtonDC20375 United States

Heterostructures based on ultrawide-bandgap (UWBG) semiconductors (bandgap >4.0 eV), such as boron nitride (BN) and diamond, hold significant importance for the development of high-power electronics in the next generation. However, achieving in-situ hetero-epitaxy of BN/diamond or vice versa remains exceptionally challenging due to the complex growth kinetics involved. In this study, we have grown BN thin film on (100) single crystal diamonds using pulsed laser deposition and investigated its structural, magnetic, optical, and thermal properties. The structural analyses confirmed the growth of BN films, which exhibited diamagnetic behavior at room temperature. Notably, the film demonstrated anisotropic refractive index characteristics within the visible-to-near-infrared wavelength range. The room temperature cross-plane thermal conductivity of BN is 1.53 (± 0.77) W/mK, while the thermal conductance of the BN/diamond interface is 20 (± 2) MW/m2K. These findings have significant implications for a range of device applications based on UWBG BN/diamond heterostructures. © 2023, CC BY.

关键词： Diamonds

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Imaging Atomic-Scale Chemistry from Fused Multi-Modal Electron Microscopy

arXiv

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arXiv 2022年

作者： Schwartz, Jonathan Di, Zichao Wendy Jiang, Yi Fielitz, Alyssa J. Ha, Don-Hyung Perera, Sanjaya D. Baggari, Ismail El Robinson, Richard D. Fessler, Jeffrey A. Ophus, Colin Rozeveld, Steve Hovden, Robert Department of Materials Science and Engineering University of Michigan Ann ArborMI United States Mathematics and Computer Science Division Argonne National Laboratory LemontIL United States Advanced Photon Source Facility Argonne National Laboratory LemontIL United States Dow Chemical Co. MidlandMI United States Department of Material Science and Engineering Cornell University IthacaNY United States School of Integrative Engineering Chung-Ang University Seoul Korea Republic of Department of Physics Cornell University IthacaNY United States The Rowland Institute at Harvard CambridgeMA United States Department of Electrical Engineering and Computer Science University of Michigan Ann ArborMI United States National Center for Electron Microscopy Molecular Foundry Lawrence Berkeley National Laboratory BerkeleyCA United States Applied Physics Program University of Michigan Ann ArborMI United States

Efforts to map atomic-scale chemistry at low doses with minimal noise using electron microscopes are fundamentally limited by inelastic interactions. Here, fused multi-modal electron microscopy offers high signal-to-noise ratio (SNR) recovery of material chemistry at nano- and atomic- resolution by coupling correlated information encoded within both elastic scattering (high-angle annular dark field (HAADF)) and inelastic spectroscopic signals (electron energy loss (EELS) or energy-dispersive x-ray (EDX)). By linking these simultaneously acquired signals, or modalities, the chemical distribution within nanomaterials can be imaged at significantly lower doses with existing detector hardware. In many cases, the dose requirements can be reduced by over one order of magnitude. This high SNR recovery of chemistry is tested against simulated and experimental atomic resolution data of heterogeneous nanomaterials. © 2022, CC BY.

关键词： Electron microscopy

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Retraction Note: Overlapping gait pattern recognition using regression learning for elderly patient monitoring

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Journal of Ambient Intelligence and Humanized Computing 2024年第1期15卷 265-265页

作者： Youssef, Ahmed E. Kotb, Yasser Fouad, Hassan Mustafa, Ibrahim College of Computer and Information Sciences King Saud University Riyadh Saudi Arabia Department of Computers and Systems Engineering Faculty of Engineering at Helwan Helwan University Cairo Egypt Computer Science Division Department of Mathematics Faculty of Science Ain Shams University Cairo Egypt Applied Medical Science Department Community College King Saud University Riyadh Saudi Arabia Biomedical Engineering Department Faculty of Engineering Helwan University Cairo Egypt

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On the Efficient Evaluation of the Azimuthal Fourier Components of the Green's Function for Helmholtz's Equation in Cylindrical Coordinates

arXiv

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arXiv 2021年

作者： Garritano, James Kluger, Yuval Rokhlin, Vladimir Serkh, Kirill Program in Applied Mathematics Yale University New HavenCT06511 United States Yale School of Medicine New HavenCT06511 United States Dept. of Mathematics Yale University New HavenCT06511 United States Dept. of Math. and Computer Science University of Toronto TorontoONM5S 2E4 Canada

In this manuscript, we develop an efficient algorithm to evaluate the azimuthal Fourier components of the Green's function for the Helmholtz equation in cylindrical coordinates. A computationally efficient algorithm for this modal Green's function is essential for solvers for electromagnetic scattering from bodies of revolution (e.g., radar cross sections, antennas). Current algorithms to evaluate this modal Green's function become computationally intractable when the source and target are close or when the wavenumber is large. Furthermore, most state of the art methods cannot be easily parallelized. In this manuscript, we present an algorithm for evaluating the modal Green's function that has performance independent of both source-to-target proximity and wavenumber, and whose cost grows as $O(m)$, where $m$ is the Fourier mode. Furthermore, our algorithm is embarrassingly parallelizable. © 2021, CC BY.

关键词： Bodies of revolution

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Efficient MedSAMs: Segment Anything in Medical Images on Laptop

arXiv

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arXiv 2024年

作者： Ma, Jun Li, Feifei Kim, Sumin Asakereh, Reza Le, Bao-Hiep Nguyen-Vu, Dang-Khoa Pfefferle, Alexander Wei, Muxin Gao, Ruochen Lyu, Donghang Yang, Songxiao Purucker, Lennart Marinov, Zdravko Staring, Marius Lu, Haisheng Dao, Thuy Thanh Ye, Xincheng Li, Zhi Brugnara, Gianluca Vollmuth, Philipp Foltyn-Dumitru, Martha Cho, Jaeyoung Mahmutoglu, Mustafa Ahmed Bendszus, Martin Pflüger, Irada Rastogi, Aditya Ni, Dong Yang, Xin Zhou, Guang-Quan Wang, Kaini Heller, Nicholas Papanikolopoulos, Nikolaos Weight, Christopher Tong, Yubing Udupa, Jayaram K. Patrick, Cahill J. Wang, Yaqi Zhang, Yifan Contijoch, Francisco McVeigh, Elliot Ye, Xin He, Shucheng Haase, Robert Pinetz, Thomas Radbruch, Alexander Krause, Inga Kobler, Erich He, Jian Tang, Yucheng Yang, Haichun Huo, Yuankai Luo, Gongning Kushibar, Kaisar Amankulov, Jandos Toleshbayev, Dias Mukhamejan, Amangeldi Egger, Jan Pepe, Antonio Gsaxner, Christina Luijten, Gijs Fujita, Shohei Kikuchi, Tomohiro Wiestler, Benedikt Kirschke, Jan S. de la Rosa, Ezequiel Bolelli, Federico Lumetti, Luca Grana, Costantino Xie, Kunpeng Wu, Guomin Puladi, Behrus Martín-Isla, Carlos Lekadir, Karim Campello, Victor M. Shao, Wei Brisbane, Wayne Jiang, Hongxu Wei, Hao Yuan, Wu Li, Shuangle Zhou, Yuyin Wang, Bo AI Collaborative Centre University Health Network Department of Laboratory Medicine and Pathobiology University of Toronto Vector Institute Toronto Canada Peter Munk Cardiac Centre University Health Network Toronto Canada Toronto General Hospital Research Institute University Health Network Department of Computer Science University of Toronto University Health Network Vector Institute Toronto Canada University of Science Vietnam National University Ho Chi Minh City Viet Nam Institute of Computer Science University of Freiburg Freiburg Germany School of Medicine and Health Harbin Institute of Technology Harbin China Division of Image Processing Department of Radiology Leiden University Medical Center Leiden Netherlands Department of System and Control Engineering School of Engineering Institute of Science Tokyo Formerly Tokyo Institute of Technology Tokyo Japan Institute for Anthropomatics and Robotics Karlsruhe Institute of Technology Karlsruhe Germany School of Information and Communication Engineering University of Electronic Science and Technology of China Chengdu China School of Electrical Engineering and Computer Science University of Queensland Brisbane Australia School of Cyberspace Hangzhou Dianzi University Hangzhou China Division for Computational Radiology and Clinical AI The Department of Neuroradiology University Hospital Bonn Germany Division for Computational Radiology and Clinical AI The Department of Neuroradiology University Hospital Bonn Germany Department of Neuroradiology Heidelberg University Hospital Heidelberg Germany Division for Computational Radiology and Clinical AI Department of Neuroradiology University Hospital Bonn Germany School of Biomedical Engineering Shenzhen University Shenzhen China School of Biological Science and Medical Engineering Southeast University Nanjing China Department of Urology Cleveland Clinic Cleveland United States Department of Computer Science University of Minnesota Minneapolis United St

Promptable segmentation foundation models have emerged as a transformative approach to addressing the diverse needs in medical images, but most existing models require expensive computing, posing a big barrier to their adoption in clinical practice. In this work, we organized the first international competition dedicated to promptable medical image segmentation, featuring a large-scale dataset spanning nine common imaging modalities from over 20 different institutions. The top teams developed lightweight segmentation foundation models and implemented an efficient inference pipeline that substantially reduced computational requirements while maintaining state-of-the-art segmentation accuracy. Moreover, the post-challenge phase advanced the algorithms through the design of performance booster and reproducibility tasks, resulting in improved algorithms and validated reproducibility of the winning solution. Furthermore, the best-performing algorithms have been incorporated into the open-source software with a user-friendly interface to facilitate clinical adoption. The data and code are publicly available to foster the further development of medical image segmentation foundation models and pave the way for impactful real-world applications. © 2024, CC BY-NC-SA.

关键词： Open source software

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On the initial value problem for a class of nonlinear biharmonic equation with time-fractional derivative

arXiv

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arXiv 2021年

作者： Nguyen, Anh Tuan Caraballo, Tomás Tuan, Nguyen Huy Division of Applied Mathematics Thu Dau Mot University Duong Province Binh Viet Nam Departamento de Ecuaciones Diferenciales y Análisis Numérico C/ Tarfia s/n Facultad de Matemáticas Universidad de Sevilla Sevilla41080 Spain Department of Mathematics and Computer Science University of Science Ho Chi Minh City Viet Nam Vietnam National University Ho Chi Minh City Viet Nam

In this work, we investigate the IVP for a time-fractional fourth-order equation with nonlinear source terms. More specifically, we consider the time-fractional biharmonic with exponential nonlinearity and the time-fractional Cahn-Hilliard equation. By using the Fourier transform concept, the generalized formula for the mild solution as well as the smoothing effects of resolvent operators are proved. For the IVP associated with the first one, by using the Orlicz space with the function Ξ(z) = e|z|p − 1 and some embeddings between it and the usual Lebesgue spaces, we prove that the solution is a global-in-time solution or it shall blow up in a finite time if the initial value is regular. In the case of singular initial data, the local-in-time/global-in-time existence and uniqueness are derived. Also, the regularity of the mild solution is investigated. For the IVP associated with the second one, some modifications to the generalized formula are made to deal with the nonlinear term. We also establish some important estimates for the derivatives of resolvent operators, they are the basis for using the Picard sequence to prove the local-in-time existence of the *** Codes 26A33, 33E12, 35B40, 35K30, 35K58 © 2021, CC BY.

关键词： Banach spaces

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Ferroelectric transistors based on shear-transformation-mediated rhombohedral-stacked molybdenum disulfide

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Nature Electronics 2024年第1期7卷 29-38页

作者： Yang, Tilo H. Liang, Bor-Wei Hu, Hsiang-Chi Chen, Fu-Xiang Ho, Sheng-Zhu Chang, Wen-Hao Yang, Liu Lo, Han-Chieh Kuo, Tzu-Hao Chen, Jyun-Hong Lin, Po-Yen Simbulan, Kristan Bryan Luo, Zhao-Feng Chang, Alice Chinghsuan Kuo, Yi-Hao Ku, Yu-Seng Chen, Yi-Cheng Huang, You-Jia Chang, Yu-Chen Chiang, Yu-Fan Lu, Ting-Hua Lee, Min-Hung Li, Kai-Shin Wu, Menghao Chen, Yi-Chun Lin, Chun-Liang Lan, Yann-Wen Department of Physics National Taiwan Normal University Taipei Taiwan Taiwan Semiconductor Research Institute National Applied Research Laboratories Hsinchu Taiwan Department of Electrophysics National Yang Ming Chiao Tung University Hsinchu Taiwan Department of Physics National Cheng Kung University Tainan Taiwan School of Physics Huazhong University of Science and Technology Wuhan China Institute of Cellular and Organismic Biology Academia Sinica Taipei Taiwan Department of Mathematics and Physics University of Santo Tomas Manila Philippines Program for Semiconductor Devices Materials and Hetero-integration Graduate School of Advanced Technology National Taiwan University Taipei Taiwan Hsinchu Taiwan Department of Physics National Taiwan University Taipei Taiwan Department of Electrical Engineering and Computer Science Massachusetts Institute of Technology CambridgeMA United States

To develop low-power, non-volatile computing-in-memory device using ferroelectric transistor technologies, ferroelectric channel materials with scaled thicknesses are required. Two-dimensional semiconductors, such as molybdenum disulfide (MoS2), equipped with sliding ferroelectricity could provide an answer. However, achieving switchable electric polarization in epitaxial MoS2 remains challenging due to the absence of mobile domain boundaries. Here we show that polarity-switchable epitaxial rhombohedral-stacked (3R) MoS2 can be used as a ferroelectric channel in ferroelectric memory transistors. We show that a shear transformation can spontaneously occur in 3R MoS2 epilayers, producing heterostructures with stable ferroelectric domains embedded in a highly dislocated and unstable non-ferroelectric matrix. This diffusionless phase transformation process produces mobile screw dislocations that enable collective polarity control of 3R MoS2 via an electric field. Polarization–electric-field measurements reveal a switching field of 0.036 V nm−1 for shear-transformed 3R MoS2. Our sliding ferroelectric transistors are non-volatile memory units with thicknesses of only two atomic layers and exhibit an average memory window of 7 V with an applied voltage of 10 V, retention times greater than 104 seconds and endurance greater than 104 cycles. © 2023, The Author(s), under exclusive licence to Springer Nature Limited.

关键词： Molybdenum disulfide

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Autonomous Multi-Modal Chemical Tomography using Bayesian Optimization

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Microscopy and Microanalysis 2024年第SUPPLEMENT_1期30卷

作者： Millsaps, William Schwartz, Jonathan Manassa, Jason Wendy Di, Zichao Jiang, Yi Hovden, Robert Department of Nuclear Engineering Radiological Sciences University of Michigan Ann Arbor MI US Chan Zuckerberg Imaging Institute Redwood City CA USA Department of Materials Science and Engineering University of Michigan Ann Arbor MI US Mathematics and Computer Science Division Argonne National Laboratory Lemont IL US Advanced Photon Source Facility Argonne National Laboratory Lemont IL US Applied Physics Program University of Michigan Ann Arbor MI US

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