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arXiv 2021年

作者： Chung, Joaquin Kanter, Gregory Lauk, Nikolai Valivarthi, Raju Wu, Wenji Ceballos, Russell R. Peña, Cristián Sinclair, Neil Thomas, Jordan Xie, Si Kettimuthu, Rajkumar Kumar, Prem Spentzouris, Panagiotis Spiropulu, Maria Data Science and Learning Division Argonne National Laboratory 9700 S Cass Ave. LemontIL60439 United States University of Chicago Consortium for Advanced Science and Engineering 924 E 57th St ChicagoIL60637 United States NuCrypt LLC 1840 Oak Ave EvanstonIL60201 United States Center for Photonic Communication and Computing Department of Electrical and Computer Engineering McCormick School of Engineering and Applied Science Northwestern University 2145 Sheridan Road EvanstonIL60208-3118 United States Division of Physics Mathematics and Astronomy California Institute of Technology 1200 E. California Blvd. PasadenaCA91125 United States California Institute of Technology 1200 E. California Blvd. PasadenaCA91125 United States Fermi National Accelerator Laboratory Kirk Rd and Pine St BataviaIL60510 United States Department of Chemistry Physics and Engineering Studies Chicago State University 9501 S. King Dr. ChicagoIL60628 United States Pittsburgh Quantum Institute B4 Thaw Hall 4061 O'Hara Street PittsburghPA15260 United States John A. Paulson School of Engineering and Applied Sciences Harvard University 29 Oxford St. CambridgeMA02138 United States 2205 Tech Drive Suite 1-160 EvanstonIL60208 United States Department of Physics and Astronomy Northwestern University 2145 Sheridan Road EvanstonIL60208-3112 United States

The Illinois Express Quantum Network (IEQNET) is a program to realize metro-scale quantum networking over deployed optical fiber using currently available technology. IEQNET consists of multiple sites that are geographically dispersed in the Chicago metropolitan area. Each site has one or more quantum nodes (Q-nodes) representing the communication parties in a quantum network. Q-nodes generate or measure quantum signals such as entangled photons and communicate the results via standard, classical, means. The entangled photons in IEQNET nodes are generated at multiple wavelengths, and are selectively distributed to the desired users via optical switches. Here we describe the network architecture of IEQNET, including the Internet-inspired layered hierarchy that leverages software-defined-networking (SDN) technology to perform traditional wavelength routing and assignment between the Q-nodes. Specifically, SDN decouples the control and data planes, with the control plane being entirely classical. Issues associated with synchronization, calibration, network monitoring, and scheduling will be discussed. An important goal of IEQNET is demonstrating the extent to which the control plane can coexist with the data plane using the same fiber lines. This goal is furthered by the use of tunable narrow-band optical filtering at the receivers and, at least in some cases, a wide wavelength separation between the quantum and classical channels. We envision IEQNET to aid in developing robust and practical quantum networks by demonstrating metro-scale quantum communication tasks such as entanglement distribution and quantum-state teleportation. © 2021, CC BY.

关键词： Optical fibers

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Quantum Simulation for High-Energy Physics

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PRX Quantum 2023年第2期4卷 027001-027001页

作者： Christian W. Bauer Zohreh Davoudi A. Baha Balantekin Tanmoy Bhattacharya Marcela Carena Wibe A. de Jong Patrick Draper Aida El-Khadra Nate Gemelke Masanori Hanada Dmitri Kharzeev Henry Lamm Ying-Ying Li Junyu Liu Mikhail Lukin Yannick Meurice Christopher Monroe Benjamin Nachman Guido Pagano John Preskill Enrico Rinaldi Alessandro Roggero David I. Santiago Martin J. Savage Irfan Siddiqi George Siopsis David Van Zanten Nathan Wiebe Yukari Yamauchi Kübra Yeter-Aydeniz Silvia Zorzetti Physics Division Lawrence Berkeley National Laboratory Berkeley California 94720 USA Department of Physics Maryland Center for Fundamental Physics and the NSF Institute for Robust Quantum Simulation University of Maryland College Park Maryland 20742 USA Department of Physics University of Wisconsin Madison Wisconsin 53706 USA T-2 Los Alamos National Laboratory Los Alamos New Mexico 87545 USA Fermi National Accelerator Laboratory Batavia Illinois 60510 USA Enrico Fermi Institute University of Chicago Chicago Illinois 60637 USA Kavli Institute for Cosmological Physics University of Chicago Chicago Illinois 60637 USA Department of Physics University of Chicago Chicago Illinois 60637 USA Department of Physics and Illinois Center for the Advanced Study of the Universe and Illinois Quantum Information Science and Technology Center University of Illinois Urbana Illinois 61801 USA QuEra Computing Inc Boston Massachusetts 02135 USA Department of Mathematics University of Surrey Guildford Surrey GU2 7XH United Kingdom Center for Nuclear Theory Department of Physics and Astronomy Stony Brook University New York 11794-3800 USA Department of Physics Brookhaven National Laboratory Upton New York 11973 USA Peng Huanwu Center for Fundamental Theory Hefei Anhui 230026 China Interdisciplinary Center for Theoretical Study University of Science and Technology of China Hefei Anhui 230026 China Pritzker School of Molecular Engineering Chicago Quantum Exchange and Kadanoff Center for Theoretical Physics University of Chicago Illinois 60637 USA qBraid Co. Harper Court 5235 Chicago Illinois 60615 USA Department of Physics Harvard University Cambridge Massachusetts 02138 USA Department of Physics and Astronomy University of Iowa Iowa City Iowa 52242 USA Duke Quantum Center Duke University Durham North Carolina 27701 USA Department of Electrical and Computer Engineering Duke University Durham North Carolina 27708 USA Department of Physics Duke University

It is for the first time that quantum simulation for high-energy physics (HEP) is studied in the U.S. decadal particle-physics community planning, and in fact until recently, this was not considered a mainstream topic in the community. This fact speaks of a remarkable rate of growth of this subfield over the past few years, stimulated by the impressive advancements in quantum information sciences (QIS) and associated technologies over the past decade, and the significant investment in this area by the government and private sectors in the U.S. and other countries. High-energy physicists have quickly identified problems of importance to our understanding of nature at the most fundamental level, from tiniest distances to cosmological extents, that are intractable with classical computers but may benefit from quantum advantage. They have initiated, and continue to carry out, a vigorous program in theory, algorithm, and hardware co-design for simulations of relevance to the HEP mission. This Roadmap is an attempt to bring this exciting and yet challenging area of research to the spotlight, and to elaborate on what the promises, requirements, challenges, and potential solutions are over the next decade and beyond.

关键词： Quantum simulation

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Measurement and interpretation of same-sign W boson pair production in association with two jets in pp collisions at (Formula presented.) TeV with the ATLAS detector

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Journal of High Energy Physics 2024年第4期2024卷 26页

作者： Aad, G. Abbott, B. Abeling, K. Abicht, N.J. Abidi, S.H. Aboulhorma, A. Abramowicz, H. Abreu, H. Abulaiti, Y. Abusleme Hoffman, A.C. Acharya, B.S. Adam Bourdarios, C. Adamczyk, L. Adamek, L. Addepalli, S.V. Addison, M.J. Adelman, J. Adiguzel, A. Adye, T. Affolder, A.A. Afik, Y. Agaras, M.N. Agarwala, J. Aggarwal, A. Agheorghiesei, C. Ahmad, A. Ahmadov, F. Ahmed, W.S. Ahuja, S. Ai, X. Aielli, G. Aikot, A. Ait Tamlihat, M. Aitbenchikh, B. Aizenberg, I. Akbiyik, M. Åkesson, T.P.A. Akimov, A.V. Akiyama, D. Akolkar, N.N. Al Khoury, K. Alberghi, G.L. Albert, J. Albicocco, P. Albouy, G.L. Alderweireldt, S. Aleksa, M. Aleksandrov, I.N. Alexa, C. Alexopoulos, T. Alfonsi, F. Algren, M. Alhroob, M. Ali, B. Ali, H.M.J. Ali, S. Alibocus, S.W. Aliev, M. Alimonti, G. Alkakhi, W. Allaire, C. Allbrooke, B.M.M. Allen, J.F. Allendes Flores, C.A. Allport, P.P. Aloisio, A. Alonso, F. Alpigiani, C. Alvarez Estevez, M. Alvarez Fernandez, A. Alves Cardoso, M. Alviggi, M.G. Aly, M. Amaral Coutinho, Y. Ambler, A. Amelung, C. Amerl, M. Ames, C.G. Amidei, D. Amor Dos Santos, S.P. Amos, K.R. Ananiev, V. Anastopoulos, C. Andeen, T. Anders, J.K. Andrean, S.Y. Andreazza, A. Angelidakis, S. Angerami, A. Anisenkov, A.V. Annovi, A. Antel, C. Anthony, M.T. Antipov, E. Antonelli, M. Anulli, F. Aoki, M. Aoki, T. Aparisi Pozo, J.A. Aparo, M.A. Aperio Bella, L. Appelt, C. Apyan, A. Aranzabal, N. Arcangeletti, C. Arce, A.T.H. Arena, E. Arguin, J.-F. Argyropoulos, S. Arling, J.-H. Arnaez, O. Arnold, H. Artoni, G. Asada, H. Asai, K. Asai, S. Asbah, N.A. Assamagan, K. Astalos, R. Atashi, S. Atkin, R.J. Atkinson, M. Atmani, H. Atmasiddha, P.A. Augsten, K. Auricchio, S. Auriol, A.D. Austrup, V.A. Avolio, G. Axiotis, K. Azuelos, G. Babal, D. Bachacou, H. Bachas, K. Bachiu, A. Backman, F. Badea, A. Bagnaia, P. Bahmani, M. Bailey, A.J. Bailey, V.R. Baines, J.T. Baines, L. Bakalis, C. Baker, O.K. Bakos, E. Bakshi Gupta, D. Balakrishnan, V. Balasubramanian, R. Baldin, E.M. Balek, P. Ballabene, E. Balli, F. Baltes, L.M. Balunas, W.K. Balz, J. Banas, E. Bandieramont Department of Physics University of Adelaide Department of Physics University of Alberta Department of Physics Ankara University Division of Physics TOBB University of Economics and Technology LAPP Université Savoie Mont Blanc CNRS/IN2P3 APC Université Paris Cité CNRS/IN2P3 High Energy Physics Division Argonne National Laboratory Department of Physics University of Arizona Department of Physics University of Texas at Arlington Physics Department National and Kapodistrian University of Athens Physics Department National Technical University of Athens Department of Physics University of Texas at Austin Institute of Physics Azerbaijan Academy of Sciences Institut de Física d’Altes Energies (IFAE) Barcelona Institute of Science and Technology Institute of High Energy Physics Chinese Academy of Sciences Physics Department Tsinghua University Department of Physics Nanjing University School of Science Shenzhen Campus of Sun Yat-sen University University of Chinese Academy of Science (UCAS) Institute of Physics University of Belgrade Department for Physics and Technology University of Bergen Physics Division Lawrence Berkeley National Laboratory University of California Institut für Physik Humboldt Universität zu Berlin Albert Einstein Center for Fundamental Physics and Laboratory for High Energy Physics University of Bern School of Physics and Astronomy University of Birmingham Department of Physics Bogazici University Department of Physics Engineering Gaziantep University Department of Physics Istanbul University Facultad de Ciencias y Centro de Investigaciónes Universidad Antonio Nariño Departamento de Física Universidad Nacional de Colombia Dipartimento di Fisica e Astronomia A. Righi Università di Bologna INFN Sezione di Bologna Physikalisches Institut Universität Bonn Department of Physics Boston University Department of Physics Brandeis University Transilvania University of Brasov Horia Hulubei National Institute of Physics and Nuclear Engineering Department of Physics Alexandru

This paper presents the measurement of fiducial and differential cross sections for both the inclusive and electroweak production of a same-sign W-boson pair in association with two jets (W^±W^±jj) using 139 fb⁻¹ of proton-proton collision data recorded at a centre-of-mass energy of s = 13 TeV by the ATLAS detector at the Large Hadron Collider. The analysis is performed by selecting two same-charge leptons, electron or muon, and at least two jets with large invariant mass and a large rapidity difference. The measured fiducial cross sections for electroweak and inclusive W^±W^±jj production are 2.92 ± 0.22 (stat.) ± 0.19 (syst.) fb and 3.38 ± 0.22 (stat.) ± 0.19 (syst.) fb, respectively, in agreement with Standard Model predictions. The measurements are used to constrain anomalous quartic gauge couplings by extracting 95% confidence level intervals on dimension-8 operators. A search for doubly charged Higgs bosons H^±± that are produced in vector-boson fusion processes and decay into a same-sign W boson pair is performed. The largest deviation from the Standard Model occurs for an H^±± mass near 450 GeV, with a global significance of 2.5 standard deviations. © The Author(s) 2024.

关键词： Hadron-Hadron Scattering Vector Boson Production

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Colossal enhancement of spin transmission through magnon confinement in an antiferromagnet

arXiv

引用

arXiv 2025年

作者： Husain, Sajid Ramesh, Maya Li, Xinyan Prokhorenko, Sergei Ojha, Shashank Kumar Ross, Aiden Das, Koushik Zhao, Boyang Park, Hyeon Woo Meisenheimer, Peter Nahas, Yousra Caretta, Lucas Martin, Lane W. Kim, Se Kwon Yao, Zhi Wen, Haidan Salahuddin, Sayeef Chen, Long-Qing Han, Yimo de Sousa, Rogério Bellaiche, Laurent Bibes, Manuel Schlom, Darrell G. Ramesh, Ramamoorthy Department of Materials Science and Engineering University of California BerkeleyCA94720 United States Rice University Materials Science and NanoEngineering HoustonTX United States Department of Materials Science and Engineering Cornell University IthacaNY14853 United States Rice Advanced Materials Institute Rice University HoustonTX77005 United States Smart Ferroic Materials Center Physics Department Institute for Nanoscience and Engineering University of Arkansas FayettevilleAR United States Department of Materials Science and Engineering Materials Research Institute Pennsylvania State University University ParkPA16802 United States Department of Electrical Engineering and Computer Sciences University of California BerkeleyCA94720 United States Department of Chemistry University of California BerkeleyCA94720 United States Materials Science Division Argonne National Laboratory LemontIL60439 United States Department of Physics Korea Advanced Institute of Science and Technology Daejeon Korea Republic of School of Engineering Brown University ProvidenceRI77005 United States Departments of Chemistry and Physics and Astronomy Rice University HoustonTX77005 United States Applied Mathematics and Computational Research Division Lawrence Berkeley National Laboratory CA94720 United States Advanced Photon Source Argonne National Laboratory LemontIL60439 United States Materials Science Division Lawrence Berkeley National Laboratory BerkeleyCA94720 United States Rice Advanced Materials Institute Smalley-Curl Institute Ken Kennedy Institute Rice University HoustonTX77005 United States Department of Physics and Astronomy University of Victoria VictoriaBCV8W 2Y2 Canada Centre for Advanced Materials and Related Technology University of Victoria VictoriaBCV8W 2Y2 Canada Department of Materials Science and Engineering Tel Aviv University Ramat Aviv Tel Aviv6997801 Israel Laboratoire Albert Fert CNRS Thales Université Paris-Saclay Pa

Since Felix Bloch’s introduction of the concept of spin waves in 1930, magnons (the quanta of spin waves) have been extensively studied in a range of materials for spintronics, particularly for non-volatile logic-in-memory devices. Controlling magnons in conventional antiferromagnets and harnessing them in practical applications, however, remains a challenge. In this letter, we demonstrate highly efficient magnon transport in an LaFeO3/BiFeO3/LaFeO3 all-antiferromagnetic system which can be controlled electrically, making it highly desirable for energy-efficient computation. Leveraging spin-orbit-driven spin-charge transduction, we demonstrate that this material architecture permits magnon confinement in ultrathin antiferromagnets, enhancing the output voltage generated by magnon transport by several orders of magnitude, which provides a pathway to enable magnetoelectric memory and logic functionalities. Additionally, its non-volatility enables ultralow-power logic-in-memory processing, where magnonic devices can be efficiently reconfigured via electrically controlled magnon spin currents within magnetoelectric channels. © 2025, CC BY.

关键词： Antiferromagnetism

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A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation: Generalizability and Clinical Utility Beyond the ISLES Challenge

arXiv

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arXiv 2024年

作者： de la Rosa, Ezequiel Reyes, Mauricio Liew, Sook-Lei Hutton, Alexandre Wiest, Roland Kaesmacher, Johannes Hanning, Uta Hakim, Arsany Zubal, Richard Valenzuela, Waldo Robben, David Sima, Diana M. Anania, Vincenzo Brys, Arne Meakin, James A. Mickan, Anne Broocks, Gabriel Heitkamp, Christian Gao, Shengbo Liang, Kongming Zhang, Ziji Siddiquee, Md Mahfuzur Rahman Myronenko, Andriy Ashtari, Pooya Van Huffel, Sabine Jeong, Hyun-Su Yoon, Chi-Ho Kim, Chulhong Huo, Jiayu Ourselin, Sebastien Sparks, Rachel Clèrigues, Albert Oliver, Arnau Lladó, Xavier Chalcroft, Liam Pappas, Ioannis Bertels, Jeroen Heylen, Ewout Moreau, Juliette Hatami, Nima Frindel, Carole Qayyum, Abdul Mazher, Moona Puig, Domenec Lin, Shao-Chieh Juan, Chun-Jung Hu, Tianxi Boone, Lyndon Goubran, Maged Liu, Yi-Jui Wegener, Susanne Kofler, Florian Ezhov, Ivan Shit, Suprosanna Hernandez Petzsche, Moritz R. Menze, Bjoern Kirschke, Jan S. Wiestler, Benedikt Department of Quantitative Biomedicine University of Zurich Zurich Switzerland Department of Informatics Technical University Munich Germany Icometrix Leuven Belgium ARTORG Center for Biomedical Research University of Bern Bern Switzerland Department of Radiation Oncology University Hospital Bern University of Bern Switzerland University of Bern Bern Switzerland Chan Division of Occupational Science and Occupational Therapy University of Southern California Los AngelesCA United States Stevens Neuroimaging and Informatics Institute Department of Neurology Keck School of Medicine University of Southern California United States University Institute of Diagnostic and Interventional Neuroradiology Inselspital Bern Switzerland University Institute of Diagnostic and Interventional Neuroradiology University Hospital Bern Inselspital University of Bern Bern Switzerland Department of Diagnostic and Interventional neuroradiology University Medical Center Hamburg-Eppendorf Hamburg Germany Department of Medical Imaging Radboud University Medical Center Institute for Health Sciences Nijmegen Netherlands Deepwise AI Lab Beijing China Beijing University of Posts and Telecommunications Bejing China School of Computing and Augmented Intelligence Arizona State University TempeAZ United States NVIDIA Santa ClaraCA United States STADIUS Center for Dynamical Systems Signal Processing and Data Analytics KU Leuven Leuven Belgium Pohang Korea Republic of School of Biomedical Engineering & Imaging Sciences King’s College London United Kingdom Institute of Computer Vision and Robotics University of Girona Spain Wellcome Centre for Human Neuroimaging University College London London United Kingdom Laboratory of Neuro Imaging Stevens Institute for Neuroimaging and Informatics Keck School of Medicine University of Southern California Los Angeles United States KU Leuven Leuven Belgium CREATIS Université Lyon1 CNRS UMR5220 INSERM U1206 INSA-Lyon Villeurbanne696

Diffusion-weighted MRI (DWI) is essential for stroke diagnosis, treatment decisions, and prognosis. However, image and disease variability hinder the development of generalizable AI algorithms with clinical value. We address this gap by presenting a novel ensemble algorithm derived from the 2022 Ischemic Stroke Lesion Segmentation (ISLES) challenge. ISLES’22 provided 400 patient scans with ischemic stroke from various medical centers, facilitating the development of a wide range of cutting-edge segmentation algorithms by the research community. By assessing them against a hidden test set, we identified strengths, weaknesses, and potential biases. Through collaboration with leading teams, we combined top-performing algorithms into an ensemble model that overcomes the limitations of individual solutions. Our ensemble model combines the individual algorithms’ strengths and achieved superior ischemic lesion detection and segmentation accuracy (median Dice score: 0.82, median lesion-wise F1 score: 0.86) on our internal test set compared to individual algorithms. This accuracy generalized well across diverse image and disease variables. Furthermore, the model excelled in extracting clinical biomarkers like lesion types and affected vascular territories. Notably, in a Turing-like test, neuroradiologists consistently preferred the algorithm’s segmentations over manual expert efforts, highlighting increased comprehensiveness and precision. Validation using a real-world external dataset (N=1686) confirmed the model’s generalizability (median Dice score: 0.82, median lesion-wise F1 score: 0.86). The algorithm’s outputs also demonstrated strong correlations with clinical scores (admission NIHSS and 90-day mRS) on par with or exceeding expert-derived results, underlining its clinical relevance. This study offers two key findings. First, we present an ensemble algorithm that detects and segments ischemic stroke lesions on DWI across diverse scenarios on par with expert (neuro)rad

关键词： Diagnosis

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Roadmap on Deep Learning for Microscopy

arXiv

引用

arXiv 2023年

作者： Volpe, Giovanni Wählby, Carolina Tian, Lei Hecht, Michael Yakimovich, Artur Monakhova, Kristina Waller, Laura Sbalzarini, Ivo F. Metzler, Christopher A. Xie, Mingyang Zhang, Kevin Lenton, Isaac C.D. Rubinsztein-Dunlop, Halina Brunner, Daniel Bai, Bijie Ozcan, Aydogan Midtvedt, Daniel Wang, Hao Sladoje, Nataša Lindblad, Joakim Smith, Jason T. Ochoa, Marien Barroso, Margarida Intes, Xavier Qiu, Tong Yu, Li-Yu You, Sixian Liu, Yongtao Ziatdinov, Maxim A. Kalinin, Sergei V. Sheridan, Arlo Manor, Uri Nehme, Elias Goldenberg, Ofri Shechtman, Yoav Moberg, Henrik K. Langhammer, Christoph Špačková, Barbora Helgadottir, Saga Midtvedt, Benjamin Argun, Aykut Thalheim, Tobias Cichos, Frank Bo, Stefano Hubatsch, Lars Pineda, Jesus Manzo, Carlo Bachimanchi, Harshith Selander, Erik Homs-Corbera, Antoni Fränzl, Martin de Haan, Kevin Rivenson, Yair Korczak, Zofia Adiels, Caroline Beck Mijalkov, Mite Veréb, Dániel Chang, Yu-Wei Pereira, Joana B. Matuszewski, Damian Kylberg, Gustaf Sintorn, Ida-Maria Caicedo, Juan C. Cimini, Beth A. Bell, Muyinatu Lediju A. Saraiva, Bruno M. Jacquemet, Guillaume Henriques, Ricardo Ouyang, Wei Le, Trang Gómez-De-Mariscal, Estibaliz Sage, Daniel Muñoz-Barrutia, Arrate Lindqvist, Ebba Josefson Bergman, Johanna Department of Physics University of Gothenburg Gothenburg41296 Sweden Dept. IT and SciLifeLab Uppsala University Sweden Department of Electrical and Computer Engineering Boston University BostonMA02215 United States Department of Biomedical Engineering Boston University BostonMA02215 United States Görlitz Germany Department of Renal Medicine Division of Medicine University College London Royal Free Hospital Campus London United Kingdom Artificial Intelligence for Life Sciences CIC Dorset United Kingdom Roche Pharma International Informatics Roche Diagnostics GmbH Mannheim Germany Department of Electrical Engineering and Computer Sciences UC Berkeley United States Technische Universität Dresden Faculty of Computer Science Dresden Germany Max Planck Institute of Molecular Cell Biology and Genetics Center for Systems Biology Dresden Dresden Germany University of Maryland College Park United States Klosterneuburg3400 Austria School of Mathematics and Physics The University of Queensland Brisbane4072 Australia Australian Research Council Centre of Excellence for Engineered Quantum Systems The University of Queensland Brisbane4072 Australia Département d’Optique P. M. Duffieux Institut FEMTO-ST Université Franche-Comté CNRS UMR 6174 Besançon France Department of Electrical and Computer Engineering University of California Los Angeles Los AngelesCA United States Department of Information Technology Uppsala University Sweden Department of Biomedical Engineering Rensselaer Polytechnic Institute TroyNY12180 United States Elephas 1 Erdman Pl. Madison53705 United States University of Wisconsin–Madison Department of Medical Physics MadisonWI53705 United States Department of Molecular and Cellular Physiology Albany Medical College AlbanyNY12208 United States Research Laboratory of Electronics Electrical Engineering and Computer Science Massachusetts Institute of Technology BostonMA United States Center for Nanophase Materials Sciences Oak R

Through digital imaging, microscopy has evolved from primarily being a means for visual observation of life at the micro- and nano-scale, to a quantitative tool with ever-increasing resolution and throughput. Artificial intelligence, deep neural networks, and machine learning are all niche terms describing computational methods that have gained a pivotal role in microscopy-based research over the past decade. This Roadmap is written collectively by prominent researchers and encompasses selected aspects of how machine learning is applied to microscopy image data, with the aim of gaining scientific knowledge by improved image quality, automated detection, segmentation, classification and tracking of objects, and efficient merging of information from multiple imaging modalities. We aim to give the reader an overview of the key developments and an understanding of possibilities and limitations of machine learning for microscopy. It will be of interest to a wide cross-disciplinary audience in the physical sciences and life sciences. Copyright © 2023, The Authors. All rights reserved.

关键词： Image enhancement

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Three dimensions, two microscopes, one code: Automatic differentiation for X-ray nanotomography beyond the depth of focus limit

arXiv

引用

arXiv 2019年

作者： Du, Ming Nashed, Youssef S. G. Kandel, Saugat Gursoy, Doga Jacobsen, Chris Department of Materials Science Northwestern University EvanstonIL60208 United States Mathematics and Computer Science Division Argonne National Laboratory LemontIL60439 United States Applied Physics Program Northwestern University EvanstonIL60208 United States Advanced Photon Source Argonne National Laboratory ArgonneIL60439 United States Department of Physics and Astronomy Northwestern University EvanstonIL60208 United States Chemistry of Life Processes Institute Northwestern University EvanstonIL60208 United States

Conventional tomographic reconstruction algorithms assume that one has obtained pure projection images, involving no within-specimen diffraction effects nor multiple scattering. Advances in X-ray nanotomography are leading towards the violation of these assumptions, by combining the high penetration power of X-rays which enables thick specimens to be imaged, with improved spatial resolution which decreases the depth of focus of the imaging system. We describe a reconstruction method where multiple scattering and diffraction effects in thick samples are modeled by multislice propagation, and the 3D object function is retrieved through iterative optimization. We show that the same proposed method works for both full-field microscopy, and for coherent scanning techniques like ptychography. Our implementation utilizes the optimization toolbox and the automatic differentiation capability of the open-source deep learning package TensorFlow, which demonstrates a much straightforward way to solve optimization problems in computational imaging, and endows our program great flexibility and portability. Copyright © 2019, The Authors. All rights reserved.

关键词： Computational Imaging

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Formulating causal questions and principled statistical answers

arXiv

引用

arXiv 2019年

作者： Goetghebeur, Els Cessie, Saskiale Stavola, Bianca De Moodie, Erica Waernbaum, Ingeborg Department of Applied Mathematics Computer Science and Statistics Ghent University Ghent Belgium Department of Clinical Epidemiology Biomedical Data Sciences Leiden Medical Center Leiden Great Ormond Street Institute of Child Health University College London London United Kingdom Division of Biostatistics McGill University Montreal Canada Department of Statistics Uppsala University Uppsala Sweden

Although review papers on causal inference methods are now available, there is a lack of introductory overviews on what they can render and on the guiding criteria for choosing one particular method. This tutorial gives an overview in situations where an exposure of interest is set at a chosen baseline ('point exposure') and the target outcome arises at a later time point. We first phrase relevant causal questions and make a case for being specific about the possible exposure levels involved and the populations for which the question is relevant. Using the potential outcomes framework, we describe principled definitions of causal effects and of estimation approaches classified according to whether they invoke the no unmeasured confounding assumption (including outcome regression and propensity score-based methods) or an instrumental variable with added *** discuss challenges and potential pitfalls and illustrate application using a 'simulation learner', that mimics the effect of various breastfeeding interventions on a child's later development. This involves a typical simulation component with generated exposure, covariate, and outcome data that mimic those from an observational or randomised intervention study. The simulation learner further generates various (linked) exposure types with a set of possible values per observation unit, from which observed as well as potential outcome data are generated. It thus provides true values of several causal effects. R code for data generation and analysis is available on ***, where SAS and Stata code for analysis is also *** Codes 62-07 Copyright © 2019, The Authors. All rights reserved.

关键词： Inverse problems

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Learning from learning machines: A new generation of AI technology to meet the needs of science

arXiv

引用

arXiv 2021年

作者： Pion-Tonachini, Luca Bouchard, Kristofer Martin, Hector Garcia Peisert, Sean Holtz, W. Bradley Aswani, Anil Dwivedi, Dipankar Wainwright, Haruko Pilania, Ghanshyam Nachman, Benjamin Marrone, Babetta L. Falco, Nicola Prabhat Arnold, Daniel Wolf-Yadlin, Alejandro Powers, Sarah Climer, Sharlee Jackson, Quinn Carlson, Ty Sohn, Michael Zwart, Petrus Kumar, Neeraj Justice, Amy Tomlin, Claire Jacobson, Daniel Micklem, Gos Gkoutos, Georgios V. Bickel, Peter J. Cazier, Jean-Baptiste Müller, Juliane Webb-Robertson, Bobbie-Jo Stevens, Rick Anderson, Mark Kreutz-Delgado, Ken Mahoney, Michael W. Brown, James B. Pattern Computer Inc. Friday HarborWA98250 United States Biosciences Area Lawrence Berkeley National Lab BerkeleyCA94803 United States Computational Research Division Lawrence Berkeley National Lab BerkeleyCA94720 United States Helen Wils Neuroscience Institute Redwood Center for Theoretical Neuroscience Uc Berkeley BerkeleyCA94720 United States Doe Agile BioFoundry Lawrence Berkeley National Laboratory BerkeleyCA94803 United States Joint BioEnergy Institute Lawrence Berkeley National Laboratory BerkeleyCA94803 United States Bcam Basque Center for Applied Mathematics Bilbao48009 Spain Computer Science University of California Davis DavisCA95616 United States Cenic La MiradaCA90638 United States Health Informatics University of California Davis School of Medicine SacramentoCA95817 United States Berkeley Institute for Data Science University of California Berkeley BerkeleyCA94720 United States Industrial Engineering and Operations Research University of California Berkeley BerkeleyCA94720 United States Environmental & Earth Sciences Area Lawrence Berkeley National Laboratory BerkeleyCA94803 United States Nuclear Engineering University of California Berkeley BerkeleyCA94720 United States Materials Science and Technology Division Los Alamos National Laboratory Los AlamosNM87545 United States Physics Division Lawrence Berkeley National Lab BerkeleyCA94720 United States Bioscience Division Los Alamos National Laboratory Los AlamosNM87545 United States Earth and Environmental Sciences Area Lawrence Berkeley National Lab BerkeleyCA94803 United States Energy Technologies Area Lawrence Berkeley National Lab BerkeleyCA94803 United States Computing and Computational Sciences Oak Ridge National Laboratory Oak RidgeTN37831 United States Industrial & Systems Engineering The University of Tennessee KnoxvilleTN37996 United States Department of Computer Science University of Missouri-Saint Louis St. LouisMO63121 United

We outline emerging opportunities and challenges to enhance the utility of AI for scientific discovery. The distinct goals of AI for industry versus the goals of AI for science create tension between identifying patterns in data versus discovering patterns in the world from data. If we address the fundamental challenges associated with "bridging the gap" between domain-driven scientific models and data-driven AI learning machines, then we expect that these AI models can transform hypothesis generation, scientific discovery, and the scientific process itself. © 2021, CC BY.

关键词： Learning systems

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The ENUF method-ewald summation based on non-uniform fast fourier transform: Implementation, parallelization, and application

arXiv

引用

arXiv 2020年

作者： Yang, Sheng-Chun Li, Bin Zhu, You-Liang Laaksonen, Aatto Wang, Yong-Lei School of Computer Science Northeast Electric Power University Jilin132012 China School of Chemical Engineering and Technology Sun Yat-sen University Zhuhai519082 China State Key Laboratory of Polymer Physics and Chemistry Changchun Institute of Applied Chemistry Chinese Academy of Sciences Changchun130022 China Department of Materials and Environmental Chemistry Arrhenius Laboratory Stockholm University StockholmSE-10691 Sweden State Key Laboratory of Materials-Oriented and Chemical Engineering Nanjing Tech University Nanjing210009 China Centre of Advanced Research in Bionanoconjugates and Biopolymers Petru Poni Institute of Macromolecular Chemistry Aleea Grigore Ghica-Voda 41A Iasi700487 Romania Department of Engineering Sciences and Mathematics Division of Energy Science Lulea University of Technology LuleaSE-97187 Sweden

computer simulations of model systems are widely used to explore striking phenomena in promising applications spanning from physics, chemistry, biology, to materials science and engineering. The long range electrostatic interactions between charged particles constitute a prominent factor in determining structures and states of model systems. How to effciently calculate electrostatic interactions in model systems subjected to partial or full periodic boundary conditions has been a grand challenging task. In the past decades, a large variety of computational schemes have been proposed, among which the Ewald summation method is the most reliable route to accurately deal with electrostatic interactions in model systems. In addition, extensive effort has been done to improve computational effciency of the Ewald summation based methods. Representative examples are approaches based on cutoffs, reaction fields, multi-poles, multi-grids, and particle-mesh schemes. We sketched an ENUF method, an abbreviation for the Ewald summation method based on Non-Uniform fast Fourier transform technique, and have implemented this method in particlebased simulation packages to calculate electrostatic energies and forces at microand mesoscopic levels. Extensive computational studies of conformational properties of polyelectrolytes, dendrimer-membrane complexes, and ionic uids demonstrated that the ENUF method and its derivatives conserve both energy and momentum to oating point accuracy, and exhibit a computational complexity of O(N logN) with optimal physical parameters. These ENUF based methods are attractive alternatives in molecular simulations where high accuracy and effciency of simulation methods are needed to accelerate calculations of electrostatic interactions at extended spatiotemporal scales. Copyright © 2020, The Authors. All rights reserved.

关键词： Electrostatics

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