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DeePN2: A deep learning-based non-Newtonian hydrodynamic model

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arXiv 2021年

作者： Fang, Lidong Ge, Pei Zhang, Lei Weinan, E. Lei, Huan Department of Computational Mathematics Science and Engineering Michigan State University MI48824 United States School of Mathematical Sciences Institute of Natural Sciences and MOE-LSC Shanghai Jiao Tong University 800 Dongchuan Road Shanghai200240 China Center for Machine Learning Research School of Mathematical Sciences Peking University Beijing100871 China AI for Science Institute Beijing100080 China Department of Mathematics and Program in Applied and Computational Mathematics Princeton University NJ08544 United States Department of Statistics and Probability Michigan State University MI48824 United States

A long standing problem in the modeling of non-Newtonian hydrodynamics of polymeric flows is the availability of reliable and interpretable hydrodynamic models that faithfully encode the underlying micro-scale polymer dynamics. The main complication arises from the long polymer relaxation time, the complex molecular structure and heterogeneous interaction. DeePN2, a deep learning-based non-Newtonian hydrodynamic model, has been proposed and has shown some success in systematically passing the micro-scale structural mechanics information to the macro-scale hydrodynamics for suspensions with simple polymer conformation and bond potential. The model retains a multi-scaled nature by mapping the polymer configurations into a set of symmetry-preserving macro-scale features. The extended constitutive laws for these macro-scale features can be directly learned from the kinetics of their micro-scale counterparts. In this paper, we develop DeePN2 using more complex micro-structural models. We show that DeePN2 can faithfully capture the broadly overlooked viscoelastic differences arising from the specific molecular structural mechanics without human intervention. © 2021, CC BY.

关键词： Non Newtonian flow

Classification of EEG-based brain connectivity networks in schizophrenia using a multi-domain connectome convolutional neural network

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arXiv 2019年

作者： Phang, Chun-Ren Ting, Chee-Ming Noman, Fuad Ombao, Hernando School of Biomedical Engineering & Health Sciences Universiti Teknologi Malaysia Skudai Johor81310 Malaysia Statistics Program King Abdullah University of Science and Technology Thuwal23955 Saudi Arabia

Objective: We exploit altered patterns in brain functional connectivity as features for automatic discriminative analysis of neuropsychiatric patients. Deep learning methods have been introduced to functional network classification only very recently for fMRI, and the proposed architectures essentially focused on a single type of connectivity measure. Methods: We propose a deep convolutional neural network (CNN) framework for classification of electroencephalogram (EEG)-derived brain connectome in schizophrenia (SZ). To capture complementary aspects of disrupted connectivity in SZ, we explore combination of various connectivity features consisting of time and frequency-domain metrics of effective connectivity based on vector autoregressive model and partial directed coherence, and complex network measures of network topology. We design a novel multi-domain connectome CNN (MDC-CNN) based on a parallel ensemble of 1D and 2D CNNs to integrate the features from various domains and dimensions using different fusion strategies. Results: Hierarchical latent representations learned by the multiple convolutional layers from EEG connectivity reveal apparent group differences between SZ and healthy controls (HC). Results on a large resting-state EEG dataset show that the proposed CNNs significantly outperform traditional support vector machine classifiers. The MDC-CNN with combined connectivity features further improves performance over single-domain CNNs using individual features, achieving remarkable accuracy of 93.06% with a decision-level fusion. Conclusion: The proposed MDC-CNN by integrating information from diverse brain connectivity descriptors is able to accurately discriminate SZ from HC. Significance: The new framework is potentially useful for developing diagnostic tools for SZ and other disorders. Copyright © 2019, The Authors. All rights reserved.

关键词： Electroencephalography

Modeling the number of confirmed cases of COVID-19 in East Java using negative binomial regression based on least square spline estimator

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AIP Conference Proceedings 2024年第1期3083卷

作者： Arip Ramadan Nur Chamidah I. Nyoman Budiantara Student of Doctoral Study Program of Mathematics and Natural Sciences Faculty of Science and Technology Airlangga University Surabaya 60115 Indonesia. Department of Information System School of Industrial and System Engineering Telkom University Surabaya 60231 Indonesia. Department of Mathematics Faculty of Science and Technology Airlangga University Surabaya 60115 Indonesia. Research Group of Statistical Modeling in Life Science Faculty of Science and Technology Airlangga University Surabaya 60115 Indonesia. Department of Statistics Faculty of Sciences and Data Analytics Sepuluh Nopember Institute of Technology Surabaya 60111 Indonesia.

The East Java Province has experienced a significant surge in number of confirmed cases of COVID-19. This study endeavors to investigate the potential correlation between weather conditions and the incidence of number of confirmed cases of COVID-19 in East Java. To achieve this, a nonparametric regression model, specifically, the Negative Binomial Regression (NBR) model based on the least squares spline estimator, was utilized. The outcomes of the study indicate that the Mean Absolute Percentage Error (MAPE) of nonparametic regression model is 0.30. Meanwhile, the MAPE for the parametric regression model is 0.34. The results show that a nonparametric regression model approach is better than parametric regression model approach. The study establishes that the truncated spline estimator based NBR model represents the best fit, with an MLCV value of -256.71. The findings of the study suggest that a temperature less than 21.75°C is associated with a decrease of 13.28 number of confirmed cases of COVID-19 per each 1°C increase, while a temperature between 21.75°C and 25.78°C is linked to an increase of 6.85 number of confirmed cases of COVID-19 per each 1°C increase. In contrast, a temperature greater than 25.78°C is associated with a decrease of 139.42 number of confirmed cases of COVID-19 per each 1°C increase. Similarly, a wind speed less than 5.57 m/s is related to a decrease of 12.99 number of confirmed cases of COVID-19 per each 1 m/s increase, whereas a wind speed between 5.57 m/s and 8.99 m/s is associated with a decrease of 10.29 number of confirmed cases of COVID-19 per each 1 m/s increase. Furthermore, a wind speed greater than 8.99 m/s is linked to a decrease of 19.16 number of confirmed cases of COVID-19 per each 1 m/s increase. The study provides evidence that higher temperatures and wind speeds result in a slower rise in the incidence of the number of confirmed cases of COVID-19. Consequently, it is recommended that the local government remains vigilant du

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Which ads to show? Advertisement image assessment with auxiliary information via multi-step modality fusion

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arXiv 2019年

作者： Park, Kyung-Wha Lee, JungHoon Kwon, Sunyoung Ha, Jung-Woo Kim, Kyung-Min Zhang, Byoung-Tak Interdisciplinary Program in Neuroscience Seoul National University Statistics and Actuarial Science Soongsil University Clova AI Research NAVER Corp Department of Computer Science and Engineering Seoul National University Surromind Robotics

Assessing aesthetic preference is a fundamental task related to human cognition. It can also contribute to various practical applications such as image creation for online advertisements. Despite crucial influences of image quality, auxiliary information of ad images such as tags and target subjects can also determine image preference. Existing studies mainly focus on images and thus are less useful for advertisement scenarios where rich auxiliary data are available. Here we propose a modality fusion-based neural network that evaluates the aesthetic preference of images with auxiliary information. Our method fully utilizes auxiliary data by introducing multi-step modality fusion using both conditional batch normalization-based low-level and attention-based high-level fusion mechanisms, inspired by the findings from statistical analyses on real advertisement data. Our approach achieved state-of-the-art performance on the AVA dataset, a widely used dataset for aesthetic assessment. Besides, the proposed method is evaluated on large-scale real-world advertisement image data with rich auxiliary attributes, providing promising preference prediction results. Through extensive experiments, we investigate how image and auxiliary information together influence click-through rate. Copyright © 2019, The Authors. All rights reserved.

关键词： Image fusion

Artificial intelligence for modelling infectious disease epidemics

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Nature 2025年第8051期638卷 623-635页

作者： Kraemer, Moritz U. G. Tsui, Joseph L.-H. Chang, Serina Y. Lytras, Spyros Khurana, Mark P. Vanderslott, Samantha Bajaj, Sumali Scheidwasser, Neil Curran-Sebastian, Jacob Liam Semenova, Elizaveta Zhang, Mengyan Unwin, H. Juliette T. Watson, Oliver J. Mills, Cathal Dasgupta, Abhishek Ferretti, Luca Scarpino, Samuel V. Koua, Etien Morgan, Oliver Tegally, Houriiyah Paquet, Ulrich Moutsianas, Loukas Fraser, Christophe Ferguson, Neil M. Topol, Eric J. Duchêne, David A. Stadler, Tanja Kingori, Patricia Parker, Michael J. Dominici, Francesca Shadbolt, Nigel Suchard, Marc A. Ratmann, Oliver Flaxman, Seth Holmes, Edward C. Gomez-Rodriguez, Manuel Schölkopf, Bernhard Donnelly, Christl A. Pybus, Oliver G. Cauchemez, Simon Bhatt, Samir Pandemic Sciences Institute University of Oxford Oxford United Kingdom Department of Biology University of Oxford Oxford United Kingdom Department of Electrical Engineering and Computer Science University of California Berkeley Berkeley CA United States UCSF UC Berkeley Joint Program in Computational Precision Health Berkeley CA United States Division of Systems Virology Department of Microbiology and Immunology The Institute of Medical Science The University of Tokyo Tokyo Japan Section of Epidemiology Department of Public Health University of Copenhagen Copenhagen Denmark Oxford Vaccine Group University of Oxford and NIHR Oxford Biomedical Research Centre Oxford United Kingdom Department of Epidemiology and Biostatistics Imperial College London London United Kingdom Department of Computer Science University of Oxford Oxford United Kingdom School of Mathematics University of Bristol Bristol United Kingdom MRC Centre for Global Infectious Disease Analysis School of Public Health Imperial College London London United Kingdom Department of Statistics University of Oxford Oxford United Kingdom Doctoral Training Centre University of Oxford Oxford United Kingdom Institute for Experiential AI Northeastern University MA Boston Thailand Santa Fe Institute Santa Fe NM United States World Health Organization Regional Office for Africa Brazzaville Congo WHO Hub for Pandemic and Epidemic Intelligence Health Emergencies Programme World Health Organization Berlin Germany Centre for Epidemic Response and Innovation (CERI) School for Data Science and Computational Thinking Stellenbosch University Stellenbosch South Africa African Institute for Mathematical Sciences (AIMS) South Africa Muizenberg Cape Town South Africa Genomics England London United Kingdom Scripps Research La Jolla CA United States Department of Biosystems Science and Engineering ETH Zürich Basel Switzerland Swiss Institute of Bioinformatics Lausanne Switzerland The Ethox Centre Nuffield

Infectious disease threats to individual and public health are numerous, varied and frequently unexpected. Artificial intelligence (AI) and related technologies, which are already supporting human decision making in economics, medicine and social science, have the potential to transform the scope and power of infectious disease epidemiology. Here we consider the application to infectious disease modelling of AI systems that combine machine learning, computational statistics, information retrieval and data science. We first outline how recent advances in AI can accelerate breakthroughs in answering key epidemiological questions and we discuss specific AI methods that can be applied to routinely collected infectious disease surveillance data. Second, we elaborate on the social context of AI for infectious disease epidemiology, including issues such as explainability, safety, accountability and ethics. Finally, we summarize some limitations of AI applications in this field and provide recommendations for how infectious disease epidemiology can harness most effectively current and future developments in AI. © Springer Nature Limited 2025.

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Inferring a network from dynamical signals at its nodes

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arXiv 2020年

作者： Weistuch, Corey Agozzino, Luca Mujica-Parodi, Lilianne R. Dill, Ken Laufer Center for Physical and Quantitative Biology Stony Brook University Department of Applied Mathematics and Statistics Stony Brook University Department of Physics and Astronomy Stony Brook University Department of Biomedical Engineering Stony Brook University Program in Neuroscience Stony Brook University Athinoula A. Martinos Center for Biomedical Imaging Massachusetts General Hospital Harvard Medical School Department of Chemistry Stony Brook University

We give an approximate solution to the difficult inverse problem of inferring the topology of an unknown network from given time-dependent signals at the nodes. For example, we measure signals from individual neurons in the brain, and infer how they are inter-connected. We use Maximum Caliber as an inference principle. The combinatorial challenge of high-dimensional data is handled using two different approximations to the pairwise couplings. We show two proofs of principle: in a nonlinear genetic toggle switch circuit, and in a toy neural network. Copyright © 2020, The Authors. All rights reserved.

关键词： Toys

A Consensus Privacy Metrics Framework for Synthetic Data

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arXiv 2025年

作者： Pilgram, Lisa Dankar, Fida K. Drechsler, Jörg Elliot, Mark Domingo-Ferrer, Josep Francis, Paul Kantarcioglu, Murat Kong, Linglong Malin, Bradley Muralidhar, Krishnamurty Myles, Puja Prasser, Fabian Raisaro, Jean Louis Yan, Chao El Emam, Khaled School of Epidemiology and Public Health University of Ottawa ON Canada CHEO Research Institute ON Canada Department of Nephrology and Medical Intensive Care Charité – Universitätsmedizin Berlin Berlin Germany Department for Statistical Methods Institute for Employment Research Nuernberg Germany Institute for Statistics Ludwig-Maximilians-Universität Munich Germany Joint Program in Survey Methodology University of Maryland United States The Cathie Marsh Institute Research School of Social Sciences University of Manchester Manchester United Kingdom Department of Computer Engineering and Mathematics Universitat Rovira i Virgili Catalonia Tarragona Spain Max Planck Institute for Software Systems Germany Department of Computer Science Virginia Tech United States Department of Mathematical and Statistical Sciences University of Alberta Alberta Canada Department of Biomedical Informatics Vanderbilt University Medical Center NashvilleTN United States Department of Biostatistics Vanderbilt University Medical Center NashvilleTN United States Department of Computer Science Vanderbilt University NashvilleTN United States Department of Marketing and Supply Chain Management University of Oklahoma Oklahoma United States Medicines and Healthcare products Regulatory Agency London United Kingdom Berlin Institute of Health at Charité Universitätsmedizin Berlin Medical Informatics Group Berlin Germany Biomedical Data Science Center University Hospital Lausanne Lausanne Switzerland

Synthetic data generation is one approach for sharing individual-level data. However, to meet legislative requirements, it is necessary to demonstrate that the individuals’ privacy is adequately protected. There is no consolidated standard for measuring privacy in synthetic data. Through an expert panel and consensus process, we developed a framework for evaluating privacy in synthetic data. Our findings indicate that current similarity metrics fail to measure identity disclosure, and their use is discouraged. For differentially private synthetic data, a privacy budget other than close to zero was not considered interpretable. There was consensus on the importance of membership and attribute disclosure, both of which involve inferring personal information about an individual without necessarily revealing their identity. The resultant framework provides precise recommendations for metrics that address these types of disclosures effectively. Our findings further present specific opportunities for future research that can help with widespread adoption of synthetic data. © 2025, CC BY.

关键词： Differential privacy

Enhancing healthcare AI stability with edge computing and machine learning for extubation prediction

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Scientific reports 2025年第1期15卷 17858页

作者： Kuo-Yang Huang Ying-Lin Hsu Che-Liang Chung Huang-Chi Chen Ming-Hwarng Horng Ching-Hsiung Lin Ching-Sen Liu Jia-Lang Xu Division of Chest Medicine Department of Internal Medicine Changhua Christian Hospital Changhua Taiwan. Institute of Genomics and Bioinformatics National Chung Hsing University Taichung Taiwan. Ph.D. Program in Medical Biotechnology National Chung Hsing University Taichung Taiwan. Institute of Statistics National Chung Hsing University Taichung Taiwan. Department of Applied Mathematics National Chung Hsing University Taichung Taiwan. Division of Chest Medicine Department of Internal Medicine Yuanlin Christian Hospital Changhua Taiwan. Department of Computer Science and Information Engineering Chaoyang University of Technology Taichung Taiwan. jlxu@cyut.edu.tw.

The advancement of the Internet of Medical Things (IoMT) has revolutionized data acquisition and processing in critical care settings. Given the pivotal role of ventilators, accurately predicting extubation outcomes is essential to optimize patient care. This study presents an edge computing-based framework that incorporates machine learning algorithms to predict ventilator extubation success using real-time data collected directly from ventilators. The system was deployed on edge devices to enable on-site inference with minimal latency. Among the evaluated models, Random Forest and XGBoost, the latter demonstrated superior predictive performance under both holdout and tenfold cross-validation schemes. Notably, the edge-based architecture reduced server data transmissions by 83.33%, while improving system stability, resilience, and sustainability. This paper details the model evaluation and demonstrates the feasibility and efficiency of edge intelligence in ventilator weaning decision support.

关键词： Clinical decision support system Edge-computing Extubation Internet of medical things Machine learning

Epileptic Seizure Detection Based on Bandwidth Features of EEG Signals

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Procedia Computer Science 2019年 161卷 568-576页

作者： Diah P. Wulandari Nomala G.P. Putriz Yoyon K. Suprapto Santi W. Purnami Anda I. Juniani Wardah R. Islamiyah Dept. of Computer Engineering Institut Teknologi Sepuluh Nopember Surabaya Indonesia Dept. of Statistics Institut Teknologi Sepuluh Nopember Surabaya Indonesia Design and Manufacture Study Program Politeknik Perkapalan Negeri Surabaya Indonesia Dept. of Neurology Universitas Airlangga Surabaya Indonesia

Detection of seizure from EEG signals may help neurologist analyze the condition of epileptic patients. Variance in types of epileptic seizures provides challenge in recognizing the pattern of seizure signals from normal ones. In this paper, we discuss the classification of seizure and non-seizure conditions in epilepsy based on bandwidth features of EEG signals. These features were extracted using Empirical Mode Decomposition (EMD). This method decomposes signal into eight Intrinsic Mode Functions (IMFs) and its residue. The IMFs is then analyzed by Hilbert transform to obtain amplitude modulation bandwidth (BAM) and frequency modulation bandwidth (BFM). These features are fed as input to Support Vector Machine (SVM). We propose to combine the first four IMFs to extract bandwidth features and we implement this method on two data sets, public data set that contains signals from both extracranial and intracranial EEG, and data set OF Rumah Sakit Universitas Airlangga (RSUA) that contains signals from extracranial EEG only. The results showed that in general, the values of accuracy and specificity using combined features of first four IMFs outperformed those using features of single IMF, for all SVM kernel functions. The best accuracy and specificity on public data set were 97.3% and 98.25% respectively using RBF kernel, while the best sensitivity was gained using polynomial kernel based on only IMF1 bandwidth features by 99.0%. The experiments on RSUA data showed that the best accuracy was 96.5% and the best specificity was 99.38% when using Mexican Hat kernel based on combined features of first four IMFs, while the best sensitivity was 94% when using polynomial kernel based on only IMF1 bandwidth features.

关键词： EEG Empirical Mode Decomposition epilepsy machine learning