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Caco-2 Cell-Derived Biomimetic Electrochemical Biosensor for Cholera Toxin Detection

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SSRN

SSRN 2022年

作者： Kim, Yonghwan Lee, Dongtak Seo, Youngjun Jung, Hyo Gi Jang, Jae Won Park, Dongsung Kim, Insu Lee, Gyudo Hwang, Kyo Seon Kim, Seung-Hyun Lee, Sang Won Lee, Jeong Hoon Yoon, Dae Sung School of Biomedical Engineering Korea University Seoul02841 Korea Republic of Interdisciplinary Program in Precision Public Health Korea University Seoul02841 Korea Republic of Department of Clinical Pharmacology and Therapeutics College of Medicine Kyung Hee University Seoul02447 Korea Republic of Department of Biotechnology and Bioinformatics Korea University Sejong30019 Korea Republic of Interdisciplinary Graduate Program for Artificial Intelligence Smart Convergence Technology Korea University Sejong30019 Korea Republic of School of Engineering Brown University ProvidenceRI02912 United States Department of Electrical Engineering and Computer Science University of California IrvineCA92697 United States Department of Electrical Engineering Kwangwoon University Seoul01897 Korea Republic of Astrion Inc Seoul02841 Korea Republic of

Cholera is a highly contagious and lethal waterborne disease induced by an infection with Vibrio cholerae (V. cholerae) secreting cholera toxin (CTx). Cholera toxin subunit B (CTxB) from the CTx specifically binds with monosialo-tetra-hexosyl-ganglioside (GM1) found on the exterior cell membrane of an enterocyte. Owing to the pathological process of CTx, a biomimetic electrochemical biosensor (CCB) was developed by applying GM1-expressing Caco-2 cell membrane (CCM) on the electrode surface of the biosensor for CTx detection. Briefly, the electrode surface was functionalized with CCM using the vesicle fusion method. The specific binding between GM1 and CTxB on the electrode surface was verified using confocal laser scanning microscopy and atomic force microscopy. The CTxB detection performances of the CCB, including sensitivity, selectivity, and long-term stability, were determined using electrochemical impedance spectroscopy (EIS). Based on the results, the CCB had an excellent limit of detection of ~11.46 nM and a detection range spanning 100 ng/mL - 1 mg/mL. Further, the CCB had high selectivity for the CTxB compared to different interfering molecules, which are abundant constituents of intestinal fluid and fecal matter in the human body. The long-term stability of the CCBs was also verified for 3 weeks using EIS. Overall, the CCB was found to have an excellent potential for application to point-of-care and cost-effective testing for CTxB detection in developing countries. © 2022, The Authors. All rights reserved.

关键词： Electrochemical impedance spectroscopy

ARSENIC HASTENS THE ONSET OF OSTEOARTHRITIS BY TRIGGERING THE NF-κB-HIF-2α/ZIP8 SIGNALING PATHWAY VIA REACTIVE OXYGEN SPECIES

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Osteoarthritis and Cartilage 2024年 32卷 S430-S430页

作者： Gamaarachchige, Dinesh Suminda Godagama Min, Yunhui Heo, Yunji Lee, Juyeon Jung, Man-Young GHOSH, MRINMOY Son, Young-Ok Interdisciplinary Graduate Program in Advanced Convergence Technology and Science Jeju National University Jeju Korea (the Republic of) Department of Animal Biotechnology Faculty of Biotechnology Jeju National University Jeju Korea (the Republic of) Department of Biology Education Jeju National University Jeju Korea (the Republic of) Department of Biotechnology School of Bio Chemical and Processing Engineering (SBCE) Kalasalin-gam Academy of Research and Educational Krishnankoil Tamil Nadu India

Music source separation using stacked hourglass networks 19

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Music source separation using stacked hourglass networks

19th International Society for Music Information Retrieval Conference, ISMIR 2018

作者： Park, Sungheon Kim, Taehoon Lee, Kyogu Kwak, Nojun Graduate School of Convergence Science and Technology Seoul National University

ISBN: (纸本)9782954035123

In this paper, we propose a simple yet effective method for multiple music source separation using convolutional neural networks. Stacked hourglass network, which was originally designed for human pose estimation in natural images, is applied to a music source separation task. The network learns features from a spectrogram image across multiple scales and generates masks for each music source. The estimated mask is refined as it passes over stacked hourglass modules. The proposed framework is able to separate multiple music sources using a single network. Experimental results on MIR-1K and DSD100 datasets validate that the proposed method achieves competitive results comparable to the state-of-the-art methods in multiple music source separation and singing voice separation tasks. © Sungheon Park, Taehoon Kim, Kyogu Lee, Nojun Kwak.

关键词： Separation

Deep learning inter-atomic potential for thermal and phonon behaviour of silicon carbide with quantum accuracy

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arXiv 2021年

作者： Fu, Baoqin Sun, Yandong Zhang, Linfeng Wang, Han Xu, Ben Key Laboratory of Radiation Physics and Technology of the Ministry of Education Institute of Nuclear Science and Technology Sichuan University Chengdu610064 China Graduate School China Academy of Engineering Physics Beijing100193 China Program in Applied and Computational Mathematics Princeton University PrincetonNJ United States Laboratory of Computational Physics Institute of Applied Physics and Computational Mathematics Beijing100088 China

Silicon carbide (SiC) is an essential material for next generation semiconductors and components for nuclear plants. It’s applications are strongly dependent on its thermal conductivity, which is highly sensitive to microstructures. Molecular dynamics (MD) simulation is the most used methods to address thermal transportation mechanisms in devices or microstructures of nano-meters. However, the implementation of MD is limited in SiC because of lacking accurate inter-atomic potentials. In this work, using the Deep Potential (DP) methodology, we developed two inter-atomic potentials (DP-*Corresponding author. IAPs) for SiC based on two adaptively generated datasets within the density functional approximations at the local density and the generalized gradient levels. These two DP-IAPs manifest their speed with quantum accuracy in lattice dynamics simulations as well as scattering rate analysis of phonon transportation. Combining with molecular dynamics simulations, the thermal transport and mechanical properties were systematically investigated. The presented methodology and the inter-atomic potentials pave the way for a systematic approach to model heat transport in SiC related devices using multiscale modelling. Copyright © 2021, The Authors. All rights reserved.

关键词： Silicon carbide

Cubic ferromagnet and emergent U(1) symmetry on its phase boundary

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arXiv 2022年

作者： Tu, Wei-Lin Lyu, Xinliang Ghazanfari, S.R. Wu, Huan-Kuang Lee, Hyun-Yong Kawashima, Naoki Division of Display and Semiconductor Physics Korea University Sejong30019 Korea Republic of Faculty of Science and Technology Keio University 3-14-1 Hiyoshi Kohoku-ku Yokohama223-8522 Japan Institute for Solid State Physics University of Tokyo Chiba Kashiwa277-8581 Japan Department of Physics Condensed Matter Theory Center Joint Quantum Institute University of Maryland College ParkMD20742 United States Department of Applied Physics Graduate School Korea University Sejong30019 Korea Republic of Interdisciplinary Program in E·ICT-Culture-Sports Convergence Korea University Sejong30019 Korea Republic of Trans-scale Quantum Science Institute The University of Tokyo Bunkyo Tokyo113-0033 Japan

We study the simplest quantum lattice spin model for the two-dimensional (2D) cubic ferromagnet by means of mean-field analysis and tensor network calculation. While both methods give rise to similar results in detecting related phases, the 2D infinite projected entangled-pair state (iPEPS) calculation provides more accurate values of transition points. Near the phase boundary, moreover, our iPEPS results indicate that it is more difficult to pin down the orientation of magnetic easy axes, and we interpret it as the easy-axis softening. This phenomenon implies an emergence of continuous U(1) symmetry, which is indicated by the low-energy effective model and has been analytically shown by the field theory. Our model and study provide a concrete example for utilizing iPEPS near the critical region, showing that the emergent phenomenon living on the critical points can already be captured by iPEPS with a rather small bond dimension. © 2022, CC BY.

关键词： Quantum entanglement

Cold atmospheric plasma-enabled platelet vesicle incorporated iron oxide nano-propellers for thrombolysis

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Materials Today Bio 2023年 23卷 100876页

作者： Jheng, Pei-Ru Chiang, Chia-Che Kang, Jiunn-Horng Fan, Yu-Jui Wu, Kevin C.-W. Chen, Yan-Ting Liang, Jia-Wei Bolouki, Nima Lee, Jyh-Wei Hsieh, Jang-Hsing Chuang, Er-Yuan Graduate Institute of Nanomedicine and Medical Engineering Graduate Institute of Biomedical Materials and Tissue Engineering Institute of Biomedical Optomechatronics International Ph.D. Program in Biomedical Engineering School of Biomedical Engineering College of Biomedical Engineering Professional Master Program in Artificial Intelligence in Medicine College of Medicine Taipei Medical University Taipei11031 Taiwan Department of Physical Medicine and Rehabilitation Taipei Medical University Hospital Taipei Taiwan Institute of Biomedical Engineering & Nanomedicine National Health Research Institute Keyan Road Zhunan Miaoli City350 Taiwan Department of Chemical Engineering National Taiwan University No.1 Sec. 4 Roosevelt Rd Taipei10617 Taiwan Department of Plasma Physics and Technology Faculty of Science Masaryk University Brno Czech Republic Center for Plasma and Thin Film Technologies Ming Chi University of Technology New Taipei City Taiwan Department of Materials Engineering Ming Chi University of Technology New Taipei City Taiwan Cell Physiology and Molecular Image Research Center Taipei Medical University-Wan Fang Hospital Taipei11696 Taiwan

A new approach to treating vascular blockages has been developed to overcome the limitations of current thrombolytic therapies. This approach involves biosafety and multimodal plasma-derived theranostic platelet vesicle incorporating iron oxide constructed nano-propellers platformed technology that possesses fluorescent and magnetic features and manifold thrombus targeting modes. The platform is capable of being guided and visualized remotely to specifically target thrombi, and it can be activated using near-infrared phototherapy along with an actuated magnet for magnetotherapy. In a murine model of thrombus lesion, this proposed multimodal approach showed an approximately 80 % reduction in thrombus residues. Moreover, the new strategy not only improves thrombolysis but also boosts the rate of lysis, making it a promising candidate for time-sensitive thrombolytic therapy. © 2023 The Authors

关键词： Infrared devices

Dynamics of one-dimensional spin models via complex-time evolution of tensor networks

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arXiv 2025年

作者： Cha, Jeong Hyeok Lee, Hyun-Yong Kim, Heung-Sik Department of Semiconductor Physics Kangwon National University Chuncheon24341 Korea Republic of Interdisciplinary Program in Earth Environmental System Science and Engineering Kangwon National University Chuncheon24341 Korea Republic of Division of Semiconductor Physics Korea University Sejong30019 Korea Republic of Department of Applied Physics Graduate School Korea University Sejong30019 Korea Republic of Institute of Quantum Convergence Technology Kangwon National University Chuncheon24341 Korea Republic of

Studying the real-time dynamics of strongly correlated systems poses significant challenges, which have recently become more manageable thanks to advances in density matrix renormalization group (DMRG) and tensor network methods. A notable development in this area is the introduction of a complex-time evolution scheme for tensor network states, originally suggested for solving Anderson impurity model and designed to suppress the growth of entanglement under time evolution. In this study, we employ the complex-time evolution scheme to investigate the dynamics of one-dimensional spin systems, specifically the transverse-field Ising model (TFIM) and the XXZ model. Our analysis revisits the dynamic critical exponent z of the TFIM and explores the dynamical structure factor in both gapped and gapless states of the XXZ model. Importantly, the complex-time evolution reproduces the results of real-time evolution while mitigating the rapid growth of quantum entanglement typically associated with the latter. These results demonstrate that the combination of complex-time evolution and extrapolation provides a robust and efficient framework for studying the dynamics of complex quantum systems, enabling more comprehensive insights into their behavior. © 2025, CC BY.

关键词： Quantum entanglement

Low-Temperature Synthesis of Weakly Confined Carbyne inside Single-Walled Carbon nanotubes

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arXiv 2024年

作者： Zhang, Bo-Wen Qiu, Xi-Yang Ma, Yicheng Hu, Qingmei Fitó-Parera, Aina Kohata, Ikuma Feng, Ya Zheng, Yongjia Zhang, Chiyu Matsuo, Yutaka Wang, YuHuang Chiashi, Shohei Otsuka, Keigo Xiang, Rong Levshov, Dmitry I. Cambré, Sofie Wenseleers, Wim Rotkin, Slava V. Maruyama, Shigeo Department of Mechanical Engineering The University of Tokyo Tokyo113-8656 Japan State Key Laboratory of Fluid Power and Mechatronic Systems School of Mechanical Engineering Zhejiang University Hangzhou310027 China Theory and Spectroscopy of Molecules and Materials Department of Physics University of Antwerp Antwerp2610 Belgium Key Laboratory of Ocean Energy Utilization and Energy Conservation of Ministry of Education School of Energy and Power Engineering Dalian University of Technology Liaoning 116024 China Department of Chemistry and Biochemistry Chemical Physics Program Maryland Nano Center University of Maryland College ParkMD20742 United States Department of Chemical Systems Engineering Graduate School of Engineering Nagoya University Nagoya464-8603 Japan Institute of Materials Innovation Institutes for Future Society Nagoya University Nagoya464-8603 Japan Theory and Spectroscopy of Molecules and Materials Department of Chemistry University of Antwerp Antwerp2610 Belgium Nanostructured and Organic Optical and Electronic Materials Department of Physics University of Antwerp Antwerp2610 Belgium Materials Research Institute Department of Engineering Science & Mechanics The Pennsylvania State University University ParkPA16802 United States

Carbyne, a one-dimensional (1D) carbon allotrope with alternating triple and single bonds, has the highest known mechanical strength but is unstable to bending, limiting synthesis to short linear chains. Encapsulation within carbon nanotubes (CNTs) stabilizes carbyne, forming confined carbyne (CC), thus enabling further research concerning attractive 1D physics and materials properties of carbyne. While CC has been synthesized in multi-walled CNTs (MWCNTs) using the arc-discharge method and in double-walled CNTs (DWCNTs) via high-temperature high-vacuum (HTHV) method, synthesis in single-walled CNTs (SWCNTs) has been challenging due to their fragility under such conditions. In this work, we report a low-temperature method to synthesize CC inside SWCNTs (CC@SWCNT). By annealing SWCNTs containing ammonium deoxycholate (ADC) at 400°C, ADC is converted into CC without damaging the SWCNTs. Raman spectroscopy revealed a strong CC phonon (CC-mode) peak at 1860–1870 cm-1, much stronger than the SWCNT G-band peak, confirming a high fraction of CC in the resulting material. The Raman mapping result showed the uniformity of the CC-mode signal across the entire film sample, proving the high efficiency of this method in synthesizing CC in every SWCNT of appropriate size. Notably, the CC-mode peaks of CC@SWCNT (above 1860 cm-1) are higher than those reported in previous CC@CNT samples (mostly -1). This is attributed to larger SWCNT diameters (>0.95 nm) used in this study, compared to the typical 0.6–0.8 nm range. Larger diameters result in reduced confinement, allowing carbyne to closely resemble free-standing carbyne while remaining stabilized. This low-temperature synthesis of long-chain, nearly freestanding carbyne within large-diameter SWCNTs offers new opportunities for exploring 1D physics and the unique properties of carbyne for potential applications. © 2024, CC BY-NC-ND.

关键词： Single-walled carbon nanotubes (SWCN)

Efficient renal clearance of DNA tetrahedron nanopartides enables quantitative evaluation of kidney function

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nano Research 2019年第3期12卷 637-642页

作者： Dawei Jiang Hyung-Jun lm Madeline E. Boleyn Christopher G. England Dalong Ni Lei Kang Jonathan W. Engle Peng Huang Xiaoli Lan Weibo Cai Departments of Radiology and Medical Physics University of Wisconsin-Madison Madison Wisconsin 53705 USA Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging Carson International Cancer Center Laboratory of Evolutionary Theranostics School of Biomedical Engineering Health Science Center Shenzhen University Shenzhen 518060 China Graduate School of Convergence Science and Technology Seoul National University Seoul 08826 Republic of Korea Departments of Mathematics and Biology University of Wisconsin-Madison Wisconsin 53705 USA Department of Nuclear Medicine Peking University First Hospital Beijing 100034 China Department of Nuclear Medicine Union Hospital Tortgji Medical College Huazhong University of Science and TechnologyHubei Key Laboratory of Molecular Imaging No. 1277 fiefangAve Wuhan 430022 China

DNA tetrahedro n nano structure (DTN) is one of the simplest DNA nano structures and has bee n successfully applied for biose nsin g, imagi ng, and treatment of can cer. To facilitate its biomedical applications and pote ntial clinical tran slation, fun dame ntal un derstandi ng of DTN's transportation among major organs in living organisms becomes increasingly important. Here, we describe the efficient renal clearanee of DTN in healthy mice by using positron emission tomography (PET) imaging. The kidney elimination of DTN was later applied for renal function evaluation in murine models of unilateral ureteral obstruction (UUO). We further established a mathematical program of DTN to validate its changes of transportation pattern in healthy and UUO mice. We believe the establishment of pharmacokinetic profiles and mathematical model of DTN may provide in sight for future optimization of DNA nano structures for biomedical applications.

关键词： positron emission tomography (PET) imaging DNA nanotechnology DNA tetrahedron nanoparticle renal clearanee kidney dysfunction