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TaxDiff: taxonomic-guided diffusion model for protein sequence generation

Science China(Information Sciences) 2025年第4期68卷 385-386页

作者： Zongying LIN Hao LI Liuzhenghao LV Yu WANG Bin LIN Junwu ZHANG Zijun CHEN Calvin Yu-Chian CHEN Li YUAN Yonghong TIAN School of Electronic and Computer Engineering Peking University AI for Science (AI4S)-Preferred Program Peking University Shenzhen Graduate School Peng Cheng Laboratory School of Chemical Biology and Biotechnology Peking University

Protein design aims to generate protein variants with targeted biological functions, which is significant in multiple biological areas, including enzyme reaction catalysis, vaccine design, and fluorescence intensity. Protein design contains two paradigms: sequence generation and structure generation. Recently, EvoDiff [1] proposed a universal designing paradigm, combining structure and sequence generation using the diffusion framework, which improves the protein design efficiency.

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Beyond p-y method:A review of artificial intelligence approaches for predicting lateral capacity of drilled shafts in clayey soils

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Journal of Rock Mechanics and Geotechnical engineering 2024年第9期16卷 3812-3840页

作者： M.E.Al-Atroush A.E.Aboelela Ezz El-Din Hemdan Civil and Environmental Engineering Program Engineering Management DepartmentCollege of EngineeringPrince Sultan UniversityRiyadhSaudi Arabia Department of Structural Engineering Faculty of EngineeringAin Shams UniversityCairoEgypt Structure and Materials Research Lab Prince Sultan UniversityRiyadhSaudi Arabia Computer Science and Engineering Department Faculty of Electronic EngineeringMenoufia UniversityMenoufiaEgypt

In 2023,pivotal advancements in artificial intelligence(AI)have significantly *** that in mind,traditional methodologies,notably the p-y approach,have struggled to accurately model the complex,nonlinear soil-structure interactions of laterally loaded large-diameter drilled *** study undertakes a rigorous evaluation of machine learning(ML)and deep learning(DL)techniques,offering a comprehensive review of their application in addressing this geotechnical challenge.A thorough review and comparative analysis have been carried out to investigate various AI models such as artificial neural networks(ANNs),relevance vector machines(RVMs),and least squares support vector machines(LSSVMs).It was found that despite ML approaches outperforming classic methods in predicting the lateral behavior of piles,their‘black box'nature and reliance only on a data-driven approach made their results showcase statistical robustness rather than clear geotechnical insights,a fact underscored by the mathematical equations derived from these ***,the research identified a gap in the availability of drilled shaft datasets,limiting the extendibility of current findings to large-diameter *** extensive dataset,compiled from a series of lateral loading tests on free-head drilled shaft with varying properties and geometries,was introduced to bridge this *** paper concluded with a direction for future research,proposes the integration of physics-informed neural networks(PINNs),combining data-driven models with fundamental geotechnical principles to improve both the interpretability and predictive accuracy of AI applications in geotechnical engineering,marking a novel contribution to the field.

关键词： Laterally loaded drilled shaft load transfer and failure mechanisms Physics-informed neural networks(PINNs) P-y curves Artificial intelligence(AI) Dataset

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Retinal Blood Vessel Tracking and Diameter Estimation via Gaussian Process With Rider Optimization Algorithm

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IEEE Journal of Biomedical and Health Informatics 2024年第3期28卷 1173-1184页

作者： Ahmad, Nehal Lai, Kuan-Ting Tanveer, M. Indian Institute of Technology Indore Simrol Department of Mathematics Indore453552 India National Taipei University of Technology Department of International Program of Electrical Engineering and Computer Science Taipei106 Taiwan National Taipei University of Technology Department of Electronic Engineering Taipei106 Taiwan

Retinal blood vessels structure analysis is an important step in the detection of ocular diseases such as diabetic retinopathy and retinopathy of prematurity. Accurate tracking and estimation of retinal blood vessels in terms of their diameter remains a major challenge in retinal structure analysis. In this research, we develop a rider-based Gaussian approach for accurate tracking and diameter estimation of retinal blood vessels. The diameter and curvature of the blood vessel are assumed as the Gaussian processes. The features are determined for training the Gaussian process using Radon transform. The kernel hyperparameter of Gaussian processes is optimized using Rider Optimization Algorithm for evaluating the direction of the vessel. Multiple Gaussian processes are used for detecting the bifurcations and the difference in the prediction direction is quantified. The performance of the proposed Rider-based Gaussian process is evaluated with mean and standard deviation. Our method achieved high performance with the standard deviation of 0.2499 and mean average of 0.0147, which outperformed the state-of-the-art method by 6.32%. Although the proposed model outperformed the state-of-the-art method in normal blood vessels, in future research, one can include tortuous blood vessels of different retinopathy patients, which would be more challenging due to large angle variations. We used Rider-based Gaussian process for tracking blood vessels to obtain the diameter of retinal blood vessels, and the method performed well on the 'STrutred Analysis of the REtina (STARE) Database' accessed on Oct. 2020 (https://***/~ahoover/stare/). To the best of our knowledge, this experiment is one of the most recent analysis using this type of algorithm. © 2013 IEEE.

关键词： Blood vessels

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High-Throughput Independent Component Analysis Processor for Full Duplex Systems

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IEEE Journal on Selected Areas in Communications 2023年第9期41卷 2821-2832页

作者： Cheng, Jen-Hao Chang, Tien-Min Shen, Chung-An Fouda, Mohammed E. Eltawil, Ahmed M. National Taiwan University of Science and Technology Department of Electronic and Computer Engineering Taipei10607 Taiwan University of California at Irvine Electrical Engineering and Computer Science Department IrvineCA92697 United States King Abdullah University of Science and Technology Electrical and Computer Engineering Program Thuwal23955 Saudi Arabia

This paper presents the algorithm and very-large-scale integration (VLSI) architecture of a high-throughput and highly efficient independent component analysis (ICA) processor for self-interference cancellation (SIC) in in-band full-duplex (IBFD) systems. This is the first VLSI architecture reported in the literature based on the state-of-the-art entropy bound minimization (EBM) approach. A novel ICA algorithm is presented in this paper with momentum gradient descent optimization. Simulation results show that the number of iterations for the proposed algorithm is significantly reduced compared to the conventional ICA algorithms. Furthermore, a novel early-distribution estimation scheme is proposed in the designed ICA processor to compute multiple distribution functions with low latency and low complexity. The processing flow and the efficiency for the hardware utilization are specifically designed so that the processing speed is maximized with minimum employment of hardware components. The proposed ICA processor is designed and implemented based on the application-specific-integrated circuit (ASIC) flow. The post-layout estimations show that compared with the conventional EBM-based scheme, the proposed design improves the throughput and efficiency by 30x. In addition, compared to prior designs shown in the literature, the proposed ICA processor also demonstrates a significant enhancement in terms of throughput and efficiency. © 1983-2012 IEEE.

关键词： VLSI circuits

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Metasurfaces for next-generation wireless communication systems

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National Science Review 2023年第8期10卷 17-19页

作者： Younes Ra'di Nikita Nefedkin Petar Popovski Andrea Alù Department of Electrical Engineering and Computer Science Syracuse University Photonics Initiative Advanced Science Research Center City University of New York Department of Electronic Systems Aalborg University Physics Program Graduate Center City University of New York

The pace of development in the world of 5G communication systems has proven to be much more demanding than previous generations, with 5G-Advanced seemingly around the corner [1]. Extensive research is already underway to structure the next generation of wireless systems(i.e. 6G), which may potentially enable an unprecedented level of human–machine interaction [2].

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Enhancing waste sorting and recycling efficiency: robust deep learning-based approach for classification and detection

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Neural Computing and Applications 2025年第6期37卷 4567-4583页

作者： Sayem, Faizul Rakib Islam, Md. Sakib Bin Naznine, Mansura Nashbat, Mohammad Hasan-Zia, Mazhar Kunju, Ali K Ansaruddin Khandakar, Amith Ashraf, Azad Majid, Molla Ehsanul Kashem, Saad Bin Abul Chowdhury, Muhammad E. H. Department of Electrical and Electronic Engineering University of Dhaka Dhaka Bangladesh Department of Biomedical Engineering Military Institute of Science and Technology Dhaka Bangladesh Department of Computer Science & Engineering Rajshahi University of Engineering & Technology Rajshahi6204 Bangladesh Chemical Engineering Department University of Doha for Science and Technology Doha Qatar Department of Electrical Engineering Qatar University Doha2713 Qatar Computer Applications Department Academic Bridge Program Qatar Foundation Doha Qatar Department of Computing Science AFG College With the University of Aberdeen Doha Qatar

Given the severity of waste pollution as a major environmental concern, intelligent and sustainable waste management is becoming increasingly crucial in both developed and developing countries. The material composition and volume of urban solid waste are key considerations in processing, managing, and utilizing city waste. Deep learning technologies have emerged as viable solutions to address waste management issues by reducing labor costs and automating complex tasks. However, the limited number of trash image categories and the inadequacy of existing datasets have constrained the proper evaluation of machine learning model performance across a large number of waste classes. In this paper, we present robust waste image classification and object detection studies using deep learning models, utilizing 28 distinct recyclable categories of waste images comprising a total of 10,406 images. For the waste classification task, we proposed a novel dual-stream network that outperformed several state-of-the-art models, achieving an overall classification accuracy of 83.11%. Additionally, we introduced the GELAN-E (generalized efficient layer aggregation network) model for waste object detection tasks, obtaining a mean average precision (mAP50) of 63%, surpassing other state-of-the-art detection models. These advancements demonstrate significant progress in the field of intelligent waste management, paving the way for more efficient and effective solutions. © The Author(s) 2024.

关键词： Deep learning for waste management Intelligent waste management Object detection in waste management Sustainable waste processing Urban solid waste Waste image classification

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Advanced Modal Identification of Local Electromechanical Transients via the Modified Complex Morlet Wavelet Transform

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IEEE Transactions on Industry Applications 2025年

作者： Correa, Gilson Viana Nascimento, Chiara das Dores do Souza, Everton Granemann Catholic University of Pelotas Master's Program in Electronic and Computer Engineering RS Pelotas Brazil

This work introduces an algorithm for identifying frequency modes in local electromechanical transients. The algorithm is founded on the principles of the Complex Morlet Wavelet Transform, offering an optimized tool for detecting parameters such as frequency, amplitude, phase, and damping constants in non-stationary multimodal signals. To validate the effectiveness of the method, computational experiments were conducted using a synthetic bimodal signal and two real multimodal signals generated from the Power System Stabilizers of different generators at the Tucuruı Hydroelectric Power Plant in Brazil. The results demonstrate superior accuracy compared to Deterministic ARMA, PCA, and Prony's method. © 1972-2012 IEEE.

关键词： Transient analysis

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Overview of Versatile Video Coding (H.266/VVC) and Its Coding Performance Analysis

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IEIE Transactions on Smart Processing and Computing 2023年第2期12卷 122-154页

作者： Lee, Minhun Song, HyeonJu Park, Jeeyoon Jeon, Byeungwoo Kang, Jungwon Kim, Jae-Gon Lee, Yung-Lyul Kang, Je-Won Sim, Donggyu Department of Computer Engineering Kwangwoon University Seoul Korea Republic of Department of Computer Engineering Sejong University Seoul Korea Republic of Department of Electrical and Computer Engineering Sungkyunkwan University Kyunggi-do Korea Republic of Communication and Media Research Laboratory Electronics and Telecommunications Research Institute Deajeon Korea Republic of School of Electronics and Information Engineering Korea Aerospace University Kyunggi-do Korea Republic of Department of Electronic and Electrical Engineering Graduate Program in Smart Factory Ewha Womans University Seoul Korea Republic of

Versatile Video Coding (H.266/VVC) is the newest video coding standard jointly developed by the Joint Video Experts Team (JVET), which is organized by the ITU-T Video Coding Experts Group (VCEG) and the ISO/IEC Moving Picture Experts Group (MPEG). H.266/VVC provides about 40% bitrate reduction compared with High Efficiency Video Coding (H.265/HEVC) for the same visual quality. This paper introduces in detail the core structure of H.266/VVC by highlighting its features within block partitioning structure, intra/inter prediction, transform, quantization, and in-loop filtering, compared to its predecessor (H.265/HEVC). H.266/VVC yields significantly improved the coding performance, but it increased the computational complexity, particularly for the encoder side, which remains a problem to be tackled for successful commercialization in the future. This paper examined the statistical performance of H.266/VVC coding tools from the bitstreams encoded by the VVC test model (VTM12.0) encoder through rate-distortion optimization under the JVET common test conditions. In addition, the complexity and performance analyses are conducted on the block partitioning structure and group of picture structure. It is expected that an optimized H.266/VVC encoder can be designed and developed by minimizing the coding loss based on the analysis data. © 2023 Institute of electronics and Information Engineers. All rights reserved.

关键词： Image compression

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Objective Sleep Quality Measurement based on Fuzzy Logic and Wearable Device 8

Objective Sleep Quality Measurement based on Fuzzy Logic and...

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8th International Conference on computer Science and Computational Intelligence, ICCSCI 2023

作者： Wijaya, Jason A. Andersen, Pauw D. Surantha, Nico Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta11480 Indonesia Department of Electrical Electronic and Communication Engineering Tokyo City University Japan

Sleep is the natural state of relaxation for human being. Sleep quality is an essential yet frequently neglected aspect of sleep in general. Sleep quality is essential because it allows the body to restore itself and prepare for the next day. The standard method for evaluating sleep quality was subjective evaluation. Actigraphy devices, which can measure the sleep cycle, are now widely available. This study developed a method using Fuzzy Logic and an actigraphy device to measure and classify sleep quality. The fuzzy logic method was developed in several stages, which are determining the sleep quality measurement parameters, constructing the fuzzy set for each input variable, and developing the fuzzy rules. To evaluate the proposed fuzzy model, five individuals were invited to participate in the experiment and required to complete the PSQI subjective sleep questionnaire. The evaluation result shows that our proposed Fuzzy model achieves lower error compared to the existing method. © 2023 The Authors. Published by Elsevier B.V.

关键词： actigraphy artificial intelligences fuzzy logic sleep sleep quality

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A Multi-trace Surface Integral Equation Solver to Analyze Electromagnetic Field Interactions on Graphene-based Devices

A Multi-trace Surface Integral Equation Solver to Analyze El...

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2022 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting, AP-S/URSI 2022

作者： Zhao, Ran Chen, Liang Hu, Jun Bagci, Hakan Electrical and Computer Engineering Program Computer Electrical and Mathematical Science and Engineering Division Thuwal23955 Saudi Arabia School of Electronic Science and Engineering Chengdu610056 China

ISBN: (数字)9781665496582

ISBN: (纸本)9781665496582

A multi-trace surface integral equation (MT-SIE) solver is proposed to analyze electromagnetic field interactions on graphene-based devices. This solver decomposes the computation domain into an exterior subdomain (the background medium where the device resides in) and an interior subdomain that represents the device's dielectric substrate. The infinitesimally thin graphene sheet partially covers the interface between these two subdomains. On the graphene surface and the rest of this interface, resistive Robin transmission conditions (formulated for the first time in this work) and the traditional Robin transmission conditions are used to "connect"these two subdomains, respectively. In each subdomain, the electric and magnetic field equations are used as the governing equations. Various numerical examples are presented to demonstrate the accuracy and the applicability of the proposed MT-SIE solver. © 2022 IEEE.

关键词： Graphene

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