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检索条件"机构=Program of Computational Science and Engineering"
865 条 记 录,以下是101-110 订阅
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Cell2Sentence: Teaching Large Language Models the Language of Biology  41
Cell2Sentence: Teaching Large Language Models the Language o...
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41st International Conference on Machine Learning, ICML 2024
作者: Levine, Daniel Rizvi, Syed Asad Lévy, Sacha Pallikkavaliyaveetil, Nazreen Zhang, David Chen, Xingyu Ghadermarzi, Sina Wu, Ruiming Zheng, Zihe Vrkic, Ivan Zhong, Anna Raskin, Daphne Han, Insu de Oliveira Fonseca, Antonio Henrique Caro, Josue Ortega Karbasi, Amin Dhodapkar, Rahul M. van Dijk, David Department of Computer Science Yale University New HavenCT United States School of Engineering Applied Science University of Pennsylvania PhiladelphiaPA United States School of Computer and Communication Sciences Swiss Federal Institute of Technology Lausanne Lausanne Switzerland Department of Neuroscience Yale School of Medicine New HavenCT United States Wu Tsai Institute Yale University New HavenCT United States Google United States Yale Institute for Foundations of Data Science New HavenCT United States Yale School of Engineering and Applied Science New HavenCT United States Roski Eye Institute University of Southern California Los AngelesCA United States Yale School of Medicine New HavenCT United States Cardiovascular Research Center Yale School of Medicine New HavenCT United States Interdepartmental Program in Computational Biology & Bioinformatics Yale University New HavenCT United States
We introduce Cell2Sentence (C2S), a novel method to directly adapt large language models to a biological context, specifically single-cell transcriptomics. By transforming gene expression data into"cell sentences... 详细信息
来源: 评论
SRBench++: Principled Benchmarking of Symbolic Regression With Domain-Expert Interpretation
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IEEE Transactions on Evolutionary Computation 2024年 1-1页
作者: de Franca, F.O. Virgolin, M. Kommenda, M. Majumder, M.S. Cranmer, M. Espada, G. Ingelse, L. Fonseca, A. Landajuela, M. Petersen, B. Glatt, R. Mundhenk, N. Lee, C.S. Hochhalter, J.D. Randall, D.L. Kamienny, P. Zhang, H. Dick, G. Simon, A. Burlacu, B. Kasak, Jaan Machado, Meera Wilstrup, Casper Cavaz, W.G.L. Federal University of ABC Santo Andre Brazil Evolutionary Intelligence group Centrum Wiskunde and Informatica Science Park Amsterdam Netherlands University of Applied Sciences Upper Austria Hagenberg Austria Computational Health Informatics Program Boston Children’s Hospital Harvard Medical School Boston USA Center for Computational Astrophysics Flatiron Institute and Department of Astrophysical Sciences of Princeton University USA LASIGE Faculdade de Ciências Universidade de Lisboa Lisboa Portugal Computational Engineering Division Lawrence Livermore National Laboratory Livermore USA Department of Mechanical Engineering University of Utah Utah USA Meta FAIR France Victoria University of Wellington School of Engineering and Computer Science New Zealand University of otago Department of Information Science New Zealand Institut für Angewandte Physik Universität TübingenMax Planck Institute for Intelligent Systems Tübingen Germany Abzu AI Orient Plads 1 Nordhavn Denmark
Symbolic regression searches for analytic expressions that accurately describe studied phenomena. The main promise of this approach is that it may return an interpretable model that can be insightful to users, while m... 详细信息
来源: 评论
An analysis of reconstruction noise from undersampled 4D flow MRI
arXiv
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arXiv 2022年
作者: Partin, Lauren Schiavazzi, Daniele E. Long, Carlos A. Sing Department Of Applied And Computational Mathematics And Statistics University Of Notre Dame Notre DameIN United States Institute For Mathematical And Computational Engineering Institute For Biological And Medical Engineering Pontificia Universidad Católica De Chile Santiago Chile ANID - Millennium Science Initiative Program Millennium Nucleus Center For The Discovery Of Structures In Complex Data Chile ANID - Millennium Science Initiative Program Millennium Nucleus Center For Cardiovascular Magnetic Resonance Chile
Novel Magnetic Resonance (MR) imaging modalities can quantify hemodynamics but require long acquisition times, precluding its widespread use for early diagnosis of cardiovascular disease. To reduce the acquisition tim... 详细信息
来源: 评论
Efficient First-Principles Framework for Overdamped Phonon Dynamics and Anharmonic Electron-Phonon Coupling in Superionic Materials
arXiv
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arXiv 2025年
作者: Wang, Yuxuan Zacharias, Marios Zhang, Xiao Pant, Nick Even, Jacky Poudeu, Pierre F.P. Kioupakis, Emmanouil Department of Materials Science and Engineering University of Michigan Ann ArborMI48109 United States Univ Rennes INSA Rennes CNRS Institut FOTON - UMR 6082 RennesF-35000 France Applied Physics Program University of Michigan Ann ArborMI48109 United States Oden Institute for Computational Engineering and Sciences The University of Texas at Austin AustinTX78712 United States
Relying on the anharmonic special displacement method, we introduce an ab initio quasistatic polymorphous framework to describe local disorder, anharmonicity, and electron-phonon coupling in superionic conductors. Usi... 详细信息
来源: 评论
Near-Optimal Pilot Assignment in Cell-Free Massive MIMO
arXiv
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arXiv 2023年
作者: Guedes, Raphael M. de Rezende, José F. Barbosa, Valmir C. Informatics and Computer Science Department State University of Rio de Janeiro RJ Rio de Janeiro20550-900 Brazil Systems Engineering and Computer Science Program Federal University of Rio de Janeiro RJ Rio de Janeiro21941-914 Brazil Graduate Program in Computational Sciences State University of Rio de Janeiro RJ Rio de Janeiro20550-900 Brazil
Cell-free massive MIMO systems are currently being considered as potential enablers of future (6G) technologies for wireless communications. By combining distributed processing and massive MIMO, they are expected to d... 详细信息
来源: 评论
Metapopulation models imply non-Poissonian statistics of interevent times
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Physical Review Research 2022年 第1期4卷 013050-013050页
作者: Elohim Fonseca dos Reis Naoki Masuda Department of Mathematics State University of New York at Buffalo Buffalo 14260-2900 New York USA Computational and Data-Enabled Science and Engineering Program State University of New York at Buffalo Buffalo 14260-5030 New York USA Faculty of Science and Engineering Waseda University Tokyo 169-8555 Japan
Interevent times in temporal contact data from humans and animals typically obey heavy-tailed distributions, which impacts contagion and other dynamical processes on networks. We theoretically show that distributions ... 详细信息
来源: 评论
Ciwars: A Web Server for Antibiotic Resistance Surveillance Using Longitudinal Metagenomic Data
SSRN
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SSRN 2024年
作者: Emon, Muhit Islam Cheung, Yat Fei Stoll, James Rumi, Monjura Afrin Brown, Connor Choi, Joung Min Moumi, Nazifa Ahmed Ahmed, Shafayat Song, Haoqiu Sein, Justin Yao, Shunyu Khan, Ahmad Gupta, Suraj Kulkarni, Rutwik Butt, Ali Vikesland, Peter Pruden, Amy Zhang, Liqing Department of Computer Science Virginia Tech BlacksburgVA24060 United States Fralin Life Science Institute Virginia Tech BlacksburgVA24060 United States Department of Civil and Environmental Engineering Virginia Tech BlacksburgVA24060 United States The Interdisciplinary PhD Program in Genetics Bioinformatics and Computational Biology Virginia Tech BlacksburgVA24060 United States
The rise of antibiotic resistance (AR) poses substantial threats to human and animal health, food security, and economic stability. Wastewater-based surveillance (WBS) has emerged as a powerful strategy for population... 详细信息
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Dimension reduction of dynamical systems on networks with leading and non-leading eigenvectors of adjacency matrices
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Physical Review Research 2022年 第2期4卷 023257-023257页
作者: Naoki Masuda Prosenjit Kundu Department of Mathematics State University of New York at Buffalo New York 14260-2900 USA Computational and Data-Enabled Science and Engineering Program State University of New York at Buffalo Buffalo New York 14260-5030 USA
Dimension reduction techniques for dynamical systems on networks are considered to promote our understanding of the original high-dimensional dynamics. One strategy of dimension reduction is to derive a low-dimensiona... 详细信息
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Generalization is not a universal guarantee: Estimating similarity to training data with an ensemble out-of-distribution metric
arXiv
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arXiv 2025年
作者: Schreyer, W. Max Anderson, Christopher Thompson, Reid F. Computational Biology Program Oregon Health & Science University PortlandOR United States Department of Biomedical Engineering Oregon Health & Science University PortlandOR United States Portland VA Research Foundation PortlandOR United States Department of Radiation Medicine Oregon Health & Science University PortlandOR United States Department of Medical Informatics and Clinical Epidemiology Oregon Health & Science University PortlandOR United States Division of Hospital and Specialty Medicine VA Portland Healthcare System PortlandOR United States
Failure of machine learning models to generalize to new data is a core problem limiting the reliability of AI systems, partly due to the lack of simple and robust methods for comparing new data to the original trainin...
来源: 评论
Fluorescent imaging for in situ measurement of drug target engagement and cell signaling pathways
Fluorescent imaging for in situ measurement of drug target e...
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Microscopy Histopathology and Analytics, Microscopy 2020
作者: McMahon, Nathan Solanki, Allison Jones, Jocelyn Kwon, Sunjong Chang, Young-Hwan Chin, Koei Nederlof, Michel Gray, Joe Gibbs, Summer L. Department of Biomedical Engineering Computational Biology Program Oregon Health and Science University PortlandOR97201 United States Knight Cancer Institute Computational Biology Program Oregon Health and Science University PortlandOR97201 United States Center for Spatial Systems Biomedicine Computational Biology Program Oregon Health and Science University PortlandOR97201 United States Quantitative Imaging Systems PittsburghPA15238 United States
Successful targeted cancer treatment continues to elude modern medicine and its many therapeutic strategies. Herein, we propose a fluorescent imaging technique to measure drug localization and subsequent cell signalin... 详细信息
来源: 评论