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International Symposium on Grids and Clouds 2023 in conjunction with HEPiX Spring Workshop, ISGC and HEPiX 2023

作者： Suhardiman, Basuki Hermanto, Benni Rio Directorate of Information Technology Institut Teknologi Bandung Jl Ganesha 10 Bandung Indonesia Master’s Program in Computational Science Faculty of Mathematics and Natural Sciences Institut Teknologi Bandung Jl Ganesha 10 Bandung Indonesia Biomedical Engineering Department School of Electrical Engineering and Informatics Institut Teknologi Bandung Indonesia

Forest fires have been detected to occur in Indonesia since 1998. The forest fires mostly resulted from human activities in order to expand their land, especially oil palm lands. Once a land clearing is carried out, it covers areas of tens to hundreds of thousands of hectares. The peak of the forest fires occurred in 2015 when almost half of the world was affected especially by smoke from the fire. In 2011, VIIRS (Visible Infrared Imaging Radiometer Suite) was launched by NOAA (National Oceanic and Atmospheric Administration). In their collected data, there is data on Indonesia issued daily for areas in the islands of Java, Sumatra, Kalimantan, Sulawesi, and the general areas of Indonesia. The VIIRS night data shows the possibility of some burning at night. We need to identify burnings that potentially become fires, which are potentially producing smoke. It is important to observe areas where large-scale forest fires frequently occur, so the authority could do some prevention beforehand. Using existing data released per day per area, we utilize an ANN (Artificial Neural Network) to identify a potential fire. The processes start with data cleaning and processing, Neural Network creation, and finally ANN training and testing. By using the ANN prediction model with the MinMax Scaler, we choose variables Temperature, Radiant Heat Intensity, and Source Footprint. Simulations are made to show the ranges of these variables that predict the possibility of’flame’ status occurring. We conclude that the ANN method can give more accurate results than the existing classification. © Copyright owned by the author(s) under the terms of the Creative Commons.

关键词： Fires

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Early surveillance of rice bakanae disease using deep learning and hyperspectral imaging

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aBIOTECH 2024年第3期5卷 281-297页

作者： Sishi Chen Xuqi Lu Hongda Fang Anand Babu Perumal Ruyue Li Lei Feng Mengcen Wang Yufei Liu College of Biosystems Engineering and Food Science Zhejiang UniversityHangzhou 310058China State Key Laboratory of Rice Biology and Breeding Zhejiang UniversityHangzhou 310058China Computational Modeling and Nanoscale Processing Unit National Institute of Food TechnologyEntrepreneurship and Management-ThanjavurMinistry of Food Processing IndustriesThanjavur 613005India College of Environmental and Resource Sciences Zhejiang UniversityHangzhou 310058China Global Education Program for AgriScience Frontiers Graduate School of AgricultureHokkaido UniversitySapporo 060-8589Japan

Bakanae disease,caused by Fusarium fujikuroi,poses a significant threat to rice production and has been observed in most rice-growing *** disease symptoms caused by different pathogens may vary,including elongated and weak stems,slender and yellow leaves,and dwarfism,as *** disease is likely to cause necrosis of diseased seedlings,and it may cause a large area of infection in the field through the transmission of ***,early disease surveillance plays a crucial role in securing rice *** monitoring methods are both time-consuming and labor-intensive and cannot be broadly *** this study,a combination of hyperspectral imaging technology and deep learning algorithms were used to achieve in situ detection of rice seedlings infected with bakanae *** data were obtained on the 9th,15th,and 21st day after rice infection to explore the physiological and biochemical performance,which helps to deepen the research on the disease *** data were obtained over these same periods of infection,and a deep learning model,named Rice Bakanae Disease-Visual Geometry Group(RBD-VGG),was established by leveraging hyperspectral imaging technology and deep learning *** on this model,an average accuracy of 92.2%was achieved on the 21st day of *** also achieved an accuracy of 79.4%as early as the 9th *** characteristic wavelengths were extracted to increase the feasibility of using portable spectral equipment for field ***,the model offers an efficient and non-destructive surveillance methodology for monitoring bakanae disease,thereby providing an efficient avenue for disease prevention and control.

关键词： Bakanae disease Hyperspectral imaging Deep learning Early surveillance Disease monitoring

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Implementation of contact line motion based on the phase-field lattice Boltzmann method

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Physical Review E 2024年第4期109卷 045307-045307页

作者： Long Ju Zhaoli Guo Bicheng Yan Shuyu Sun Computational Transport Phenomena Laboratory (CTPL) King Abdullah University of Science and Technology (KAUST) Thuwal 23955-6900 Kingdom of Saudi Arabia Institute of Interdisciplinary Research for Mathematics and Applied Science Huazhong University of Science and Technology Wuhan 430074 China Energy Resource and Petroleum Engineering Program Physical Science and Engineering Division King Abdullah University of Science and Technology (KAUST) Thuwal 23955-6900 Kingdom of Saudi Arabia

This paper proposes a strategy to implement the free-energy-based wetting boundary condition within the phase-field lattice Boltzmann method. The greatest advantage of the proposed method is that the implementation of contact line motion can be significantly simplified while still maintaining good accuracy. For this purpose, the liquid-solid free energy is treated as a part of the chemical potential instead of the boundary condition, thus avoiding complicated interpolations with irregular geometries. Several numerical testing cases, including droplet spreading processes on the idea flat, inclined, and curved boundaries, are conducted, and the results demonstrate that the proposed method has good ability and satisfactory accuracy to simulate contact line motions.

关键词： Contact line dynamics Wetting Lattice-Boltzmann methods

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Unbiased and Multilevel Methods for a Class of Diffusions Partially Observed via Marked Point Processes

arXiv

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arXiv 2023年

作者： Alvarez, Miguel Jasra, Ajay Ruzayqat, Hamza Applied Mathematics and Computational Science Program Computer Electrical and Mathematical Sciences and Engineering Division King Abdullah University of Science and Technology Thuwal23955 Saudi Arabia

In this article we consider the filtering problem associated to partially observed diffusions, with observations following a marked point process. In the model, the data form a point process with observation times that have its intensity driven by a diffusion, with the associated marks also depending upon the diffusion process. We assume that one must resort to time-discretizing the diffusion process and develop particle and multilevel particle filters to recursively approximate the filter. In particular, we prove that our multilevel particle filter can achieve a mean square error (MSE) of O(∈2) (∈ > 0 and arbitrary) with a cost of O(∈-2.5) versus using a particle filter which has a cost of O(∈-3) to achieve the same MSE. We then show how this methodology can be extended to give unbiased (that is with no time-discretization error) estimators of the filter, which are proved to have finite variance and with high-probability have finite cost. Finally, we extend our methodology to the problem of online static-parameter estimation. Key words: Unbiased Methods, Multilevel Monte Carlo, Non-Linear Filtering, Point Processes, Parameter *** Codes 60G55, 60G35, 62M20, 62F30 © 2023, CC BY.

关键词： Diffusion

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Antithetic Multilevel Particle Filters

arXiv

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arXiv 2023年

作者： Jasra, Ajay Maama, Mohamed Ombao, Hernando Applied Mathematics and Computational Science Program United States Statistics Program Computer Electrical and Mathematical Sciences and Engineering Division King Abdullah University of Science and Technology Thuwal23955-6900 Saudi Arabia

In this paper we consider the filtering of partially observed multi-dimensional diffusion processes that are observed regularly at discrete times. This is a challenging problem which requires the use of advanced numerical schemes based upon time-discretization of the diffusion process and then the application of particle filters. Perhaps the state-of-the-art method for moderate dimensional problems is the multilevel particle filter of [12]. This is a method that combines multilevel Monte Carlo and particle filters. The approach in that article is based intrinsically upon an Euler discretization method. We develop a new particle filter based upon the antithetic truncated Milstein scheme of [10]. We show that for a class of diffusion problems, for ϵ > 0 given, that the cost to produce a mean square error (MSE) in estimation of the filter, of O(ϵ2) is O(ϵ−2 log(ϵ)2). In the case of multidimensional diffusions with non-constant diffusion coefficient, the method of [12] has a cost of O(ϵ−2.5) to achieve the same MSE. We support our theory with numerical results in several examples. Copyright © 2023, The Authors. All rights reserved.

关键词： Mean square error

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Bayesian Parameter Inference for Partially Observed Stochastic Volterra Equations

arXiv

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arXiv 2023年

作者： Jasra, Ajay Ruzayqat, Hamza Wu, Amin Applied Mathematics & Computational Science Program Computer Electrical and Mathematical Sciences and Engineering Division King Abdullah University of Science and Technology Thuwal23955 Saudi Arabia

In this article we consider Bayesian parameter inference for a type of partially observed stochastic Volterra equation (SVE). SVEs are found in many areas such as physics and mathematical finance. In the latter field they can be used to represent long memory in unobserved volatility processes. In many cases of practical interest, SVEs must be time-discretized and then parameter inference is based upon the posterior associated to this time-discretized process. Based upon recent studies on time-discretization of SVEs (e.g. [24]) we use Euler-Maruyama methods for the afore-mentioned discretization. We then show how multilevel Markov chain Monte Carlo (MCMC) methods [19] can be applied in this context. In the examples we study, we give a proof that shows that the cost to achieve a 4 mean square error (MSE) of O(ϵ2), ϵ > 0, is O(ϵ− 4/2H+1 ), where H is the Hurst parameter. If one uses a single level MCMC method then the cost is O(ϵ−2(2H+3)/ 2H+1 ) to achieve the same MSE. We illustrate these results in the context of state-space and stochastic volatility models, with the latter applied to real *** Codes 62F15, 62M20, 60J10, 60J22, 65C40 © 2023, CC BY.

关键词： Mean square error

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Density functional theory investigation of electronic structure and muon hyperfine interaction in isolated adenine and thymine

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Interactions 2024年第1期245卷 1-14页

作者： Zaharim, Wan Nurfadhilah Sulaiman, Shukri Jamaludin, Ammaina Rozak, Harison Watanabe, Isao Department of Chemical Sciences Faculty of Science and Technology Universiti Kebangsaan Malaysia Selangor Bangi43600 Malaysia Nuclear Structure Research Group RIKEN Nishina Center for Accelerator Based Science 2-1 Hirosawa Wako Saitama351-0198 Japan Physics Section School of Distance Education Universiti Sains Malaysia Pulau Pinang Minden11800 Malaysia Computational Physics Laboratory School of Distance Education Universiti Sains Malaysia Pulau Pinang Minden11800 Malaysia Innovative Global Program College of Engineering Shibaura Institute of Technology Saitama337-8570 Japan

In DFT calculation, a basis set is an important factor in determining the quality of results, especially for hyperfine interaction where changes in the local geometry and electronic structure can have a big impact. The use of extensive basis sets is always desirable and is expected to produce better results. However, for DNA molecules of more than 10 base-pairs, all-electron geometry optimization calculation using large basis sets such as 6-311++G(d,p) is prohibitively difficult even on a supercomputer. An alternative is to use smaller basis sets such as 6-31G which is used in this work. Thus, the objective of the work reported here is to determine whether 6-31G basis set is suitable to be used to study muon hyperfine interaction in short DNA molecule. It is found that in comparison with 6-311++G(d,p), 6-31G does not change the ranking of muon sites stability in isolated adenine and thymine. Furthermore, the 6-31G calculated muon HFCCs are slightly closer to the experimental values. © The Author(s), under exclusive licence to Springer Nature Switzerland AG 2024.

关键词： Electronic structure

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Unbiased Parameter Estimation for Partially Observed Diffusions

arXiv

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arXiv 2023年

作者： Awadelkarim, Elsiddig Jasra, Ajay Ruzayqat, Hamza Applied Mathematics and Computational Science Program Computer Electrical and Mathematical Sciences and Engineering Division King Abdullah University of Science and Technology Thuwal23955-6900 Saudi Arabia

In this article we consider the estimation of static parameters for partially observed diffusion process with discrete-time observations over a fixed time interval. In particular, we assume that one must time-discretize the partially observed diffusion process and work with the model with bias and consider maximizing the resulting log-likelihood. Using a novel double randomization scheme, based upon Markovian stochastic approximation we develop a new method to unbiasedly estimate the static parameters, that is, to obtain the maximum likelihood estimator with no time discretization bias. Under assumptions we prove that our estimator is unbiased and investigate the method in several numerical examples, showing that it can empirically out-perform existing unbiased *** Codes 60J22, 62M05, 65C40, 62M20 © 2023, CC BY.

关键词： Parameter estimation

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LTE/WI-FI COEXISTENCE ON A FLEXIBLE SOFTWARE DEFINED RADIO TESTBED 57

LTE/WI-FI COEXISTENCE ON A FLEXIBLE SOFTWARE DEFINED RADIO T...

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57th Annual International Telemetering Conference, ITC 2022

作者： Elahi, Mirza M. Valdez, Kevin J. Gonzalez, Virgilio Computational Science Program The University of Texas at El Paso El PasoTX79968 United States Department of Electrical and Computer Engineering The University of Texas at El Paso El PasoTX79968 United States

The rapid rise in usage of mobile devices have not shown any signs of flattening or slowing down. Some efforts in the standardization bodies are underway to define new ways to boost data rate, network capacity and lower the latency by enhancing existing 4G technologies and by incorporating new technologies in 5G. Since lower spectrum has fewer resources, the LTE of unlicensed spectrum LTE-U is being proposed to extend LTE to unlicensed spectrum. Streaming data traffic for licensed spectrum on LTE-U can improve the performance of the system significantly. In this paper LTE-U deployment by the LAA is implemented using the LBT mechanism on a flexible SDR testbed. © 2022 International Foundation for Telemetering. All rights reserved.

关键词： Testbeds

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Exploring Approaches to Answer Biomedical Questions: From Pre-processing to GPT-4 Notebook for the BioASQ Lab at CLEF 2023 24

Exploring Approaches to Answer Biomedical Questions: From Pr...

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24th Working Notes of the Conference and Labs of the Evaluation Forum, CLEF-WN 2023

作者： Kim, Hyunjae Hwang, Hyeon Lee, Chaeeun Seo, Minju Yoon, Wonjin Kang, Jaewoo Department of Computer Science and Engineering Korea University Seoul02841 Korea Republic of Computational Health Informatics Program Boston Children’s Hospital BostonMA02115 United States Harvard Medical School BostonMA02115 United States AIGEN Sciences Seoul04778 Korea Republic of

Biomedical question answering (QA) plays a crucial role in assisting researchers, healthcare professionals, and even patients in accessing and retrieving accurate and up-to-date information from the vast amount of biomedical knowledge available in literature. To enhance the efficiency of knowledge discovery and information retrieval, we investigate the efficacy of various pre-processing, model training, data augmentation, and ensemble methods and evaluate a range of advanced pre-trained models such as BioLinkBERT and GPT-4. Additionally, we explore data augmentation and ensemble methods to further improve system performance. In our participation in BioASQ Task 11b-Phase B, our systems achieved a top ranking in all four batches for the yes/no type of questions, in one out of four batches for factoid questions, and in two out of four batches for list-type questions. © 2023 Copyright for this paper by its authors.

关键词： BioASQ 11b BioLinkBERT Data Augmentation Ensemble GPT-4

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