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International Symposium on Object-Oriented Real-Time Distributed Computing

作者： Yogesh D. Barve Himanshu Neema Zhuangwei Kang Hongyang Sun Aniruddha Gokhale Thomas Roth Department of Electrical Engineering and Computer Science Vanderbilt University Nashville TN USA Smart Grid and Cyber-Physical Systems Program Office Engineering Laboratory National Institute of Standards and Technology Gaithersburg MD USA

ISBN: (数字)9781728169583

ISBN: (纸本)9781728169590

A co-simulation may comprise several heterogeneous federates with diverse spatial and temporal execution characteristics. In an iterative time-stepped simulation, a federation exhibits the Bulk Synchronous Parallel (BSP) computation paradigm in which all federates perform local operations and synchronize with their peers before proceeding to the next round of computation. In this context, the lowest performing (i.e., slowest) federate dictates the progression of the federation logical time. One challenge in co-simulation is performance profiling for individual federates and entire federations. The computational resource assignment to the federates can have a large impact on federation performance. Furthermore, a federation may comprise federates located on different physical machines as is the case for cloud and edge computing environments. As such, distributed profiling and resource assignment to the federation is a major challenge for operationalizing the co-simulation execution at scale. This paper presents the Execution Performance Profiling and Optimization (EXPPO) methodology, which addresses these challenges by using execution performance profiling at each simulation execution step and for every federate in a federation. EXPPO uses profiling to learn performance models for each federate, and uses these models in its federation resource recommendation tool to solve an optimization problem that improves the execution performance of the co-simulation. Using an experimental testbed, the efficacy of EXPPO is validated to show the benefits of performance profiling and resource assignment in improving the execution runtimes of co-simulations while also minimizing the execution cost.

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A Consensus Privacy Metrics Framework for Synthetic Data

arXiv

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arXiv 2025年

作者： Pilgram, Lisa Dankar, Fida K. Drechsler, Jörg Elliot, Mark Domingo-Ferrer, Josep Francis, Paul Kantarcioglu, Murat Kong, Linglong Malin, Bradley Muralidhar, Krishnamurty Myles, Puja Prasser, Fabian Raisaro, Jean Louis Yan, Chao El Emam, Khaled School of Epidemiology and Public Health University of Ottawa ON Canada CHEO Research Institute ON Canada Department of Nephrology and Medical Intensive Care Charité – Universitätsmedizin Berlin Berlin Germany Department for Statistical Methods Institute for Employment Research Nuernberg Germany Institute for Statistics Ludwig-Maximilians-Universität Munich Germany Joint Program in Survey Methodology University of Maryland United States The Cathie Marsh Institute Research School of Social Sciences University of Manchester Manchester United Kingdom Department of Computer Engineering and Mathematics Universitat Rovira i Virgili Catalonia Tarragona Spain Max Planck Institute for Software Systems Germany Department of Computer Science Virginia Tech United States Department of Mathematical and Statistical Sciences University of Alberta Alberta Canada Department of Biomedical Informatics Vanderbilt University Medical Center NashvilleTN United States Department of Biostatistics Vanderbilt University Medical Center NashvilleTN United States Department of Computer Science Vanderbilt University NashvilleTN United States Department of Marketing and Supply Chain Management University of Oklahoma Oklahoma United States Medicines and Healthcare products Regulatory Agency London United Kingdom Berlin Institute of Health at Charité Universitätsmedizin Berlin Medical Informatics Group Berlin Germany Biomedical Data Science Center University Hospital Lausanne Lausanne Switzerland

Synthetic data generation is one approach for sharing individual-level data. However, to meet legislative requirements, it is necessary to demonstrate that the individuals’ privacy is adequately protected. There is no consolidated standard for measuring privacy in synthetic data. Through an expert panel and consensus process, we developed a framework for evaluating privacy in synthetic data. Our findings indicate that current similarity metrics fail to measure identity disclosure, and their use is discouraged. For differentially private synthetic data, a privacy budget other than close to zero was not considered interpretable. There was consensus on the importance of membership and attribute disclosure, both of which involve inferring personal information about an individual without necessarily revealing their identity. The resultant framework provides precise recommendations for metrics that address these types of disclosures effectively. Our findings further present specific opportunities for future research that can help with widespread adoption of synthetic data. © 2025, CC BY.

关键词： Differential privacy

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Unifying femtosecond and picosecond single-pulse magnetic switching in Gd-Fe-Co

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Physical Review B 2021年第10期103卷 104422-104422页

作者： F. Jakobs T. A. Ostler C.-H. Lambert Y. Yang S. Salahuddin R. B. Wilson J. Gorchon J. Bokor U. Atxitia Dahlem Center for Complex Quantum Systems and Fachbereich Physik Freie Universität Berlin 14195 Berlin Germany Département de Physique Universitè de Liége (B5) B-4000 Liége Belgium College of Business Technology and Engineering Sheffield Hallam University Howard Street Sheffield S1 1WB United Kingdom Department of Electrical Engineering and Computer Sciences University of California Berkeley California 94720 USA Department of Materials Science and Engineering University of California Berkeley California 94720 USA Lawrence Berkeley National Laboratory 1 Cyclotron Road Berkeley California 94720 USA Department of Mechanical Engineering and Materials Science and Engineering Program University of California Riverside California 92521 USA

Many questions are still open regarding the physical mechanisms behind the magnetic switching in Gd-Fe-Co alloys by single optical pulses. Phenomenological models suggest a femtosecond scale exchange relaxation between sublattice magnetization as the driving mechanism for switching. The recent observation of thermally induced switching in Gd-Fe-Co by using both several picosecond optical laser pulse as well as electric current pulses has questioned this previous understanding. This has raised the question of whether or not the same switching mechanics are acting at the femtosecond and picosecond scales. In this work, we aim at filling this gap in the understanding of the switching mechanisms behind thermal single-pulse switching. To that end, we have studied experimentally thermal single-pulse switching in Gd-Fe-Co alloys, for a wide range of system parameters, such as composition, laser power, and pulse duration. We provide a quantitative description of the switching dynamics using atomistic spin dynamics methods with excellent agreement between the model and our experiments across a wide range of parameters and timescales, ranging from femtoseconds to picoseconds. Furthermore, we find distinct element-specific damping parameters as a key ingredient for switching with long picosecond pulses and argue that switching with pulse durations as long as 15 ps is possible due to a low damping constant of Gd. Our findings can be easily extended to speed up dynamics in other contexts where ferrimagnetic Gd-Fe-Co alloys have been already demonstrated to show fast and energy-efficient processes, e.g., domain-wall motion in a track and spin-orbit torque switching in spintronics devices.

关键词： Demagnetization Magnetic interactions Magnetic order Magnetism Spin dynamics Ultrafast magnetic effects

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Charge and Energy Transfer Dynamics of Hybridized Exciton-Polaritons in 2D Halide Perovskites

arXiv

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arXiv 2023年

作者： Anantharaman, Surendra B. Lynch, Jason Stevens, Christopher E. Munley, Christopher Li, Chentao Hou, Jin Zhang, Hao Torma, Andrew Darlington, Thomas Coen, Francis Li, Kevin Majumdar, Arka Schuck, P. James Mohite, Aditya Harutyunyan, Hayk Hendrickson, Joshua R. Jariwala, Deep Department of Electrical and Systems Engineering University of Pennsylvania PhiladelphiaPA19104 United States KBR Inc. BeavercreekOH45431 United States Air Force Research Laboratory Sensors Directorate Wright-Patterson Air Force Base OH45433 United States Department of Physics University of Washington SeattleWA98195 United States Department of Physics Emory University AtlantaGA30322 United States Department of Chemical and Biomolecular Engineering Rice University HoustonTX77005 United States Department of Materials Science and Nanoengineering Rice University HoustonTX77005 United States Applied Physics Program Smalley‐Curl Institute Rice University HoustonTX77005 United States Department of Mechanical Engineering Columbia University New YorkNY10027 United States Department of Electrical and Computer Engineering University of Washington SeattleWA98195 United States

Excitons, bound electron-hole pairs, in Two-Dimensional Hybrid Organic Inorganic Perovskites (2D HOIPs) are capable of forming hybrid light-matter states known as exciton-polaritons (E-Ps) when the excitonic medium is confined in an optical cavity. In the case of 2D HOIPs, they can self-hybridize into E-Ps at specific thicknesses of the HOIP crystals that form a resonant optical cavity with the excitons. However, the fundamental properties of these self-hybridized E-Ps in 2D HOIPs, including their role in ultrafast energy and/or charge transfer at interfaces, remain unclear. Here, we demonstrate that > 0.5 µm thick 2D HOIP crystals on Au substrates are capable of supporting multiple-orders of self-hybridized E-P modes. These E-Ps have high Q factors (> 100) and modulate the optical dispersion for the crystal to enhance sub-gap absorption and emission. Through varying excitation energy and ultrafast measurements, we also confirm energy transfer from higher energy upper E-Ps to lower energy, lower E-Ps. Finally, we also demonstrate that E-Ps are capable of charge transport and transfer at interfaces. Our findings provide new insights into charge and energy transfer in E-Ps opening new opportunities towards their manipulation for polaritonic devices. © 2023, CC BY.

关键词： Charge transfer

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Interpretable Symbolic Regression for Data science: Analysis of the 2022 Competition

arXiv

引用

arXiv 2023年

作者： de Franca, F.O. Virgolin, M. Kommenda, M. Majumder, M.S. Cranmer, M. Espada, G. Ingelse, L. Fonseca, A. Landajuela, M. Petersen, B. Glatt, R. Mundhenk, N. Lee, C.S. Hochhalter, J.D. Randall, D.L. Kamienny, P. Zhang, H. Dick, G. Simon, A. Burlacu, B. Kasak, Jaan Machado, Meera Wilstrup, Casper La Cava, W.G. Federal University of ABC Santo Andre Brazil Evolutionary Intelligence Group Centrum Wiskunde & Informatica Science Park 123 Amsterdam Netherlands Computational Health Informatics Program Boston Children's Hospital Harvard Medical School Boston United States University of Applied Sciences Upper Austria Hagenberg Austria Center for Computational Astrophysics Flatiron Institute Department of Astrophysical Sciences Princeton University United States LASIGE Faculdade de Ciências Universidade de Lisboa Lisboa Portugal Computational Engineering Division Lawrence Livermore National Laboratory Livermore United States University of Utah Department of Mechanical Engineering Utah United States Meta FAIR France Victoria University of Wellington School of Engineering and Computer Science New Zealand University of otago Department of Information Science New Zealand Institut für Angewandte Physik Universität Tübingen Max Planck Institute for Intelligent Systems Tübingen Germany Abzu AI Orient Plads 1 Nordhavn 2150 Denmark

Symbolic regression searches for analytic expressions that accurately describe studied phenomena. The main attraction of this approach is that it returns an interpretable model that can be insightful to users. Historically, the majority of algorithms for symbolic regression have been based on evolutionary algorithms. However, there has been a recent surge of new proposals that instead utilize approaches such as enumeration algorithms, mixed linear integer programming, neural networks, and Bayesian optimization. In order to assess how well these new approaches behave on a set of common challenges often faced in real-world data, we hosted a competition at the 2022 Genetic and Evolutionary Computation Conference consisting of different synthetic and real-world datasets which were blind to entrants. For the real-world track, we assessed interpretability in a realistic way by using a domain expert to judge the trustworthiness of candidate models. We present an in-depth analysis of the results obtained in this competition, discuss current challenges of symbolic regression algorithms and highlight possible improvements for future competitions. Copyright © 2023, The Authors. All rights reserved.

关键词： Machine learning

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Technical debt and agile software development practices and processes: An industry practitioner survey

arXiv

引用

arXiv 2021年

作者： Holvitie, Johannes Licorish, Sherlock A. Spínola, Rodrigo O. Hyrynsalmi, Sami MacDonell, Stephen G. Mendes, Thiago S. Buchan, Jim Leppänen, Ville Turku Centre for Computer Science Software Development Laboratory Turku Finland University of Turku Department of Information Technology Turku Finland University of Otago Department of Information Science Otago Dunedin New Zealand Salvador University Graduate Program in Systems and Computer Bahia Salvador Brazil Federal University of Bahia Fraunhofer Project Center for Software and System Engineering Salvador Brazil Tampere University of Technology Pori Campus Pori Finland Federal Institute of Bahia Information Technology Department Bahia Santo Amaro Brazil Auckland University of Technology School of Engineering Computer and Mathematical Sciences Auckland New Zealand

Context: Contemporary software development is typically conducted in dynamic, resource-scarce environments that are prone to the accumulation of technical debt. While this general phenomenon is acknowledged, what remains unknown is how technical debt specifically manifests in and affects software processes, and how the software development techniques employed accommodate or mitigate the presence of this debt. Objectives: We sought to draw on practitioner insights and experiences in order to classify the effects of agile method use on technical debt management, given the popularity and perceived success of agile methods. We explore the breadth of practitioners' knowledge about technical debt;how technical debt is manifested across the software process;and the perceived effects of common agile software development practices and processes on technical debt. In doing so, we address a research gap in technical debt knowledge and provide novel and actionable managerial recommendations. Method: We designed, tested and executed a multi-national survey questionnaire to address our objectives, receiving 184 responses from practitioners in Brazil, Finland, and New Zealand. Results: Our findings indicate that: 1) Practitioners are aware of technical debt, although, there was under utilization of the concept, 2) Technical debt commonly resides in legacy systems, however, concrete instances of technical debt are hard to conceptualize which makes it problematic to manage, 3) Queried agile practices and processes help to reduce technical debt;in particular, techniques that verify and maintain the structure and clarity of implemented artifacts (e.g., Coding standards and Refactoring) positively affect technical debt management. Conclusions: The fact that technical debt instances tend to have characteristics in common means that a systematic approach to its management is feasible. However, notwithstanding the positive effects of some agile practices on technical debt management, comp

关键词： Legacy systems

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Multimodal Whole Slide Foundation Model for Pathology

arXiv

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arXiv 2024年

作者： Ding, Tong Wagner, Sophia J. Song, Andrew H. Chen, Richard J. Lu, Ming Y. Zhang, Andrew Vaidya, Anurag J. Jaume, Guillaume Shaban, Muhammad Kim, Ahrong Williamson, Drew F.K. Chen, Bowen Almagro-Perez, Cristina Doucet, Paul Sahai, Sharifa Chen, Chengkuan Komura, Daisuke Kawabe, Akihiro Ishikawa, Shumpei Gerber, Georg Peng, Tingying Le, Long Phi Mahmood, Faisal Department of Pathology Mass General Brigham Harvard Medical School BostonMA United States Data Science Program Dana-Farber Cancer Institute BostonMA United States Cancer Program Broad Institute of Harvard and MIT CambridgeMA United States John A. Paulson School of Engineering and Applied Sciences Harvard University CambridgeMA United States Helmholtz Munich German Research Center for Environment and Health Munich Germany School of Computation Information and Technology Technical University of Munich Munich Germany Department of Electrical Engineering and Computer Science Massachusetts Institute of Technology CambridgeMA United States Harvard-MIT Division of Health Sciences and Technology Massachusetts Institute of Technology CambridgeMA United States Department of Pathology Pusan National University Busan Korea Republic of Department of Pathology and Laboratory Medicine Emory University School of Medicine AtlantaGA United States Harvard Data Science Initiative Harvard University CambridgeMA United States Department of Systems Biology Harvard Medical School BostonMA United States Department of Preventive Medicine Graduate School of Medicine The University of Tokyo Tokyo Japan Division of Pathology National Cancer Center Exploratory Oncology Research & Clinical Trial Center Chiba Japan

The field of computational pathology has been transformed with recent advances in foundation models that encode histopathology region-of-interests (ROIs) into versatile and transferable feature representations via self-supervised learning (SSL). However, translating these advancements to address complex clinical challenges at the patient and slide level remains constrained by limited clinical data in disease-specific cohorts, especially for rare clinical conditions. We propose TITAN, a multimodal whole slide foundation model pretrained using 335,645 WSIs via visual self-supervised learning and vision-language alignment with corresponding pathology reports and 423,122 synthetic captions generated from a multimodal generative AI copilot for pathology. Without any finetuning or requiring clinical labels, TITAN can extract general-purpose slide representations and generate pathology reports that generalize to resource-limited clinical scenarios such as rare disease retrieval and cancer prognosis. We evaluate TITAN on diverse clinical tasks and find that TITAN outperforms both ROI and slide foundation models across machine learning settings such as linear probing, few-shot and zero-shot classification, rare cancer retrieval and cross-modal retrieval, and pathology report generation. The model is publicly accessible at https://***/mahmoodlab/TITAN © 2024, CC BY-NC-ND.

关键词： Self-supervised learning

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Psychoacoustic calibration of loss functions for efficient end-to-end neural audio coding

arXiv

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arXiv 2020年

作者： Zhen, Kai Lee, Mi Suk Sung, Jongmo Beack, Seungkwon Kim, Minje Department of Computer Science and Cognitive Science Program Indiana University BloomingtonIN47408 United States Electronics and Telecommunications Research Institute Daejeon34129 Korea Republic of Dept. of Intelligent Systems Engineering Indiana University United States

Conventional audio coding technologies commonly leverage human perception of sound, or psychoacoustics, to reduce the bitrate while preserving the perceptual quality of the decoded audio signals. For neural audio codecs, however, the objective nature of the loss function usually leads to suboptimal sound quality as well as high run-time complexity due to the large model size. In this work, we present a psychoacoustic calibration scheme to re-define the loss functions of neural audio coding systems so that it can decode signals more perceptually similar to the reference, yet with a much lower model complexity. The proposed loss function incorporates the global masking threshold, allowing the reconstruction error that corresponds to inaudible artifacts. Experimental results show that the proposed model outperforms the baseline neural codec twice as large and consuming 23.4% more bits per second. With the proposed method, a lightweight neural codec, with only 0.9 million parameters, performs near-transparent audio coding comparable with the commercial MPEG-1 Audio Layer III codec at 112 kbps. Copyright © 2020, The Authors. All rights reserved.

关键词： Deep neural networks

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Use of the Web API as a basis for obtaining the latest data on bitcoin prices at 30 exchange places

引用

IOP Conference Series: Materials science and engineering 2021年第1期1125卷

作者： Rizky Parlika Arista Pratama Informatics Engineering Study Program Faculty of Computer Science National Development University 'Veteran' East Java Information Systems Study Program Faculty of Computer Science Raya Rungkut Madya Road Gunung Anyar Surabaya

Bitcoin has become a commodity traded by millions of traders from all over the world. This is one of the causes of fluctuating price movements. From the data we got on coinmarketcap, Bitcoin is traded on various cryptocurrency trading exchanges. And at every exchange that has a reputation, of course, has an API service to access historical data about the price movements of all the crypto commodities they have traded from the start. By using the PHP programming language and implementation of the CURL function for JSON readings, we can pull Bitcoin movement data in real time. In this paper, Bitcoin is specifically observed because it is the forerunner and the main cryptocurrency commodity traded and is a determinant of Alternative coin price movements in general. In this paper Bitcoin price monitoring is carried out at 30 reputable exchange places through API access provided by each exchange place. Furthermore, conclusions are drawn about the various variants of how to access the API from the 30 bitcoin exchange places. The program code that is displayed directly in this paper can then be used as an initial reference if you want to develop a Cryptocurrency price movement monitoring application for Bitcoin. At the end of the paper, an example of the application of Bitcoin price monitoring will be presented using a web-based application containing charts and supporting indicators as well as a telegram bot to display price depth charts.

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Enriching and Characterizing T-Cell Repertoires from 3' Barcoded Single-Cell Whole Transcriptome Amplification Products

arXiv

引用

arXiv 2022年

作者： Jivanjee, Tasneem Ibrahim, Samira Nyquist, Sarah K. James Gatter, G. Bromley, Joshua D. Jaiswal, Swati Berger, Bonnie Behar, Samuel M. Christopher Love, J. Shalek, Alex K. Institute for Medical Engineering & Science Department of Chemistry Massachusetts Institute of Technology CambridgeMA United States Koch Institute for Integrative Cancer Research Massachusetts Institute of Technology CambridgeMA United States Ragon Institute of MGH MIT and Harvard CambridgeMA United States Broad Institute of MIT and Harvard CambridgeMA United States Massachusetts Institute of Technology CambridgeMA United States Program in Computational and Systems Biology Massachusetts Institute of Technology CambridgeMA United States Computer Science and Artificial Intelligence Laboratory Massachusetts Institute of Technology CambridgeMA United States Microbiology Graduate Program Massachusetts Institute of Technology CambridgeMA02139 United States Department of Microbiology and Physiological Systems University of Massachusetts Medical School WorcesterMA United States Department of Mathematics Massachusetts Institute of Technology CambridgeMA United States Department of Chemical Engineering Massachusetts Institute of Technology CambridgeMA United States

Antigen-specific T cells play an essential role in immunoregulation and many diseases such as cancer. Characterizing the T cell receptor (TCR) sequences that encode T cell specificity is critical for elucidating the antigenic determinants of immunological diseases and designing therapeutic remedies. However, methods of obtaining single-cell TCR sequencing data are labor and cost intensive, typically requiring both cell sorting and full length single-cell RNA-sequencing (scRNA-seq). New high-throughput 3' cell-barcoding scRNA-seq methods can simplify and scale this process;however, they do not routinely capture TCR sequences during library preparation and sequencing. While 5' cell-barcoding scRNA-seq methods can be used to examine TCR repertoire at single-cell resolution, doing so requires specialized reagents which cannot be applied to samples previously processed using 3' cell-barcoding methods. Here, we outline a method for sequencing TCRα and TCRβ transcripts from samples already processed using 3' cell-barcoding scRNA-seq platforms, ensuring TCR recovery at a single-cell resolution. In short, a fraction of the 3' barcoded whole transcriptome amplification (WTA) product typically used to generate a massively parallel 3' scRNA-seq library is enriched for TCR transcripts using biotinylated probes, and further amplified using the same universal primer sequence from WTA. Primer extension using TCR V-region primers and targeted PCR amplification using a second universal primer results in a 3' barcoded single-cell CDR3-enriched library that can be sequenced with custom sequencing primers. Coupled with 3' scRNA-seq of the same WTA, this method enables simultaneous analysis of single-cell transcriptomes and TCR sequences which can help interpret inherent heterogeneity among antigen-specific T cells and salient disease biology. The method presented here can also be adapted readily to enrich and sequence other transcripts of interest from both 3' and 5' barcoded scRNA-seq

关键词： RNA

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