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The accuracy of the F statistic for structural health monitoring

AIP Conference Proceedings 2020年第1期2227卷

作者： Fergyanto E. Gunawan Benfano Soewito Nico Surantha Tuga Mauritsius Nobumasa Sekishita 1Industrial Engineering Department BINUS Graduate Program – Master of Industrial Engineering Bina Nusantara University Jakarta Indonesia 11480 2Computer Science Department BINUS Graduate Program – Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480 3Information Systems Management Department BINUS Graduate Program – Master of Information Systems Management Bina Nusantara University Jakarta Indonesia 11480 4Department of Mechanical Engineering Toyohashi University of Technology Toyohashi Aichi 441-8580 Japan

Understanding the reliability of engineering methods is crucial for its adoption and deployment. This research focuses on the reliability of the Power Spectral Density (PSD) method via the use of the F statistic for damage detection. To the author best knowledge, the method is rather classic but its realibility has not been discussed in the context of a large data size. Priory, the research anticipates that the accuracy is a function of the damage level. In this study, we evaluate 3500 cases with five levels of structural integrity, namely, healthy condition and damaged conditions with 1%, 5%, 10%, and 20% damage levels. The dataset is established via a numerical analysis of a seven degree-of-freedom system loaded with a concentrated dynamic force with random magnitude. A spring on the system is reduced in its stiffness to simulate damages. Our significant findings are the following: it is challenging for the PSD-based method to differentiate the healthy condition from the damaged conditions when the damage level is small. However, the reliability is high at 95% probability when the structural integrity has dropped by five percent.

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Work in Progress – Establishing a Master program in Cyber Physical systems: Basic Findings and Future Perspectives

Work in Progress – Establishing a Master Program in Cyber P...

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International Conference on Promising Electronic Technologies (ICPET)

作者： Isam Ishaq Rashid Jayousi Salaheddin Odeh Ezzaldeen Edwan Asmaa Shaheen Mohamed Elnaggar Ahmed Elagha Samy Salamah Christian Weber Hasan Abu Rasheed Raimund Kirner Martina Doolan Hamidreza Ahmadian Roman Obermaisser Dhiah el Diehn I. Abou-Tair Ala Khalifeh Sahel Alouneh Zaid Alhalhouli Khalid Alemerien Faiez Gargouri Bassem Bouaziz Nadia Aloui Mohammad Saleh Computer Engineering and Science Departments Al-Quds University Jerusalem Palestine Engineering Program and Computer Department Palestine Technical College - Deir El-Balah Deir El-Balah Palestine Institute of Knowledge Based Systems & Knowledge Management University of Siegen Siegen Germany University of Siegen Siegen Germany School of Engineering and Computer Science University of Hertfordshire Hatfield UK Chair of Embedded Systems University of Siegen Siegen Germany German Jordanian University Amman Jordan School of Electrical Engineering and Information Technology German Jordanian University Amman Jordan Computer and Information Technology Department Tafila Technical University Tafila Jordan Higher Institute of Computer Science and Multimedia University of Sfax Sfax Tunisia Higher Institute of Applied Sciences and Technology of Mateur University of Carthage Mateure Tunisia KTH Royal Institute of Technology Stockholm Sweden

This paper reports on the basic findings and future perspectives of a capacity building project funded by the European Union. The International Master of science on Cyber Physical systems (MS@CPS) is a collaborative project that aims to establish a master program in cyber physical systems (CPS). A consortium composed of nine partners proposed the project. Three partners are European and from Germany, UK and Sweden; while the other six partners are from the South Mediterranean region and include: Palestine, Jordan and Tunisia. The consortium is led by the University of Siegen in Germany who also manages the implementation of the work packages. CPS is an emerging engineering subject with significant economic and societal implications, which motivated the consortium to propose the establishment of a master program to offer educational and training opportunities at graduate level in the fields of CPS. In this paper, CPS as a field of study is presented with an emphasis on its importance, especially with regard to meeting local needs. A brief description of the project is presented in conjunction with the methodology for developing the courses and their learning outcomes.

关键词： computer science Internet of Things Industries Knowledge engineering Embedded systems Europe Collaboration

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3D Tortuosity: a Morphological Characterization of the Central Sulcus to Differentiate Patients with Alzheimer's Disease and Controls

3D Tortuosity: a Morphological Characterization of the Centr...

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IEEE Symposium on Nuclear science (NSS/MIC)

作者： Maria Julieta Mateos Jorge Márquez Ernesto Bribiesca Universidad Nacional Autónoma de México Graduate Program in Computer Science and Engineering Ciudad Universitaria Coyoacán CDMX México Instituto de Ciencias Aplicadas y Tecnología Universidad Nacional Autónoma de México Circuito Exterior S/N Ciudad Universitaria Mexico City Universidad Nacional Autónoma de México Institute of Research in Applied Mathematics and Systems (IIMAS) Circuito Escolar 3000 Ciudad Universitaria Coyoacán CDMX

Magnetic Resonance Images of the brain provide detailed anatomical information that allows morphological analysis of the different brain structures. The analysis of the cortical folding patterns variation is inspiring great interest, as this relates to cognitive function. The sulci are a depression in the cerebral cortex and represent ≈ 70% of the cortical surface. The sulcal width, depth and cortical thickness are the most frequent morphological descriptors applied to the sulci. In this work, the 3D tortuosity is proposed as new descriptor to capture information about the twist and turns of the sulci. 1 The 3D tortuosity of the central sulcus of both hemispheres was measured using the Minimal Interval Resonance Imaging in the Alzheimer's Disease (MIRIAD) database, for a set of high-resolution MRI of 66 subjects: 43 patients with Alzheimer Disease (AD) and 23 control subjects. As it is known AD causes significant gray matter loss which cause morphological changes in the cortical structure. It is expected for the tortuosity to capture these changes and serve as a biomarker to differentiate between populations. The result of the Wilcoxon tests show that the tortuosity values of the central sulci are significantly larger for the AD patients (p < 0.05) for the left hemisphere, which is consistent with the hypothesis. The evaluation of the proposed tortuosity measurement of the Central Sulcus as a potential biomarker was performed and the results indicate its effectiveness to extract additional anatomical information and discriminate between AD patients and Controls.

关键词： Brain Three-dimensional displays Shape Shape measurement Sociology Surface morphology Skeleton

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Democratising Knowledge Representation with BioCypher

arXiv

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arXiv 2022年

作者： Lobentanzer, Sebastian Aloy, Patrick Baumbach, Jan Bohar, Balazs Charoentong, Pornpimol Danhauser, Katharina Doğan, Tunca Dreo, Johann Dunham, Ian Fernandez-Torras, Adrià Gyori, Benjamin M. Hartung, Michael Hoyt, Charles Tapley Klein, Christoph Korcsmaros, Tamas Maier, Andreas Mann, Matthias Ochoa, David Pareja-Lorente, Elena Popp, Ferdinand Preusse, Martin Probul, Niklas Schwikowski, Benno Sen, Bünyamin Strauss, Maximilian T. Turei, Denes Ulusoy, Erva Heidrun Wodke, Judith Andrea Saez-Rodriguez, Julio Heidelberg University Faculty of Medicine Heidelberg University Hospital Institute for Computational Biomedicine Bioquant Heidelberg Germany The Barcelona Institute of Science and Technology Catalonia Barcelona Spain Catalonia Barcelona Spain Institute for Computational Systems Biology University of Hamburg Germany Earlham Institute Norwich United Kingdom Biological Research Centre Szeged Hungary Heidelberg University Im Neuenheimer Feld 267 Heidelberg69120 Germany Im Neuenheimer Feld 460 Heidelberg69120 Germany Department of Pediatrics Dr. von Hauner Children’s Hospital University Hospital LMU Munich Germany Biological Data Science Lab Department of Computer Engineering Hacettepe University Ankara Turkey Department of Bioinformatics Graduate School of Health Sciences Hacettepe University Ankara Turkey Computational Systems Biomedicine Lab Department of Computational Biology Institut Pasteur Université Paris Cité Paris France Bioinformatics and Biostatistics Hub Institut Pasteur Université Paris Cité Paris France Wellcome Genome Campus Cambridgeshire HinxtonCB10 1SD United Kingdom Open Targets Wellcome Genome Campus Cambridgeshire HinxtonCB10 1SD United Kingdom Laboratory of Systems Pharmacology Harvard Medical School Boston United States Imperial College London London United Kingdom Quadram Institute Bioscience Norwich United Kingdom Proteomics Program Novo Nordisk Foundation Centre for Protein Research University of Copenhagen Copenhagen Denmark Department of Proteomics and Signal Transduction Max Planck Institute of Biochemistry Martinsried Germany Im Neuenheimer Feld 460 Heidelberg69120 Germany Neuherberg Germany Medical Informatics Laboratory University Medicine Greifswald Germany

Standardising the representation of biomedical knowledge among all researchers is an insurmountable task, hindering the effectiveness of many computational methods. To facilitate harmonisation and interoperability despite this fundamental challenge, we propose to standardise the framework of knowledge graph creation instead. We implement this standardisation in BioCypher, a FAIR (findable, accessible, interoperable, reusable) framework to transparently build biomedical knowledge graphs while preserving provenances of the source data. Mapping the knowledge onto biomedical ontologies helps to balance the needs for harmonisation, human and machine readability, and ease of use and accessibility to nonspecialist researchers. We demonstrate the usefulness of this framework on a variety of use cases, from maintenance of task-specific knowledge stores, to interoperability between biomedical domains, to on-demand building of task-specific knowledge graphs for federated learning. BioCypher (https://***) frees up valuable developer time;we encourage further development and usage by the community. © 2022, CC BY-NC-ND.

关键词： Ontology

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Development of Heterocyclic-C61-butyric Acid Methyl Ester/ Pyrazine (HCBM-Pyrazine) acceptor material for organic solar cells applications

Development of Heterocyclic-C61-butyric Acid Methyl Ester/ P...

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IEEE Conference on Nanotechnology

作者： Muath Bani Salim Reza Nekovei Tamer Elwaie Jeyakumar Ramanujam Sustainable Energy Systems Engineering Program Texas A&M University–Kingsville Kingsville TX Electrical Engineering and Computer Science Texas A&M University–Kingsville Kingsville TX Pharmaceutical Chemistry Department Cairo University Cairo Egypt Physics of Energy Harvesting Division CSIR-National Physical Laboratory Delhi India

This paper presents a novel modification on the Phenyl-C61-butyric acid methyl ester (PCBM) for better performance as an acceptor material by introducing a Heterocyclic ring (Pyrazine) in the place of the Phenyl group of the PCBM to form a new acceptor material, Heterocyclic-C61-butyric Acid Methyl Ester/ Pyrazine (HCBM-Pyrazine). The electronic properties for the new material are obtained theoretically through the use of the Density Functional Theory (DFT) method with the help of the Gaussian 16 program. The results show that the HCBM-Pyrazine can create more voltage if used with any donor material. Besides that, it has a considerably higher electron affinity, making it a more efficient electron acceptor than the original PCBM. Furthermore, the results show that both molecules have closer absorption spectrums and reorganization energies.

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Left ventricular hypertrophy detection using electrocardiographic signal

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Scientific reports 2023年第1期13卷 2556页

作者： Cheng-Wei Liu Fu-Hsing Wu Yu-Lun Hu Ren-Hao Pan Chuen-Horng Lin Yung-Fu Chen Guo-Shiang Tseng Yung-Kuan Chan Ching-Lin Wang Division of Cardiology Department of Internal Medicine Tri-Service General Hospital Songshan Branch National Defense Medical Center Taipei Taiwan. Bachelor Degree Program of Artificial Intelligence National Taichung University of Science and Technology Taichung Taiwan. Department of Management Information Systems National Chung-Hsing University Taichung Taiwan. La Vida Tec. Co. Ltd. Taichung Taiwan. Preventive Medicine Center National Yang Ming Chiao Tung University Taipei Taiwan. Department of Information Management Tunghai University Taichung Taiwan. Department of Computer Science and Information Engineering National Taichung University of Science and Technology Taichung Taiwan. Department of Dental Technology and Materials Science Central Taiwan University of Science and Technology Taichung Taiwan. Division of Cardiology Department of Internal Medicine Taoyuan Armed Force General Hospital Hsinchu Branch Hsinchu Taiwan. Department of Management Information Systems National Chung-Hsing University Taichung Taiwan. ykchan@nchu.edu.tw. Department of Information Management National Chin-Yi University of Technology Taichung Taiwan. clwang@ncut.edu.tw.

Left ventricular hypertrophy (LVH) indicates subclinical organ damage, associating with the incidence of cardiovascular diseases. From the medical perspective, electrocardiogram (ECG) is a low-cost, non-invasive, and easily reproducible tool that is often used as a preliminary diagnosis for the detection of heart disease. Nowadays, there are many criteria for assessing LVH by ECG. These criteria usually include that voltage combination of RS peaks in multi-lead ECG must be greater than one or more thresholds for diagnosis. We developed a system for detecting LVH using ECG signals by two steps: firstly, the R-peak and S-valley amplitudes of the 12-lead ECG were extracted to automatically obtain a total of 24 features and ECG beats of each case (LVH or non-LVH) were segmented; secondly, a back propagation neural network (BPN) was trained using a dataset with these features. Echocardiography (ECHO) was used as the gold standard for diagnosing LVH. The number of LVH cases (of a Taiwanese population) identified was 173. As each ECG sequence generally included 8 to 13 cycles (heartbeats) due to differences in heart rate, etc., we identified 1466 ECG cycles of LVH patients after beat segmentation. Results showed that our BPN model for detecting LVH reached the testing accuracy, precision, sensitivity, and specificity of 0.961, 0.958, 0.966 and 0.956, respectively. Detection performances of our BPN model, on the whole, outperform 7 methods using ECG criteria and many ECG-based artificial intelligence (AI) models reported previously for detecting LVH.

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IoT-Based Architecture for Data Analytics of Arboviruses in Smart Cities

IoT-Based Architecture for Data Analytics of Arboviruses in ...

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IEEE Symposium on computers and Communications

作者： Priscylla da S. Tavares Emanuel B. Rodrigues Group of Computer Networks Software Engineering and Systems (GREat) Graduate Program in Computer Science (MDCC) Federal University of Ceará (UFC) Fortaleza Brazil

With the progress of sensor technologies, there has been an increase in the number of connected computing devices capable of collecting information and interacting with the environment in which they are inserted, forming the basis of the Internet of Things (IoT). Such devices enable the development of new applications capable of making cities more intelligent, providing improvements to society and urban infrastructure. As a result of the interaction between different applications, there is a large set of data, from which useful knowledge can be extracted. An important problem to be faced is the recurrent occurrence of arbovirus outbreaks in big cities with tropical climate. This research proposes an architecture capable of aggregating data from different types of IoT devices, and manipulating them using data analytics techniques to assist the surveillance of arbovirus outbreaks. As an example of case study, we present an exploratory analysis of climatology data and cases of arbovirus diseases in the city of Fortaleza, Ceara, Brazil, between the years of 2011 and 2017.

关键词： Internet of Things Data analytics Health care Smart city

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The application of an extracellular vesicle-based biosensor in early diagnosis and prediction of chemoresponsiveness in ovarian cancer

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Cancer Letters 2024年 581卷 216533-216533页

作者： Tsang, Benjamin K. Asare-Werehene, Meshach Hunter, Rob Gerber, Emma Reunov, Arkadiy Brine, Isaiah Chang, Chia-Yu Chang, Chia-Ching Shieh, Dar-Bin Burger, Dylan Anis, Hanan Departments of Obstetrics & Gynecology and Cellular & Molecular Medicine Centre for Infection Immunity and Inflammation Interdisciplinary School of Health Sciences University of Ottawa Ottawa ON K1N 6N5 Canada Chronic Disease Program Ottawa Hospital Research Institute The Ottawa Hospital Ottawa ON K1Y 4E9 Canada Department of Biology St. Francis Xavier University 2320 Notre Dame Avenue Antigonish NS B2G 2W5 Canada School of Electrical Engineering and Computer Science Ottawa-Carleton Institute for Biomedical Engineering University of Ottawa Ottawa ON K1N 6N5 Canada Department of Biological Science and Department of Electrophysics Technology Center for Intelligent Drug Systems and Smart Bio-devices (IDS2B) National Yang Ming Chiao Tung University Hsinchu 30068 Taiwan Institute of Basic Medical Science Institute of Oral Medicine and Department of Stomatology Advanced Optoelectronic Technology Center and Center for Micro/Nano Science and Technology National Cheng Kung University Hospital National Cheng Kung University Tainan 704 Taiwan Institute of Physics Academia Sinica Taipei 10529 Taiwan

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Data quality measures and data cleansing for research information systems

arXiv

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arXiv 2019年

作者： Azeroual, Otmane Saake, Gunter Abuosba, Mohammad Berlin10117 Germany Otto-Von-Guericke University Magdeburg Department of Computer Science Institute for Technical and Business Information Systems Database Research Group P.O. Box 4120 Magdeburg39106 Germany University of Applied Sciences Htw Berlin Study Program Computational Science and Engineering Wilhelminenhofstrasse 75a Berlin12459 Germany

The collection, transfer and integration of research information into different research information systems can result in different data errors that can have a variety of negative effects on data quality. In order to detect errors at an early stage and treat them efficiently, it is necessary to determine the clean-up measures and the new techniques of data cleansing for quality improvement in research institutions. Thereby an adequate and reliable basis for decision-making using an RIS is provided, and confidence in a given dataset increased. In this paper, possible measures and the new techniques of data cleansing for improving and increasing the data quality in research information systems will be presented and how these are to be applied to the research information. Copyright © 2019, The Authors. All rights reserved.

关键词： Standardization

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Rewriting regulatory DNA to dissect and reprogram gene expression

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Cell 2025年第12期188卷 3349-3366.e23页

作者： Martyn, Gabriella E. Montgomery, Michael T. Jones, Hank Guo, Katherine Doughty, Benjamin R. Linder, Johannes Bisht, Deepa Xia, Fan Cai, Xiangmeng S. Chen, Ziwei Cochran, Kelly Lawrence, Kathryn A. Munson, Glen Pampari, Anusri Fulco, Charles P. Sahni, Nidhi Kelley, David R. Lander, Eric S. Kundaje, Anshul Engreitz, Jesse M. Department of Genetics Stanford University School of Medicine Stanford 94305 CA United States Basic Science and Engineering Initiative Stanford Children's Health Betty Irene Moore Children's Heart Center Stanford 94305 CA United States Calico Life Sciences LLC South San Francisco 94080 CA United States Department of Genitourinary Medical Oncology Division of Cancer Medicine The University of Texas MD Anderson Cancer Center Houston 77030 TX United States Department of Genomic Medicine The University of Texas MD Anderson Cancer Center Houston 77030 TX United States Department of Epigenetics and Molecular Carcinogenesis The University of Texas MD Anderson Cancer Center Houston 77230 TX United States Department of Bioengineering Stanford University Stanford 94305 CA United States Department of Computer Science Stanford University Stanford 94305 CA United States Novo Nordisk Foundation Center for Genomic Mechanisms of Disease Broad Institute of MIT and Harvard Cambridge 02142 MA United States Gene Regulation Observatory Broad Institute of MIT and Harvard Cambridge 02142 MA United States Broad Institute of MIT and Harvard Cambridge 02142 MA United States Department of Bioinformatics and Computational Biology The University of Texas MD Anderson Cancer Center Houston 77230 TX United States Quantitative and Computational Biosciences Program Baylor College of Medicine Houston 77030 TX United States Department of Biology MIT Cambridge 02139 MA United States Department of Systems Biology Harvard Medical School Boston 02115 MA United States Stanford Cardiovascular Institute Stanford University Stanford 94305 CA United States

Regulatory DNA provides a platform for transcription factor binding to encode cell-type-specific patterns of gene expression. However, the effects and programmability of regulatory DNA sequences remain difficult to map or predict. Here, we develop variant effects from flow-sorting experiments with CRISPR targeting screens (Variant-EFFECTS) to introduce hundreds of designed edits to endogenous regulatory DNA and quantify their effects on gene expression. We systematically dissect and reprogram 3 regulatory elements for 2 genes in 2 cell types. These data reveal endogenous binding sites with effects specific to genomic context, transcription factor motifs with cell-type-specific activities, and limitations of computational models for predicting the effect sizes of variants. We identify small edits that can tune gene expression over a large dynamic range, suggesting new possibilities for prime-editing-based therapeutics targeting regulatory DNA. Variant-EFFECTS provides a generalizable tool to dissect regulatory DNA and to identify genome editing reagents that tune gene expression in an endogenous context. © 2025 Elsevier Inc.

关键词： CRISPR enhancers gene regulation high-throughput screening non-coding variants predictive models prime editing RNA FlowFISH sequence design transcription factors

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