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Author Correction: The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci

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Nature computational science 2023年第7期3卷 658页

作者： Gengjie Jia Yu Li Xue Zhong Kanix Wang Milton Pividori Rabab Alomairy Aniello Esposito Hatem Ltaief Chikashi Terao Masato Akiyama Koichi Matsuda David E Keyes Hae Kyung Im Takashi Gojobori Yoichiro Kamatani Michiaki Kubo Nancy J Cox James Evans Xin Gao Andrey Rzhetsky Shenzhen Branch Guangdong Laboratory of Lingnan Modern Agriculture Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs Agricultural Genomics Institute at Shenzhen Chinese Academy of Agricultural Sciences Shenzhen China. jiagengjie@***. Computational Bioscience Research Center King Abdullah University of Science and Technology Thuwal Saudi Arabia. Computer Science Program Computer Electrical and Mathematical Sciences and Engineering Division King Abdullah University of Science and Technology Thuwal Saudi Arabia. Department of Computer Science and Engineering The Chinese University of Hong Kong Hong Kong People's Republic of China. Department of Medicine and Vanderbilt Genetics Institute Vanderbilt University Medical Center Nashville TN US. Department of Medicine Institute of Genomics and Systems Biology Committee on Genomics Genetics and Systems Biology University of Chicago Chicago IL US. Department of Operations Business Analytics and Information Systems University of Cincinnati Cincinnati OH US. Department of Systems Pharmacology and Translational Therapeutics Perelman School of Medicine University of Pennsylvania Philadelphia PA US. Extreme Computing Research Center Computer Electrical and Mathematical Sciences and Engineering Division King Abdullah University of Science and Technology Thuwal Saudi Arabia. College of Computer Science and Engineering University of Jeddah Jeddah Saudi Arabia. HPE HPC/AI EMEA Research Laboratory Bristol UK. RIKEN Center for Integrative Medical Sciences Yokohama Japan. Clinical Research Center Shizuoka General Hospital Shizuoka Japan. Department of Applied Genetics The School of Pharmaceutical Sciences University of Shizuoka Shizuoka Japan. Department of Ophthalmology Graduate School of Medical Sciences Kyushu University Fukuoka Japan. Department of Computational Biology and Medical Sciences Graduate School of Frontier Sciences The University of Tokyo Tokyo Japan. Biological and Environmenta

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Monitoring macroplastics in aquatic and terrestrial ecosystems: Expert survey reveals visual and drone-based census as most effective techniques

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science of the Total Environment 2024年 955卷 176528页

作者： Gallitelli, L. Girard, P. Andriolo, U. Liro, M. Suaria, G. Martin, C. Lusher, A.L. Hancke, K. Blettler, M.C.M. Garcia-Garin, O. Napper, I.E. Corbari, L. Cózar, A. Morales-Caselles, C. González-Fernández, D. Gasperi, J. Giarrizzo, T. Cesarini, G. De, K. Constant, M. Koutalakis, P. Gonçalves, G. Sharma, P. Gundogdu, S. Kumar, R. Garello, N.A. Camargo, A.L.G. Topouzelis, K. Galgani, F. Royer, S.J. Zaimes, G.N. Rotta, F. Lavender, S. Nava, V. Castro-Jiménez, J. Mani, T. Crosti, R. Azevedo-Santos, V.M. Bessa, F. Tramoy, R. Costa, M.F. Corbau, C. Montanari, A. Battisti, C. Scalici, M. Department of Sciences University Roma Tre Viale Guglielmo Marconi 446 Rome00146 Italy Biosciences Institute Federal University of Mato Grosso MT Cuiabá78060-900 Brazil INESC Coimbra Department of Electrical and Computer Engineering Polo 2 Coimbra3030-290 Portugal Institute of Nature Conservation Polish Academy of Sciences al. Adama Mickiewicza 33 Kraków31–120 Poland Istituto di Scienze Marine - Consiglio Nazionale delle Ricerche CNR-ISMAR Pozzuolo di Lerici La Spezia Italy Thuwal Saudi Arabia Oslo Norway Ciudad Universitaria Santa Fe3000 Argentina Faculty of Biology Universitat de Barcelona Barcelona08028 Spain International Marine Litter Research Unit University of Plymouth Plymouth United Kingdom School of Biological and Marine Sciences University of Plymouth Plymouth United Kingdom Dipartimento di Ingegneria Università degli Studi di Palermo Palermo Italy Department of Biology University Marine Research Institute INMAR University of Cádiz and European University of the Seas SEA-EU Puerto Real Spain Univ Gustave Eiffel GERS-EE Campus Nantes France Fortaleza Brazil Corso Tonolli 50 Verbania Pallanza28922 Italy Biological Oceanography Division CSIR- National Institute of Oceanography Dona Paula Goa403004 India Univ. Lille Institut Mines-Télécom Univ. Artois Junia ULR 4515 - LGCgE Laboratoire de Génie Civil et géo-Environnement LilleF-59000 France Department of Forestry and Natural Environment Science International Hellenic University University Campus in Drama Drama66100 Greece University of Coimbra Department of Mathematics Coimbra Portugal Department of Agricultural Engineering and Technology School of Engineering and Technology Nagaland University Nagaland Dimapur India Cukurova University Department of Basic Science Adana Turkey Department of Biosystems Engineering Auburn University AuburnAL36849 United States Cuiabá Brazil Department of Marine Sciences University of Aegean Greece ECHOS D'OCEANS Corse

Anthropogenic litter, such as plastic, is investigated by the global scientific community from various fields employing diverse techniques. The goal is to assess and finally mitigate the pollutants' impacts on the natural environment. Plastic litter can accumulate in different matrices of aquatic and terrestrial ecosystems, impacting both biota and ecosystem functioning. Detection and quantification of macroplastics, and other litter, can be realized by jointly using visual census and remote sensing techniques. The primary objective of this research was to identify the most effective approach for monitoring macroplastic litter in riverine and marine environments through a comprehensive survey based on the experiences of the scientific community. Researchers involved in plastic pollution evaluated four litter occurrence and flux investigation methods (visual census, drone-based surveys, satellite imagery, and GPS/GNSS trackers) through a questionnaire. Traditional visual census and drone deployment were deemed as the most popular approaches among the 46 surveyed researchers, while satellite imagery and GPS/GNSS trackers received lower scores due to limited field validation and short performance ranges, respectively. On a scale from 0 to 5, visual census and drone-based surveys obtained 3.5 and 2.0, respectively, whereas satellite imagery and alternative solutions received scores lower than 1.2. Visual and drone censuses were used in high, medium and low-income countries, while satellite census and GPS/GNSS trackers were mostly used in high-income countries. This work provides an overview of the advantages and drawbacks of litter investigation techniques, contributing i) to the global harmonization of macroplastic litter monitoring and ii) providing a starting point for researchers and water managers approaching this topic. This work supports the selection and design of reliable and cost-effective monitoring approaches to mitigate the ambiguity in macroplastic data co

关键词： Macroinvertebrates

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Topological Unwinding in an Exciton-Polariton Condensate Array

arXiv

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arXiv 2023年

作者： Lyu, Guitao Minami, Yuki Kim, Na Young Byrnes, Tim Watanabe, Gentaro School of Physics Zhejiang Institute of Modern Physics Zhejiang University Zhejiang Hangzhou310027 China Division of Natural and Applied Sciences Duke Kunshan University Jiangsu Kunshan215300 China Faculty of Engineering Gifu University 1-1 Yanagido Gifu501-1193 Japan Institute for Quantum Computing University of Waterloo 200 University Ave. West WaterlooONN2L 3G1 Canada Department of Electrical and Computer Engineering University of Waterloo 200 University Ave. West WaterlooONN2L 3G1 Canada Waterloo Institute for Nanotechnology University of Waterloo 200 University Ave. West WaterlooONN2L 3G1 Canada New York University Shanghai NYU-ECNU Institute of Physics at NYU Shanghai Shanghai Frontiers Science Center of Artificial Intelligence and Deep Learning 567 West Yangsi Road Shanghai200126 China State Key Laboratory of Precision Spectroscopy School of Physical and Material Sciences East China Normal University Shanghai200062 China NYUAD Research Institute New York University Abu Dhabi United Arab Emirates Department of Physics New York University New YorkNY10003 United States Zhejiang Province Key Laboratory of Quantum Technology and Device Zhejiang University Zhejiang Hangzhou310027 China

The phase distribution in a Bose-Einstein condensate can realize various topological states classified by distinct winding numbers. While states with different winding numbers are topologically protected in the linear Schrödinger equation, when nonlinearities are introduced, violations of the topological protection can occur, leading to unwinding. Exciton-polariton condensates constitute a nonlinear open-dissipative system that is well suited to studying such physics. Here we show that a one-dimensional array of exciton-polariton condensates displays a spontaneous phase unwinding from a πto zero-state. We clarify that this collective mode transition is caused by the combined effect of nonlinearity and topological defects in the condensates. While the mode-switching phenomenon observed in our previous experiment was interpreted as the single-particle mode competition, we offer an alternative explanation in terms the collective phase unwinding and find its evidence by reanalyzing the experimental data. Our results open a route towards active control of the mode switching by manipulating the topological defects in prospective quantum polaritonic devices. Copyright © 2023, The Authors. All rights reserved.

关键词： Winding

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RF-Net: An end-to-end image matching network based on receptive field

arXiv

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arXiv 2019年

作者： Shen, Xuelun Wang, Cheng Li, Xin Yu, Zenglei Li, Jonathan Wen, Chenglu Cheng, Ming He, Zijian Fujian Key Laboratory of Sensing and Computing for Smart City School of Information Science and Engineering Xiamen University China School of Electrical Engineering and Computer Science Louisiana State University United States Department of Geography and Environmental Management University of Waterloo Canada

This paper proposes a new end-to-end trainable matching network based on receptive field, RF-Net, to compute sparse correspondence between images. Building end-toend trainable matching framework is desirable and challenging. The very recent approach, LF-Net, successfully embeds the entire feature extraction pipeline into a jointly trainable pipeline, and produces the state-of-the-art matching results. This paper introduces two modifications to the structure of LF-Net. First, we propose to construct receptive feature maps, which lead to more effective keypoint detection. Second, we introduce a general loss function term, neighbor mask, to facilitate training patch selection. This results in improved stability in descriptor training. We trained RF-Net on the open dataset HPatches, and compared it with other methods on multiple benchmark datasets. Experiments show that RF-Net outperforms existing state-of-the-art methods. Copyright © 2019, The Authors. All rights reserved.

关键词： Pipelines

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Advanced NOMA Assisted Semi-Grant-Free Transmission Schemes for Randomly Distributed Users

arXiv

引用

arXiv 2020年

作者： Lu, Huabing Xie, Xianzhong Shi, Zhaoyuan Lei, Hongjiang Yang, Helin Cai, Jun The Key Laboratory of Intelligent Control and Optimization for Industrial Equipment Ministry of Education Dalian University of Technology Dalian116024 China The School of Computer Science and Technology Chongqing University of Posts and Telecommunications Chongqing400065 China The Key Laboratory of Intelligent Perception and Computing of Anhui Province Anqing Normal University Anqing246011 China The School of Communication and Information Engineering Chongqing University of Posts and Telecommunications Chongqing400065 China The Department of Information and Communication Engineering School of Informatics Xiamen University Xiamen361005 China Department of Electrical and Computer Engineering Concordia University MontrealQCH3G 1M8 Canada

Non-orthogonal multiple access (NOMA) assisted semi-grant-free (SGF) transmission has recently received significant research attention due to its outstanding ability of serving grant-free (GF) users with grant-based (GB) users' spectrum, which greatly improves the spectrum efficiency and effectively relieves the massive access problem of 5G and beyond networks. In this paper, we first study the outage performance of the greedy best user scheduling SGF scheme (BU-SGF) by considering the impacts of Rayleigh fading, path loss, and random user locations. In order to tackle the admission fairness problem of the BU-SGF scheme, we propose a fair SGF scheme by applying cumulative distribution function (CDF)-based scheduling (CS-SGF), in which the GF user with the best channel relative to its own statistics will be admitted. Moreover, by employing the theories of order statistics and stochastic geometry, the outage performances of both BU-SGF and CS-SGF schemes are analyzed. Theoretical results show that both schemes can achieve full diversity orders only when the served users' data rate is capped, which severely limits the rate performance of SGF schemes. To further address this issue, we propose a distributed power control strategy to relax such data rate constraint, and derive analytical expressions of the two schemes' outage performances under this strategy. Finally, simulation results validate the fairness performance of the proposed CS-SGF scheme, the effectiveness of the power control strategy, and the accuracy of the theoretical analyses. Copyright © 2020, The Authors. All rights reserved.

关键词： Spectrum efficiency

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Ai driven heterogeneous MEC system for dynamic environment - Challenges and solutions

arXiv

引用

arXiv 2020年

作者： Jiang, Feibo Wang, Kezhi Dong, Li Pan, Cunhua Xu, Wei Yang, Kun Hunan Provincial Key Laboratory of Intelligent Computing and Language Information Processing Hunan Normal University Changsha China department of Computer and Information Sciences Northumbria University United Kingdom Key Laboratory of Hunan Province for New Retail Virtual Reality Technology Hunan University of Commerce Changsha China School of Electronic Engineering and Computer Science Queen Mary University of London LondonE1 4NS United Kingdom NCRL Southeast University Nanjing China School of Computer Sciences and Electrical Engineering University of Essex ColchesterCO4 3SQ United Kingdom University of Electronic Science and Technology of China Chengdu China

—By taking full advantage of computing, Communication and Caching (3C) resources at the network edge, Mobile Edge computing (MEC) is envisioned as one of the key enablers for the next generation network and services. However, current fixed-location MEC architecture may not be able to make real-time decision in dynamic environment, especially in large-scale scenarios. To address this issue, in this paper, a Heterogeneous MEC (H-MEC) architecture is proposed, which is composed of fixed unit, i.e., Ground Stations (GSs) as well as moving nodes, i.e., Ground Vehicles (GVs) and Unmanned Aerial Vehicles (UAVs), all with 3C resource enabled. The key challenges in H-MEC, e.g., mobile edge node management, real-time decision making, user association and resource allocation along with the possible Artificial Intelligence (AI)-based solutions are discussed in this paper. In addition, an AI-based joint Resource schEduling (ARE) framework is proposed, with simulation results shown to verify the efficiency of our proposed framework. Copyright © 2020, The Authors. All rights reserved.

关键词： Deep neural networks

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Perspectives on adaptive dynamical systems

arXiv

引用

arXiv 2023年

作者： Sawicki, Jakub Berner, Rico Loos, Sarah A.M. Anvari, Mehrnaz Bader, Rolf Barfuss, Wolfram Botta, Nicola Brede, Nuria Franović, Igor Gauthier, Daniel J. Goldt, Sebastian Hajizadeh, Aida Hövel, Philipp Karin, Omer Lorenz-Spreen, Philipp Miehl, Christoph Mölter, Jan Olmi, Simona Schöll, Eckehard Seif, Alireza Tass, Peter A. Volpe, Giovanni Yanchuk, Serhiy Kurths, Jürgen Potsdam Institute for Climate Impact Research Telegrafenberg Potsdam14473 Germany Fachhochschule Nordwestschweiz FHNW Leonhardsstrasse 6 Basel4009 Switzerland Department of Physics Humboldt-Universität zu Berlin Newtonstraße 15 Berlin12489 Germany DAMTP University of Cambridge Wilberforce Road CambridgeCB3 0WA United Kingdom Fraunhofer Institute for Algorithms and Scientific Computing Schloss Birlinghoven Sankt-Augustin53757 Germany Institute of Systematic Musicology University of Hamburg Germany Transdisciplinary Research Area: Sustainable Futures University of Bonn Bonn53113 Germany University of Bonn Bonn53113 Germany Department of Computer Science and Engineering Chalmers University of Technology Göteborg412 96 Sweden Department of Computer Science University of Potsdam An der Bahn 2 Potsdam14476 Germany Scientific Computing Laboratory Center for the Study of Complex Systems Institute of Physics Belgrade University of Belgrade Pregrevica 118 Belgrade11080 Serbia The Ohio State University Department of Physics and Electrical and Computer Engineering 191 West Woodruff Ave ColumbusOH43210 United States ResCon Technologies LLC 1275 Kinnear Rd. Suite 239 ColumbusOH43212 United States Trieste Italy Research Group Comparative Neuroscience Leibniz Institute for Neurobiology Magdeburg Germany Theoretical Physics Saarland University Saarbrücken66123 Germany Center for Biophysics Saarland University Saarbrücken66123 Germany Department of Mathematics Imperial College London United Kingdom Center for Adaptive Rationality Max Planck Institute for Human Development Lentzeallee 94 Berlin14195 Germany Max Planck Institute for Brain Research Max-von-Laue-Straße 4 Frankfurt am Main60438 Germany Technical University of Munich School of Life Sciences Alte Akademie 8 Freising85354 Germany Department of Mathematics School of Computation Information and Technology Technical University of Munich Boltzmannstraße 3 Garching bei München8574

Adaptivity is a dynamical feature that is omnipresent in nature, socio-economics, and technology. For example, adaptive couplings appear in various real-world systems like the power grid, social, and neural networks, and they form the backbone of closed-loop control strategies and machine learning algorithms. In this article, we provide an interdisciplinary perspective on adaptive systems. We reflect on the notion and terminology of adaptivity in different disciplines and discuss which role adaptivity plays for various fields. We highlight common open challenges, and give perspectives on future research directions, looking to inspire interdisciplinary approaches. Copyright © 2023, The Authors. All rights reserved.

关键词： Dynamical systems

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Codebook-Based Beam Tracking for Conformal Array-Enabled UAV MmWave Networks

arXiv

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arXiv 2020年

作者： Zhang, Jinglin Xu, Wenjun Gao, Hui Pan, Miao Han, Zhu Zhang, Ping Key Lab of Universal Wireless Communications Ministry of Education Beijing University of Posts and Telecommunications Beijing100876 China Key Laboratory of Trustworthy Distributed Computing and Service Ministry of Education Beijing University of Posts and Telecommunications Beijing100876 China Department of Electrical and Computer Engineering University of Houston HoustonTX77204 United States University of Houston HoustonTX77004 United States Department of Computer Science and Engineering Kyung Hee University Seoul446-701 Korea Republic of State Key Laboratory of Networking and Switching Technology Beijing University of Posts and Telecommunications Beijing100876 China

Millimeter wave (mmWave) communications can potentially meet the high data-rate requirements of unmanned aerial vehicle (UAV) networks. However, as the prerequisite of mmWave communications, the narrow directional beam tracking is very challenging because of the three-dimensional (3D) mobility and attitude variation of UAVs. Aiming to address the beam tracking difficulties, we propose to integrate the conformal array (CA) with the surface of each UAV, which enables the full spatial coverage and the agile beam tracking in highly dynamic UAV mmWave networks. More specifically, the key contributions of our work are three-fold. 1) A new mmWave beam tracking framework is established for the CA-enabled UAV mmWave network. 2) A specialized hierarchical codebook is constructed to drive the directional radiating element (DRE)-covered cylindrical conformal array (CCA), which contains both the angular beam pattern and the subarray pattern to fully utilize the potential of the CA. 3) A codebook-based multiuser beam tracking scheme is proposed, where the Gaussian process machine learning enabled UAV position/attitude predication is developed to improve the beam tracking efficiency in conjunction with the tracking-error aware adaptive beamwidth control. Simulation results validate the effectiveness of the proposed codebook-based beam tracking scheme in the CA-enabled UAV mmWave network, and demonstrate the advantages of CA over the conventional planner array in terms of spectrum efficiency and outage probability in the highly dynamic scenarios. Copyright © 2020, The Authors. All rights reserved.

关键词： Millimeter waves

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Quick and Accurate False Data Detection in Mobile Crowd Sensing

Quick and Accurate False Data Detection in Mobile Crowd Sens...

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IEEE Annual Joint Conference: INFOCOM, IEEE computer and Communications Societies

作者： Kun Xie Xiaocan Li Xin Wang Gaogang Xie Dongliang Xie Zhenyu Li Jigang Wen Zulong Diao College of Computer Science and Electronics Engineering Hunan University Changsha China Department of Electrical and Computer Engineering State University of New York at Stony Brook State Key Laboratory of Computer Architecture Institute of Computing Technology Chinese Academy of Sciences State key Laboratory of Networking and Switching Technology Beijing University of Posts and Telecommunications

With the proliferation of smartphones, a novel sensing paradigm called Mobile Crowd Sensing (MCS) has emerged very recently. However, the attacks and faults in MCS cause a serious false data problem. Observing the intrinsic low dimensionality of general monitoring data and the sparsity of false data, false data detection can be performed based on the separation of normal data and anomalies. Although the existing separation algorithm based on Direct Robust Matrix Factorization (DRMF) is proven to be effective, requiring iteratively performing Singular Value Decomposition (SVD) for low-rank matrix approximation would result in a prohibitively high accumulated computation cost when the data matrix is large. In this work, we observe the quick false data location feature from our empirical study of DRMF, based on which we propose an intelligent Light weight Low Rank and False Matrix Separation algorithm (LightLRFMS) that can reuse the previous result of the matrix decomposition to deduce the one for the current iteration step. Our algorithm can largely speed up the whole iteration process. From a theoretical perspective, we validate that LightLRFMS only requires one round of SVD computation and thus has very low computation cost. We have done extensive experiments using a PM 2.5 air condition trace and a road traffic trace. Our results demonstrate that LightLRFMS can achieve very good false data detection performance with the same highest detection accuracy as DRMF but with up to 10 times faster speed thanks to its lower computation cost.

关键词： Sparse matrices Sensors Matrix decomposition Monitoring Matrix converters Roads Wireless sensor networks

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Challenges in cybersecurity: Lessons from biological defense systems

arXiv

引用

arXiv 2021年

作者： Schrom, Edward Kinzig, Ann Forrest, Stephanie Graham, Andrea L. Levin, Simon A. Bergstrom, Carl T. Castillo-Chavez, Carlos Collins, James P. De Boer, Rob J. Doupé, Adam Ensafi, Roya Feldman, Stuart Grenfell, Bryan T. Halderman, J. Alex Huijben, Silvie Maley, Carlo Moses, Melanie Perelson, Alan S. Perrings, Charles Plotkin, Joshua Rexford, Jennifer Tiwari, Mohit Department of Ecology and Evolutionary Biology Princeton University 106A Guyot Hall PrincetonNJ08544 United States School of Life Sciences Arizona State University TempeAZ85287 United States Julie Ann Wrigley Global Institute of Sustainability Arizona State University TempeAZ85287 United States Biodesign Center for Biocomputation Security and Society Arizona State University TempeAZ85287 United States School of Computing Informatics and Decision Sciences Engineering Arizona State University TempeAZ85287 United States Santa Fe Institute Santa FeNM87501 United States Department of Biology University of Washington SeattleWA98195 United States Arizona State University TempeAZ85287 United States Theoretical Biology and Bioinformatics Utrecht University Utrecht3584 CH Netherlands Center for Cybersecurity and Digital Forensics Global Security Initiative Arizona State University TempeAZ85287 United States Department of Electrical Engineering and Computer Science Computer Science and Engineering Division University of Michigan Ann ArborMI48109 United States Schmidt Futures New YorkNY10011 United States Princeton School of Public and International Affairs Princeton University PrincetonNJ08544 United States Center for Computer Security and Society University of Michigan Ann ArborMI48109 United States Center for Evolution and Medicine School of Life Sciences Arizona State University TempeAZ85287 United States Arizona Cancer Evolution Center Arizona State University TempeAZ85287 United States Department of Computer Science University of New Mexico AlbuquerqueNM87131 United States University of New Mexico Department of Computer Science AlbuquerqueNM87131 United States Department of Biology University of New Mexico AlbuquerqueNM87131 United States Theoretical Biology and Biophysics Group Los Alamos National Laboratory Los AlamosNM87545 United States Department of Biology University of Pennsylvania PhiladelphiaPA19104 Unite

We explore the commonalities between methods for assuring the security of computer systems (cybersecurity) and the mechanisms that have evolved through natural selection to protect vertebrates against pathogens, and how insights derived from studying the evolution of natural defenses can inform the design of more effective cybersecurity systems. More generally, security challenges are crucial for the maintenance of a wide range of complex adaptive systems, including financial systems, and again lessons learned from the study of the evolution of natural defenses can provide guidance for the protection of such *** Codes A.0. Copyright © 2021, The Authors. All rights reserved.

关键词： Cybersecurity

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