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International Conference on Computational Science and Computational Intelligence (CSCI)

作者： Fang Cherry Liu Michael D. Weiner Kevin Manalo Aaron Jezghani Christopher J. Blanton Christopher Stone Kenneth Suda Nuyun Zhang Dan Zhou Mehmet Belgin Semir Sarajlic Ruben Lara Partnership for an Advanced Computing Environment (PACE) Georgia Institute of Technology Atlanta U.S.A Research Computing and Data Facilitation Service North Carolina State University Raleigh U.S.A Microsoft "Present Affiliation" Atlanta U.S.A

ISBN: (纸本)9781665458429

Most HPC centers face a lack of expertise of data center migrations, as it’s a rare event that only a small portion of HPC professionals experience more than once in their entire professional careers. This paper presents how the Georgia Institute of Technology (Georgia Tech) Partnership for an Advanced computing Environment (PACE) team employed automation to migrate research computing data from the old Rich computing center (Rich) to the new Coda data center (Coda) in 2020. PACE successfully migrated 1844 TB of data for 3550 users without loss of user data. PACE implemented a ‘human-in-the-loop’ automatic workflow to facilitate the migration, interleaving automated scripts with human-driven reviews, significantly reducing staff time commitment while ensuring the integrity and accuracy of data migrations. PACE deployed a cached data movement strategy which reduced the migration downtime significantly. We share our one-year migration journey for the benefit of the HPC community.

关键词： data centers Automation Uncertainty Scientific computing Soft sensors Standardization Human in the loop

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A Method for Constructing research data Provenance in High-Performance computing Systems

A Method for Constructing Research Data Provenance in High-P...

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IEEE International Conference on e-Science and Grid computing

作者： Yuta Namiki Takeo Hosomi Hideyuki Tanushi Akihiro Yamashita Susumu Date Joint Research Laboratory for Integrated Infrastructure of High Performance Computing and Data Analysis Cybermedia Center Osaka University Osaka Japan NEC Corporation Tokyo Japan

research must be reproducible to be verifiable. Provenance, which describes how data was produced, is one of the metadata that can improve reproducibility. In this paper, we propose a method to construct the provenance of research data produced in high-performance computing (HPC) systems. Our method can construct a high-level and user-perspective provenance by integrating information available in HPC systems, such as a workload manager, with low-level data about running programs' behavior captured in an operating system kernel. The method enables users of HPC systems to collect the provenance without modifying assets such as programs and scripts.

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RE-SEGNN:recurrent semantic evidence-aware graph neural network for temporal knowledge graph forecasting

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Science China(Information Sciences) 2025年第2期68卷 103-119页

作者： Wenyu CAI Mengfan LI Xuanhua SHI Yuanxin FAN Quntao ZHU Hai JIN National Engineering Research Center for Big Data Technology and System Services Computing Technology and System LabCluster and Grid Computing LabSchool of Computer Science and TechnologyHuazhong University of Science and Technology

Temporal knowledge graph(TKG) reasoning, has seen widespread use for modeling real-world events, particularly in extrapolation settings. Nevertheless, most previous studies are embedded models, which require both entity and relation embedding to make predictions, ignoring the semantic correlations among different entities and relations within the same timestamp. This can lead to random and nonsensical predictions when unseen entities or relations occur. Furthermore, many existing models exhibit limitations in handling highly correlated historical facts with extensive temporal depth. They often either overlook such facts or overly accentuate the relationships between recurring past occurrences and their current counterparts. Due to the dynamic nature of TKG, effectively capturing the evolving semantics between different timestamps can be *** address these shortcomings, we propose the recurrent semantic evidenceaware graph neural network(RE-SEGNN), a novel graph neural network that can learn the semantics of entities and relations simultaneously. For the former challenge, our model can predict a possible answer to missing quadruples based on semantics when facing unseen entities or relations. For the latter problem, based on an obvious established force, both the recency and frequency of semantic history tend to confer a higher reference value for the current. We use the Hawkes process to compute the semantic trend, which allows the semantics of recent facts to gain more attention than those of distant facts. Experimental results show that RE-SEGNN outperforms all SOTA models in entity prediction on 6 widely used datasets, and 5 datasets in relation prediction. Furthermore, the case study shows how our model can deal with unseen entities and relations.

关键词： knowledge graph reasoning temporal knowledge graph Hawkes process semantic evidence

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Precise control of page cache for containers

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Frontiers of Computer Science 2024年第2期18卷 17-30页

作者： Kun WANG Song WU Shengbang LI Zhuo HUANG Hao FAN Chen YU Hai JIN National Engineering Research Center for Big Data Technology and System Services Computing Technology and System LabCluster and Grid Computing Lab School of Computer Science and TechnologyHuazhong University of Science and TechnologyWuhan 430074China

Container-based virtualization isbecoming increasingly popular in cloud computing due to its efficiency and *** isolation is a fundamental property of *** works have indicated weak resource isolation could cause significant performance degradation for containerized applications and enhanced resource ***,current studies have almost not discussed the isolation problems of page cache which is a key resource for *** leverage memory cgroup to control page cache ***,existing policy introduces two major problems in a container-based ***,containers can utilize more memory than limited by their cgroup,effectively breaking memory ***,the Os kernel has to evict page cache to make space for newly-arrived memory requests,slowing down containerized *** paper performs an empirical study of these problems and demonstrates the performance impacts on containerized *** we propose pCache(precise control of page cache)to address the problems by dividing page cache into private and shared and controlling both kinds of page cache separately and *** do so,pCache leverages two new technologies:fair account(f-account)and evict on demand(EoD).F-account splits the shared page cache charging based on per-container share to prevent containers from using memory for free,enhancing memory *** EoD reduces unnecessary page cache evictions to avoid the performance *** evaluation results demonstrate that our system can effectively enhance memory isolation for containers and achieve substantial performance improvement over the original page cache management policy.

关键词： page cache memory cgroup container isolation cloud computing

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UCat: heterogeneous memory management for unikernels

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Frontiers of Computer Science 2023年第1期17卷 51-61页

作者： Chong TIAN Haikun LIU Xiaofei LIAO Hai JIN National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab/Cluster and Grid Computing LabSchool of Computing Science and TechnologyHuazhong University of Science and TechnologyWuhan 430074China

Unikernels provide an efficient and lightweight way to deploy cloud computing services in application-specialized and single-address-space virtual machines (VMs). They can efficiently deploy hundreds of unikernel-based VMs in a single physical server. In such a cloud computing platform, main memory is the primary bottleneck resource for high-density application deployment. Recently, non-volatile memory (NVM) technologies has become increasingly popular in cloud data centers because they can offer extremely large memory capacity at a low expense. However, there still remain many challenges to utilize NVMs for unikernel-based VMs, such as the difficulty of heterogeneous memory allocation and high performance overhead of address *** this paper, we present UCat, a heterogeneous memory management mechanism that support multi-grained memory allocation for unikernels. We propose front-end/back-end cooperative address space mapping to expose the host memory heterogeneity to unikernels. UCat exploits large pages to reduce the cost of two-layer address translation in virtualization environments, and leverages slab allocation to reduce memory waste due to internal memory fragmentation. We implement UCat based on a popular unikernel--OSv and conduct extensive experiments to evaluate its efficiency. Experimental results show that UCat can reduce the memory consumption of unikernels by 50% and TLB miss rate by 41%, and improve the throughput of real-world benchmarks such as memslap and YCSB by up to 18.5% and 14.8%, respectively.

关键词： unikernel virtualization non-volatile memory heterogeneous memory large page slab allocation

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Answering reachability queries with ordered label constraints over labeled graphs

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Frontiers of Computer Science 2024年第1期18卷 105-117页

作者： Daoliang HE Pingpeng YUAN Hai JIN National Engineering Research Center for Big Data Technology and System Services Computing Technology and System LabCluster and Grid Computing LabSchool of Computer Science&TechnologyHuazhong University of Science and TechnologyWuhan 430074China

Reachability query plays a vital role in many graph analysis *** researches proposed many methods to efficiently answer reachability queries between vertex *** many real graphs are labeled graph,it highly demands Label-Constrained Reachability(LCR)query inwhich constraint includes a set of labels besides vertex *** researches proposed several methods for answering some LCR queries which require appearance of some labels specified in constraints in the *** that constraint may be a label set,query constraint may be ordered labels,namely OLCR(Ordered-Label-Constrained Reachability)queries which retrieve paths matching a sequence of ***,no solutions are available for ***,we propose DHL,a novel bloom filter based indexing technique for answering OLCR *** can be used to check reachability between vertex *** the answers are not no,then constrained DFS is ***,we employ DHL followed by performing constrained DFS to answer OLCR *** show that DHL has a bounded false positive rate,and it's powerful in saving indexing time and *** experiments on 10 real-life graphs and 12 synthetic graphs demonstrate that DHL achieves about 4.8-22.5 times smaller index space and 4.6-114 times less index construction time than two state-of-art techniques for LCR queries,while achieving comparable query response *** results also show that our algorithm can answer OLCR queries effectively.

关键词： graph ordered-label-constrained reachability partial index bloom filter query processing

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ARCHER:a ReRAM-based accelerator for compressed recommendation systems

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Frontiers of Computer Science 2024年第5期18卷 147-160页

作者： Xinyang SHEN Xiaofei LIAO Long ZHENG Yu HUANG Dan CHEN Hai JIN National Engineering Research Center for Big Data Technology and System Services Computing Technology and System LabClusters and Grid Computing LabSchool of Computer Science and TechnologyHuazhong University of Science and TechnologyWuhan 430074China

Modern recommendation systems are widely used in modern data *** random and sparse embedding lookup operations are the main performance bottleneck for processing recommendation systems on traditional platforms as they induce abundant data movements between computing units and ***-based processing-in-memory(PIM)can resolve this problem by processing embedding vectors where they are ***,the embedding table can easily exceed the capacity limit of a monolithic ReRAM-based PIM chip,which induces off-chip accesses that may offset the PIM ***,we deploy the decomposed model on-chip and leverage the high computing efficiency of ReRAM to compensate for the decompression performance *** this paper,we propose ARCHER,a ReRAM-based PIM architecture that implements fully yon-chip recommendations under resource ***,we make a full analysis of the computation pattern and access pattern on the decomposed *** on the computation pattern,we unify the operations of each layer of the decomposed model in multiply-and-accumulate *** on the access observation,we propose a hierarchical mapping schema and a specialized hardware design to maximize resource *** the unified computation and mapping strategy,we can coordinatethe inter-processing elements *** evaluation shows that ARCHER outperforms the state-of-the-art GPU-based DLRM system,the state-of-the-art near-memory processing recommendation system RecNMP,and the ReRAM-based recommendation accelerator REREC by 15.79×,2.21×,and 1.21× in terms of performance and 56.06×,6.45×,and 1.71× in terms of energy savings,respectively.

关键词： recommendation system ReRAM processing-in-memory embedding layer

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A survey on dynamic graph processing on GPUs: concepts, terminologies and systems

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Frontiers of Computer Science 2024年第4期18卷 1-23页

作者： Hongru GAO Xiaofei LIAO Zhiyuan SHAO Kexin LI Jiajie CHEN Hai JIN National Engineering Research Center for Big Data Technology and System/Services Computing Technology and System Lab/Cluster and Grid Computing Lab School of Computer Science and TechnologyHuazhong University of Science and TechnologyWuhan 430074China Zhejiang Lab Hangzhou 311121China

Graphs that are used to model real-world entities with vertices and relationships among entities with edges,have proven to be a powerful tool for describing real-world problems in *** most real-world scenarios,entities and their relationships are subject to constant *** that record such changes are called dynamic *** recent years,the widespread application scenarios of dynamic graphs have stimulated extensive research on dynamic graph processing systems that continuously ingest graph updates and produce up-to-date graph analytics *** the scale of dynamic graphs becomes larger,higher performance requirements are demanded to dynamic graph processing *** the massive parallel processing power and high memory bandwidth,GPUs become mainstream vehicles to accelerate dynamic graph processing ***-based dynamic graph processing systems mainly address two challenges:maintaining the graph data when updates occur(i.e.,graph updating)and producing analytics results in time(i.e.,graph computing).In this paper,we survey GPU-based dynamic graph processing systems and review their methods on addressing both graph updating and graph *** comprehensively discuss existing dynamic graph processing systems on GPUs,we first introduce the terminologies of dynamic graph processing and then develop a taxonomy to describe the methods employed for graph updating and graph *** addition,we discuss the challenges and future research directions of dynamic graph processing on GPUs.

关键词： dynamic graphs graph processing graph algorithms GPUs

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ReCSA:a dedicated sort accelerator using ReRAM-based content addressable memory

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Frontiers of Computer Science 2023年第2期17卷 1-13页

作者： Huize LI Hai JIN Long ZHENG Yu HUANG Xiaofei LIAO National Engineering Research Center for Big Data Technology and System Services Computing Technology and System LabClusters and Grid Computing LabSchool of Computer Science and TechnologyHuazhong University of Science and TechnologyWuhan 430074China

With the increasing amount of data,there is an urgent need for efficient sorting algorithms to process large data *** sorting algorithms have attracted much attention because they can take advantage of different hardware's *** the traditional hardware sort accelerators suffer“memory wall”problems since their multiple rounds of data transmission between the memory and the *** this paper,we utilize the in-situ processing ability of the ReRAM crossbar to design a new ReCAM array that can process the matrix-vector multiplication operation and the vector-scalar comparison in the same array *** this designed ReCAM array,we present ReCSA,which is the first dedicated ReCAM-based sort *** hardware designs,we also develop algorithms to maximize memory utilization and minimize memory exchanges to improve sorting *** sorting algorithm in ReCSA can process various data types,such as integer,float,double,and *** also present experiments to evaluate the performance and energy efficiency against the state-of-the-art sort *** experimental results show that ReCSA has 90.92×,46.13×,27.38×,84.57×,and 3.36×speedups against CPU-,GPU-,FPGA-,NDP-,and PIM-based platforms when processing numeric data *** also has 24.82×,32.94×,and 18.22×performance improvement when processing string data sets compared with CPU-,GPU-,and FPGA-based platforms.

关键词： ReCAM parallel sorting architecture design processing-in-memory

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A data Driven Approach to Informal HPC Training Evaluation 23

A Data Driven Approach to Informal HPC Training Evaluation

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2023 Practice and Experience in Advanced research computing, PEARC 2023

作者： Mullen, Julia Milechin, Lauren MIT Lincoln Laboratory LexingtonMA United States Office of Research Computing and Data MIT Office of Research Computing and Data CambridgeMA United States

ISBN: (纸本)9781450399852

The High Performance computing (HPC) community has a long history of educating researchers, students, and practitioners to use HPC systems effectively and efficiently, primarily through informal, non-graded workshops and short courses. While nearly all workshop evaluations capture user satisfaction and perform pre- and post-workshop evaluations, to our knowledge none of them capture changes in user behavior as a means of evaluating learning. To more fully evaluate a student's skill development and capture improvements in the use of HPC systems, we developed a data centric method for evaluating informal HPC training. The evaluation methodology is described in four steps: design clear learning objectives, map the learning objectives and content to the data collection instruments and queries of interest, collect the data, and explore and analyze the data. This is a process easily adaptable by any HPC center because we focus on data that are available to all HPC trainers, e.g. workshop surveys, questions, and job performance data from the HPC system, primarily from an HPC scheduler. © 2023 Owner/Author.

关键词： Students

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