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arXiv 2017年

作者： Heirendt, Laurent Arreckx, Sylvain Pfau, Thomas Mendoza, Sebastián N. Richelle, Anne Heinken, Almut Haraldsdóttir, Hulda S. Wachowiak, Jacek Keating, Sarah M. Vlasov, Vanja Magnusdóttir, Stefania Ng, Chiam Yu Preciat, German Žagare, Alise Chan, Siu H.J. Aurich, Maike K. Clancy, Catherine M. Modamio, Jennifer Sauls, John T. Noronha, Alberto Bordbar, Aarash Cousins, Benjamin El Assal, Diana C. Valcarcel, Luis V. Apaolaza, Iñigo Ghaderi, Susan Ahookhosh, Masoud Guebila, Marouen Ben Kostromins, Andrejs Sompairac, Nicolas Le, Hoai M. Ma, Ding Sun, Yuekai Wang, Lin Yurkovich, James T. Oliveira, Miguel A.P. Vuong, Phan T. El Assal, Lemmer P. Kuperstein, Inna Zinovyev, Andrei Scott Hinton, H. Bryant, William A. Aragón Artacho, Francisco J. Planes, Francisco J. Stalidzans, Egils Maass, Alejandro Vempala, Santosh Hucka, Michael Saunders, Michael A. Maranas, Costas D. Lewis, Nathan E. Sauter, Thomas Palsson, Bernhard Ø. Thiele, Ines Fleming, Ronan M.T. Luxembourg Centre for Systems Biomedicine University of Luxembourg 6 avenue du Swing BelvauxL-4367 Luxembourg Life Sciences Research Unit University of Luxembourg 6 avenue du Swing BelvauxL-4367 Luxembourg University of Chile Blanco Encalada 2085 Santiago Chile Department of Pediatrics University of California San Diego School of Medicine San DiegoCA92093 United States Hinxton CambridgeCB10 1SD United Kingdom Department of Chemical Engineering Pennsylvania State University University University ParkPA16802 United States Department of Physics University of California San Diego 9500 Gilman Dr. San DiegoCA92093 United States Bioinformatics and Systems Biology Program University of California San Diego San DiegoCA United States Sinopia Biosciences San DiegoCA United States School of Computer Science Algorithms and Randomness Center Georgia Institute of Technology AtlantaGA United States Biomedical Engineering and Sciences Department TECNUN University of Navarra Paseo de Manuel Lardizabal 13 San Sebastian20018 Spain Institute of Microbiology and Biotechnology University of Latvia Jelgavas iela 1 RigaLV-1004 Latvia Department of Management Science and Engineering Stanford University StanfordCA94305-4026 United States Bioengineering Department University of California San Diego San DiegoCA United States Utah State University Research Foundation 1695 North Research Park Way North LoganUT84341 United States Centre for Integrative Systems Biology and Bioinformatics Department of Life Sciences Imperial College London London United Kingdom Department of Mathematics University of Alicante Spain California Institute of Technology Computing and Mathematical Sciences MC 305-16 1200 E. California Blvd. PasadenaCA91125 United States Mathomics Center for Mathematical Modeling University of Chile Beauchef 851 Santiago Chile Novo Nordisk Foundation Center for Biosustainability University of California San Diego San DiegoCA92093 Uni

COnstraint-Based Reconstruction and Analysis (COBRA) provides a molecular mechanistic framework for integrative analysis of experimental data and quantitative prediction of physicochemically and biochemically feasible phenotypic states. The COBRA Toolbox is a comprehensive software suite of interoperable COBRA methods. It has found widespread applications in biology, biomedicine, and biotechnology because its functions can be flexibly combined to implement tailored COBRA protocols for any biochemical network. Version 3.0 includes new methods for quality controlled reconstruction, modelling, topological analysis, strain and experimental design, network visualisation as well as network integration of chemoinformatic, metabolomic, transcriptomic, proteomic, and thermochemical data. New multi-lingual code integration also enables an expansion in COBRA application scope via high-precision, high-performance, and nonlinear numerical optimisation solvers for multi-scale, multi-cellular and reaction kinetic modelling, respectively. This protocol can be adapted for the generation and analysis of a constraint-based model in a wide variety of molecular systems biology scenarios. This protocol is an update to the COBRA Toolbox 1.0 and 2.0. The COBRA Toolbox 3.0 provides an unparalleled depth of constraint-based reconstruction and analysis methods. Copyright © 2017, The Authors. All rights reserved.

关键词： Data integration

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Comparative and demographic analysis of orang-utan genomes (vol 469, pg 529, 2011)

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NATURE 2022年第7924期608卷 E36-E36页

作者： Locke, Devin P. Hillier, LaDeana W. Warren, Wesley C. Worley, Kim C. Nazareth, Lynne V. Muzny, Donna M. Yang, Shiaw-Pyng Wang, Zhengyuan Chinwalla, Asif T. Minx, Pat Mitreva, Makedonka Cook, Lisa Delehaunty, Kim D. Fronick, Catrina Schmidt, Heather Fulton, Lucinda A. Fulton, Robert S. Nelson, Joanne O. Magrini, Vincent Pohl, Craig Graves, Tina A. Markovic, Chris Cree, Andy Dinh, Huyen H. Hume, Jennifer Kovar, Christie L. Fowler, Gerald R. Lunter, Gerton Meader, Stephen Heger, Andreas Ponting, Chris P. Marques-Bonet, Tomas Alkan, Can Chen, Lin Cheng, Ze Kidd, Jeffrey M. Eichler, Evan E. White, Simon Searle, Stephen Vilella, Albert J. Chen, Yuan Flicek, Paul Ma, Jian Raney, Brian Suh, Bernard Burhans, Richard Herrero, Javier Haussler, David Faria, Rui Fernando, Olga Darre, Fleur Farre, Domenec Gazave, Elodie Oliva, Meritxell Navarro, Arcadi Roberto, Roberta Capozzi, Oronzo Archidiacono, Nicoletta Della Valle, Giuliano Purgato, Stefania Rocchi, Mariano Konkel, Miriam K. Walker, Jerilyn A. Ullmer, Brygg Batzer, Mark A. Smit, Arian F. A. Hubley, Robert Casola, Claudio Schrider, Daniel R. Hahn, Matthew W. Quesada, Victor Puente, Xose S. Ordonez, Gonzalo R. Lopez-Otin, Carlos Vinar, Tomas Brejova, Brona Ratan, Aakrosh Harris, Robert S. Miller, Webb Kosiol, Carolin Lawson, Heather A. Taliwal, Vikas Martins, Andre L. Siepel, Adam RoyChoudhury, Arindam Ma, Xin Degenhardt, Jeremiah Bustamante, Carlos D. Gutenkunst, Ryan N. Mailund, Thomas Dutheil, Julien Y. Hobolth, Asger Schierup, Mikkel H. Ryder, Oliver A. Yoshinaga, Yuko de Jong, Pieter J. Weinstock, George M. Rogers, Jeffrey Mardis, Elaine R. Gibbs, Richard A. Wilson, Richard K. The Genome Center at Washington University Washington University School of Medicine Saint Louis Missouri USA Human Genome Sequencing Center Department of Molecular and Human Genetics Baylor College of Medicine One Baylor Plaza Houston Texas USA MRC Functional Genomics Unit and Department of Physiology Anatomy and Genetics University of Oxford Le Gros Clark Building Oxford UK Wellcome Trust Centre for Human Genetics Oxford UK Department of Genome Sciences University of Washington School of Medicine Seattle Washington USA IBE Institut de Biologia Evolutiva (UPF-CSIC) Universitat Pompeu Fabra PRBB Doctor Aiguader 88 Barcelona Spain Howard Hughes Medical Institute Seattle Washington USA CIBIO Centro de Investigação em Biodiversidade e Recursos Genéticos Universidade do Porto Campus Agrário de Vairão Vairão Portugal Instituto de Tecnologia Química e Biológica Universidade Nova de Lisboa Oeiras Portugal ICREA (Institució Catalana de Recerca i Estudis Avançats) and INB (Instituto Nacional de Bioinformática) PRBB Doctor Aiguader 88 Barcelona Spain Wellcome Trust Sanger Institute Wellcome Trust Genome Campus Cambridge UK European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge UK Center for Biomolecular Science and Engineering University of California Santa Cruz California USA Center for Comparative Genomics and Bioinformatics Penn State University University Park Pennsylvania USA Department of Biology University of Bari Bari Italy Department of Biology University of Bologna Bologna Italy Department of Biological Sciences Louisiana State University Baton Rouge Louisiana USA Center for Computation and Technology Department of Computer Sciences Louisiana State University Baton Rouge Louisiana USA Institute for Systems Biology Seattle Washington USA Department of Biology and School of Informatics and Computing Indiana University Bloomington Indiana USA Instituto Universitario de Oncologia Departamento de Bioquimica y Biol

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Author Correction: Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery

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Nature neuroscience 2025年第1期28卷 216页

作者： Boyan Bonev Gonçalo Castelo-Branco Fei Chen Simone Codeluppi M Ryan Corces Jean Fan Myriam Heiman Kenneth Harris Fumitaka Inoue Manolis Kellis Ariel Levine Mo Lotfollahi Chongyuan Luo Kristen R Maynard Mor Nitzan Vijay Ramani Rahul Satijia Lucas Schirmer Yin Shen Na Sun Gilad S Green Fabian Theis Xiao Wang Joshua D Welch Ozgun Gokce Genevieve Konopka Shane Liddelow Evan Macosko Omer Ali Bayraktar Naomi Habib Tomasz J Nowakowski Helmholtz Pioneer Campus Helmholtz Zentrum München Neuherberg Germany. Physiological Genomics Biomedical Center Ludwig-Maximilians-Universität München Munich Germany. Laboratory of Molecular Neurobiology Department of Medical Biochemistry and Biophysics Karolinska Institutet Stockholm Sweden. The Broad Institute of MIT and Harvard Cambridge MA USA. Moleculent Stockholm Sweden. Gladstone Institute of Neurological Disease San Francisco CA USA. Gladstone Institute of Data Science and Biotechnology San Francisco CA USA. Department of Neurology University of California San Francisco San Francisco CA USA. Department of Biomedical Engineering Johns Hopkins University Baltimore MD USA. Department of Brain and Cognitive Sciences MIT Cambridge MA USA. The Picower Institute for Learning and Memory MIT Cambridge MA USA. UCL Queen Square Institute of Neurology University College London London UK. Institute for the Advanced Study of Human Biology (WPI-ASHBi) Kyoto University Kyoto Japan. Computer Science and Artificial Intelligence Lab Massachusetts Institute of Technology Cambridge MA USA. Spinal Circuits and Plasticity Unit National Institute of Neurological Disorders and Stroke Bethesda MD USA. Institute of Computational Biology Helmholtz Center Munich - German Research Center for Environmental Health Neuherberg Germany. Wellcome Sanger Institute Wellcome Genome Campus Cambridge UK. Department of Human Genetics University of California Los Angeles Los Angeles CA USA. Lieber Institute for Brain Development Baltimore MD USA. Department of Psychiatry Johns Hopkins School of Medicine Baltimore MD USA. Department of Neuroscience Johns Hopkins School of Medicine Baltimore MD USA. School of Computer Science and Engineering The Hebrew University of Jerusalem Jerusalem Israel. Racah Institute of Physics The Hebrew University of Jerusalem Jerusalem Israel. Faculty of Medicine The Hebrew University of Jerusalem Jerusalem Israel. Department of Biochemis

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Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

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Scientific data 2020年第1期7卷 247页

作者： Marek Ostaszewski Alexander Mazein Marc E Gillespie Inna Kuperstein Anna Niarakis Henning Hermjakob Alexander R Pico Egon L Willighagen Chris T Evelo Jan Hasenauer Falk Schreiber Andreas Dräger Emek Demir Olaf Wolkenhauer Laura I Furlong Emmanuel Barillot Joaquin Dopazo Aurelio Orta-Resendiz Francesco Messina Alfonso Valencia Akira Funahashi Hiroaki Kitano Charles Auffray Rudi Balling Reinhard Schneider Luxembourg Centre for Systems Biomedicine University of Luxembourg Belvaux Luxembourg. European Institute for Systems Biology and Medicine (EISBM) Vourles France. Ontario Institute for Cancer Research Toronto Canada. College of Pharmacy and Health Sciences St. John's University Queens NY USA. Institut Curie PSL Research University Mines Paris Tech Inserm Paris France. Department of Biology Univ. Évry University of Paris-Saclay Genopole 91025 Évry France. European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Hinxton UK. Institute of Data Science and Biotechnology Gladstone Institutes San Francisco United States. Department of Bioinformatics-BiGCaT NUTRIM Maastricht University Maastricht The Netherlands. Maastricht Centre for Systems Biology Maastricht University Maastricht The Netherlands. Helmholtz Zentrum München Institute of Computational Biology Neuherberg Germany. Center for Mathematics Technische Universität München Garching Germany. Faculty of Mathematics and Natural Sciences University of Bonn Bonn Germany. University of Konstanz Department of Computer and Information Science Konstanz Germany. Monash University Faculty of Information Technology Melbourne Australia. Computational Systems Biology of Infection and Antimicrobial-Resistant Pathogens Institute for Bioinformatics and Medical Informatics (IBMI) University of Tübingen 72076 Tübingen Germany. Department of Computer Science University of Tübingen 72076 Tübingen Germany. German Center for Infection Research (DZIF) partner site Tübingen Germany. Department of Molecular and Medical Genetics School of Medicine Oregon Health & Science University Portland USA. Department of Systems Biology & Bioinformatics University of Rostock Rostock Germany. Stellenbosch Institute of Advanced Study (STIAS) Wallenberg Research Centre at Stellenbosch University 7602 Stellenbosch South Africa. Research Programme on Biomedical informatics Hospital del Mar Medical Research

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

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Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

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Standards in genomic sciences 2018年第1期13卷 17页

作者： Dagmar Waltemath Frank T Bergmann Claudine Chaouiya Tobias Czauderna Padraig Gleeson Carole Goble Martin Golebiewski Michael Hucka Nick Juty Olga Krebs Nicolas Le Novère Huaiyu Mi Ion I Moraru Chris J Myers David Nickerson Brett G Olivier Nicolas Rodriguez Falk Schreiber Lucian Smith Fengkai Zhang Eric Bonnet 1Department of Systems Biology and Bioinformatics University of Rostock Rostock Germany. 2Department of Computing and Mathematical Sciences California Institute of Technology Pasadena CA USA. 4Instituto Gulbenkian de Ciência - IGC Rua da Quinta Grande Oeiras Portugal. 3IPK Gatersleben Gatersleben Germany. 5Department of Neuroscience Physiology and Pharmacology University College London London UK. 6School of Computer Science The University of Manchester Manchester UK. 7Heidelberg Institute for Theoretical Studies Heidelberg Germany. 8EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge UK. 14The Babraham Institute Babraham Research Campus Cambridge UK. 9Department of preventive medicine Keck School of Medicine University of Southern California Los Angeles CA USA. 10Center for Cell Analysis and Modeling University of Connecticut Health Center Farmington CT USA. 11Department of Electrical and Computer Engineering University of Utah Salt Lake City USA. 12Auckland Bioengineering Institute University of Auckland Auckland New Zealand. 13Systems Bioinformatics VU University Amsterdam Amsterdam The Netherlands. 15Martin Luther University Halle-Wittenberg Halle Germany. 16Monash University Melbourne Australia. Computational Biology Unit Laboratory of Systems Biology National Institute of Allergy and Infectious Diseases NIH Bethesda MD USA. 18Institut Curie Paris France. INSERM U900 75248 Paris France. 20Mines ParisTech 77300 Fontainebleau Paris France.

[This corrects the article DOI: 10.4056/sigs.5279417.].

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Genomic basis for RNA alterations in cancer (vol 578, pg 129, 2020)

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NATURE 2023年第7948期614卷 E37-E37页

作者： Calabrese, Claudia Davidson, Natalie R. Demircioglu, Deniz Fonseca, Nuno A. He, Yao Lehmann, Kjong-Van Liu, Fenglin Shiraishi, Yuichi Soulette, Cameron M. Urban, Lara Greger, Liliana Li, Siliang Liu, Dongbing Perry, Marc D. Xiang, Qian Zhang, Fan Zhang, Junjun Bailey, Peter Erkek, Serap Hoadley, Katherine A. Hou, Yong Huska, Matthew R. Kilpinen, Helena Korbel, Jan O. Marin, Maximillian G. Markowski, Julia Nandi, Tannistha Pan-Hammarstrom, Qiang Pedamallu, Chandra Sekhar Siebert, Reiner Stark, Stefan G. Su, Hong Tan, Patrick Waszak, Sebastian M. Yung, Christina Zhu, Shida Awadalla, Philip Creighton, Chad J. Meyerson, Matthew Ouellette, B. F. Francis Wu, Kui Yang, Huanming Brazma, Alvis Brooks, Angela N. Goke, Jonathan Ratsch, Gunnar Schwarz, Roland F. Stegle, Oliver Zhang, Zemin European Molecular Biology Laboratory European Bioinformatics Institute Hinxton UK European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany CIBIO/InBIO - Research Center in Biodiversity and Genetic Resources Universidade do Porto Vairão Portugal Berlin Institute for Medical Systems Biology Max Delbruck Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) partner site Berlin Germany German Cancer Research Center (DKFZ) Heidelberg Germany Berlin Institute for Medical Systems Biology Max Delbrück Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) Partner site Berlin Berlin Germany European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Division of Computational Genomics and Systems Genetics German Cancer Research Center (DKFZ) Heidelberg Germany ETH Zurich Zurich Switzerland Memorial Sloan Kettering Cancer Center New York NY USA Weill Cornell Medical College New York NY USA SIB Swiss Institute of Bioinformatics Lausanne Switzerland University Hospital Zurich Zurich Switzerland Computational Biology Center Memorial Sloan Kettering Cancer Center New York NY USA Department of Biology ETH Zurich Zürich Switzerland Department of Computer Science ETH Zurich Zurich Switzerland Korea University Seoul South Korea Computational and Systems Biology Program Memorial Sloan Kettering Cancer Center New York NY USA Department of Physiology and Biophysics Weill Cornell Medicine New York NY USA Institute for Computational Biomedicine Weill Cornell Medicine New York NY USA Controlled Department and Institution New York NY USA Englander Institute for Precision Medicine Weill Cornell Medicine New York NY USA National University of Singapore Singapore Singapore Genome Institute of Singapore Singapore Singapore Computational and Systems Biology Genome Institute of Singap

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The evolutionary history of 2,658 cancers (vol 578, pg 122, 2020)

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NATURE 2023年第7948期614卷 E42-E42页

作者： Gerstung, Moritz Jolly, Clemency Leshchiner, Ignaty Dentro, Stefan C. Gonzalez, Santiago Rosebrock, Daniel Mitchell, Thomas J. Rubanova, Yulia Anur, Pavana Yu, Kaixian Tarabichi, Maxime Deshwar, Amit Wintersinger, Jeff Kleinheinz, Kortine Vazquez-Garcia, Ignacio Haase, Kerstin Jerman, Lara Sengupta, Subhajit Macintyre, Geoff Malikic, Salem Donmez, Nilgun Livitz, Dimitri G. Cmero, Marek Demeulemeester, Jonas Schumacher, Steven Fan, Yu Yao, Xiaotong Lee, Juhee Schlesner, Matthias Boutros, Paul C. Bowtell, David D. Zhu, Hongtu Getz, Gad Imielinski, Marcin Beroukhim, Rameen Sahinalp, S. Cenk Ji, Yuan Peifer, Martin Markowetz, Florian Mustonen, Ville Yuan, Ke Wang, Wenyi Morris, Quaid D. Spellman, Paul T. Wedge, David C. Van Loo, Peter European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Wellcome Sanger Institute Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany University of Ljubljana Ljubljana Slovenia The Francis Crick Institute London UK Big Data Institute University of Oxford Oxford UK Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Big Data Institute Li Ka Shing Centre University of Oxford Oxford UK University of Cambridge Cambridge UK Cambridge University Hospitals NHS Foundation Trust Cambridge UK Department of Applied Mathematics and Theoretical Physics Centre for Mathematical Sciences University of Cambridge Cambridge UK Department of Epidemiology and Biostatistics Memorial Sloan Kettering Cancer Center New York NY USA Department of Statistics Columbia University New York NY USA Department of Haematology University of Cambridge Cambridge UK University of Leuven Leuven Belgium Broad Institute of MIT and Harvard Cambridge MA USA Center for Cancer Research Massachusetts General Hospital Charlestown MA USA Department of Pathology Massachusetts General Hospital Boston MA USA Harvard Medical School Boston MA USA Center for Cancer Research Massachusetts General Hospital Boston MA USA Dana-Farber Cancer Institute Boston MA USA Department of Medical Oncology Dana-Farber Cancer Institute Boston MA USA Department of Cancer Biology Dana-Farber Cancer Institute Boston MA USA Oxford NIHR Biomedical Research Centre Oxford UK Oxford NIHR Biomedical Research Centre University of Oxford Oxford UK University of Toronto Toronto Ontario Canada Vector Institute Toronto Ontario Canada Vector Institute Toronto ON Canada Department of Computer Science University of Toronto Toronto ON Canada Ontario Institute for Cancer Research Toronto Ontario Canada University of California Los Angeles

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Patterns of somatic structural variation in human cancer genomes (vol 578, pg 112, 2020)

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NATURE 2023年第7948期614卷 E38-E38页

作者： Li, Yilong Roberts, Nicola D. Wala, Jeremiah A. Shapira, Ofer Schumacher, Steven E. Kumar, Kiran Khurana, Ekta Waszak, Sebastian Korbel, Jan O. Haber, James E. Imielinski, Marcin Weischenfeldt, Joachim Beroukhim, Rameen Campbell, Peter J. Cancer Genome Project Wellcome Trust Sanger Institute Hinxton UK Totient Inc Cambridge MA USA Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Department of Haematology University of Cambridge Cambridge UK Cambridge University Hospitals NHS Foundation Trust Cambridge UK Korea Advanced Institute of Science and Technology Daejeon South Korea Department of Zoology Genetics and Physical Anthropology University of Santiago de Compostela Santiago de Compostela Spain Centre for Research in Molecular Medicine and Chronic Diseases (CIMUS) University of Santiago de Compostela Santiago de Compostela Spain The Biomedical Research Centre (CINBIO) University of Vigo Vigo Spain Centre for Research in Molecular Medicine and Chronic Diseases (CiMUS) Universidade de Santiago de Compostela Santiago de Compostela Spain Department of Zoology Genetics and Physical Anthropology (CiMUS) Universidade de Santiago de Compostela Santiago de Compostela Spain The Biomedical Research Centre (CINBIO) Universidade de Vigo Vigo Spain The Broad Institute of Harvard and MIT Cambridge MA USA Bioinformatics and Integrative Genomics Harvard University Cambridge MA USA Department of Cancer Biology Dana-Farber Cancer Institute Boston MA USA Broad Institute of MIT and Harvard Cambridge MA USA Department of Medical Oncology Dana-Farber Cancer Institute Boston MA USA Harvard Medical School Boston MA USA Massachusetts General Hospital Center for Cancer Research Charlestown MA USA Dana-Farber Cancer Institute Boston MA USA Department of Biostatistics and Computational Biology Dana-Farber Cancer Institute and Harvard Medical School Boston MA USA Weill Cornell Medical College New York NY USA Department of Physiology and Biophysics Weill Cornell Medicine New York NY USA Institute for Computational Biomedicine Weill Cornell Medicine New York NY USA Controlled Department and Institution New York NY USA Englander Institute for Precision Medicine Weill Cornell Medicine Ne

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The repertoire of mutational signatures in human cancer (vol 578, pg 94, 2020)

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NATURE 2023年第7948期614卷 E41-E41页

作者： Alexandrov, Ludmil B. Kim, Jaegil Haradhvala, Nicholas J. Huang, Mi Ni Ng, Alvin Wei Tian Wu, Yang Boot, Arnoud Covington, Kyle R. Gordenin, Dmitry A. Bergstrom, Erik N. Islam, S. M. Ashiqul Lopez-Bigas, Nuria Klimczak, Leszek J. McPherson, John R. Morganella, Sandro Sabarinathan, Radhakrishnan Wheeler, David A. Mustonen, Ville Getz, Gad Rozen, Steven G. Stratton, Michael R. Department of Cellular and Molecular Medicine Department of Bioengineering Moores Cancer Center University of California San Diego CA USA Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Department of Cellular and Molecular Medicine and Department of Bioengineering University of California San Diego La Jolla CA USA UC San Diego Moores Cancer Center San Diego CA USA University of California San Diego San Diego CA USA Broad Institute of MIT and Harvard Cambridge MA USA Center for Cancer Research Massachusetts General Hospital Boston MA USA Massachusetts General Hospital Boston MA USA Department of Pathology Massachusetts General Hospital Boston MA USA Harvard Medical School Boston MA USA Laboratory for Medical Science Mathematics RIKEN Center for Integrative Medical Sciences Yokohama Japan Computational Biology Program Ontario Institute for Cancer Research Toronto ON Canada Programme in Cancer & Stem Cell Biology Duke-NUS Medical School Singapore Singapore Centre for Computational Biology Duke-NUS Medical School Singapore Singapore Programme in Cancer and Stem Cell Biology Duke-NUS Medical School Singapore Singapore Programme in Cancer and Stem Cell Biology Centre for Computational Biology Duke-NUS Medical School Singapore Singapore SingHealth Duke-NUS Institute of Precision Medicine National Heart Centre Singapore Singapore Singapore Cancer Science Institute of Singapore National University of Singapore Singapore Singapore Institute of Molecular and Cell Biology Singapore Singapore Laboratory of Cancer Epigenome Division of Medical Science National Cancer Centre Singapore Singapore Singapore Duke-NUS Medical School Singapore Singapore Human Genome Sequencing Center Baylor College of Medicine Houston TX USA Dan L. Duncan Cancer Center Baylor College of Medicine Houston TX USA Department of Molecular and Human Genetics Baylor College of Medicine Houston TX USA Genome Integrity and Structural Biology Laboratory National Ins

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Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer (Dec, 10.1038/s41467-019-13824-9, 2022)

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NATURE COMMUNICATIONS 2022年第1期13卷 1-1页

作者： Sieverling, Lina Hong, Chen Koser, Sandra D. Ginsbach, Philip Kleinheinz, Kortine Hutter, Barbara Braun, Delia M. Cortes-Ciriano, Isidro Xi, Ruibin Kabbe, Rolf Park, Peter J. Eils, Roland Schlesner, Matthias Brors, Benedikt Rippe, Karsten Jones, David T. W. Feuerbach, Lars Division of Applied Bioinformatics German Cancer Research Center (DKFZ) 69120 Heidelberg Germany Faculty of Biosciences Heidelberg University 69120 Heidelberg Germany Division of Applied Bioinformatics German Cancer Research Center (DKFZ) Heidelberg Germany Faculty of Biosciences Heidelberg University Heidelberg Germany Division of Theoretical Bioinformatics German Cancer Research Center (DKFZ) 69120 Heidelberg Germany Department for Bioinformatics and Functional Genomics Institute for Pharmacy and Molecular Biotechnology (IPMB) and BioQuant 69120 Heidelberg Germany Division of Theoretical Bioinformatics German Cancer Research Center (DKFZ) Heidelberg Germany Institute of Pharmacy and Molecular Biotechnology and BioQuant Heidelberg University Heidelberg Germany German Cancer Consortium (DKTK) Heidelberg Germany National Center for Tumor Diseases (NCT) Heidelberg Heidelberg Germany Heidelberg Center for Personalized Oncology (DKFZ-HIPO) German Cancer Research Center (DKFZ) Heidelberg Germany German Cancer Consortium (DKTK) German Cancer Research Center (DKFZ) Heidelberg Germany Division of Chromatin Networks German Cancer Research Center (DKFZ) and BioQuant 69120 Heidelberg Germany Department of Biomedical Informatics Harvard Medical School Boston Massachusetts 02115 USA Department of Chemistry Centre for Molecular Science Informatics University of Cambridge Cambridge CB2 1EW UK Ludwig Center at Harvard Medical School Boston Massachusetts 02115 USA Department of Biomedical Informatics Harvard Medical School Boston MA USA Department of Chemistry Centre for Molecular Science Informatics University of Cambridge Cambridge UK Ludwig Center at Harvard Medical School Boston MA USA School of Mathematical Sciences and Center for Statistical Science Peking University Beijing 100871 China Heidelberg University Heidelberg Germany New BIH Digital Health Center Berlin Institute of Health (BIH) and Charité - Universitätsmedizin Berlin Berlin Germany Bioi

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