检索结果-内蒙古大学图书馆

The generation challenge programme platform: Semantic standards and workbench for crop science

International Journal of Plant Genomics 2008年第1期2008卷 369601页

作者： Bruskiewich, Richard Senger, Martin Davenport, Guy Ruiz, Manuel Rouard, Mathieu Hazekamp, Tom Takeya, Masaru Doi, Koji Satoh, Kouji Costa, Marcos Simon, Reinhard Balaji, Jayashree Akintunde, Akinnola Mauleon, Ramil Wanchana, Samart Shah, Trushar Anacleto, Mylah Portugal, Arllet Ulat, Victor Jun Thongjuea, Supat Braak, Kyle Ritter, Sebastian Dereeper, Alexis Skofic, Milko Rojas, Edwin Martins, Natalia Pappas, Georgios Alamban, Ryan Almodiel, Roque Barboza, Lord Hendrix Detras, Jeffrey Manansala, Kevin Mendoza, Michael Jonathan Morales, Jeffrey Peralta, Barry Valerio, Rowena Zhang, Yi Gregorio, Sergio Hermocilla, Joseph Echavez, Michael Yap, Jan Michael Farmer, Andrew Schiltz, Gary Lee, Jennifer Casstevens, Terry Jaiswal, Pankaj Meintjes, Ayton Wilkinson, Mark Good, Benjamin Wagner, James Morris, Jane Marshall, David Collins, Anthony Kikuchi, Shoshi Metz, Thomas McLaren, Graham Van Hintum, Theo Crop Research Informatics Laboratory International Rice Research Institute (IRRI) DAPO Box 7777 Metro Manila Philippines Crop Research Informatics Laboratory International Maize and Wheat Improvement Center (CIMMYT) DF 06600 Mexico Apdo. Postal 6-641 Mexico Centre International de Recherche Agronomique Pour le Développement (CIRAD) 34398 Montpellier Cedex 5 Avenue Agropolis France Bioversity International 00057 Maccarese (Fiumicino) Rome Via dei Tre Denari 472/a Italy National Institute for Agrobiological Sciences (NIAS) Tsukuba Ibaraki 305-8602 Kannondai 2-1-2 Japan Empresa Brasileira de Pesquisa Agropecuaria (EMBRAPA) Brasilia DF 70770-900 Parque Estaçao Biologia Final W5 Norte Brazil Centro Internacional de la Papa (CIP) Lima 12 Avenida La Molina 1895 La Molina Peru International Crops Research Institute for the Semi-Arid Tropics Patancheru Andhra Pradesh 502324 India International Center for Agricultural Research in the Dry Areas Aleppo P.O. Box 5466 Syrian Arab Republic National Center for Genetic Engineering and Biotechnology 113 Thailand Science Park Klong Luang Pathumthani 12120 Phahonyothin Road Klong 1 Thailand Institute of Computer Science College of Arts and Sciences University of the Philippines Los Banos Laguna 4031 Philippines Department of Computer Science University of the Philippines Melchor Hall Diliman Quezon City 1101 Philippines National Center for Genome Resources Santa Fe NM 87505 2935 Rodeo Park Drive East United States Scottish Crop Research Institute Invergowrie Dundee DD2 5DA United Kingdom Department of Plant Breeding Cornell University Ithaca NY 14853 United States African Centre for Gene Technologies Lynnwood Ridge 0040 P.O. Box 75011 South Africa Department of Medical Genetics Faculty of Medicine University of British Columbia Vancouver BC V6T 1Z3 Canada School of Computing Science Simon Fraser Universtiy Burnaby BC V5A 1S6 8888 University Drive Canada Bioinformatics Graduate Program Genome Sciences Centre BC

The Generation Challenge programme (GCP) is a global crop research consortium directed toward crop improvement through the application of comparative biology and genetic resources characterization to plant breeding. A key consortium research activity is the development of a GCP crop bioinformatics platform to support GCP research. This platform includes the following: (i) shared, public platform-independent domain models, ontology, and data formats to enable interoperability of data and analysis flows within the platform;(ii) web service and registry technologies to identify, share, and integrate information across diverse, globally dispersed data sources, as well as to access high-performance computational (HPC) facilities for computationally intensive, high-throughput analyses of project data;(iii) platform-specific middleware reference implementations of the domain model integrating a suite of public (largely open-access/-source) databases and software tools into a workbench to facilitate biodiversity analysis, comparative analysis of crop genomic data, and plant breeding decision making.

关键词：

来源：评论

学校读者我要写书评

暂无评论

[Symposium of the Process of Fertilization — From Sex Determination to Epigenetics]

引用

Zoological Science 2005年第12期22卷 1380-1382页

作者： Manabu Yoshida Midori Matsumoto Noritaka Hirohashi Keiichiro Kyozuka Yayoi Obata Qiong Wu Takuya Kumagai Manabu Kawahara Hidehiko Ogawa Tomohiro Kono Yoshiakira Kanai Misaki Marine Biological Station Graduate School of Science The University of Tokyo Department of Biosciences and Informatics Faculty of Science and Technology Keio University Genetic Counseling Program Graduate School of Humanities and Sciences Ochanomizu University Research Center for Marine Biology Asamushi Graduate School of Life Science Tohoku University Department of BioScience Tokyo University of Agriculture / BRAIN Department of Veterinary Anatomy The University of Tokyo

来源：评论

学校读者我要写书评

暂无评论

A max min ant system applied to the capacitated clustering problem

A max min ant system applied to the capacitated clustering p...

引用

IEEE Workshop on Machine Learning for Signal Processing

作者： F.O. de Franca F.J. Von Zuben L. Nunes de Castro DCA/FEEC/Unicamp Univ. Estadual de Campinas DCA/FEEC/Unicamp State University of Campinas (Unicamp) Campinas/SP Brazil Research and Graduate Program on Informatics Catholic University of Santos (UniSantos) Santos/SP Brazil

This work introduces a modified max min ant system (MMAS) designed to solve the capacitated clustering problem (CCP). Some improvements on the original MMAS algorithm are proposed, such as the use of a density model on the information heuristic and a local search adapted from the uncapacitated p-medians problem. Also the MMAS ability to deal with large scale instances is improved by means of a new proposal for the pheromone updating rule. Some simulations are performed using instances available from the literature, for benchmarking purposes. As a practical application, given a hypothetical demand proportional to the number of inhabitants of the 186 most populated Brazilian cities, the optimal allocation for a varied number of clustering centers is properly determined by the proposed algorithm, with a superior performance when compared with the original MMAS algorithm

关键词： Clustering algorithms Electronic mail Proposals informatics Large-scale systems Cities and towns Mining industry Data mining Pattern recognition Vehicles

来源：评论

学校读者我要写书评

暂无评论

A quantitative analysis of research publications in physical therapy journals - Author response

引用

PHYSICAL THERAPY 2003年第2期83卷 133-133页

作者： Miller, PA Haynes, RB PA Miller PT MHSc is Assistant Clinical Professor School of Rehabilitation Science McMaster University Hamilton Ontario Canada and Chief of Physiotherapy Practice Hamilton Health Sciences Hamilton Ontario Canada. When this article was written she was a graduate student in the Health Research Methodology Program at McMaster University. KA McKibbon BSc MLS is currently on leave from the Department of Clinical Epidemiology and Biostatistics McMaster University for PhD studies at the Centre for Biomedical Informatics University of Pittsburgh Pittsburgh Pa RB Haynes MD PhD is Professor of Clinical Epidemiology and Medicine McMaster University. He is Editor of ACP Journal Club

Background and *** physical therapists depend on their professional journals for high-quality evidence. The purpose of this study was to evaluate the rigor of research and review articles in 4 national physical therapy *** and *** articles in 6 consecutive issues of theAustralian Journal of Physiotherapy,Physical Therapy,Physiotherapy, andPhysiotherapy Canada, published between January 2000 and June 2001 (N=179), were reviewed. One trained reviewer identified the type and purpose of each article and assessed the rigor of treatment and review articles according to explicit *** majority of articles reviewed were original studies (56%). The majority of the research articles that dealt with human health care (66%) addressed topics that were not directly applicable to the provision of patient care such as measurement topics and studies on subjects without identified pathologies or impairments. Of the 179 journal articles, 19 met the standards for rigor (11%). The majority of these articles dealt with treatment. The pass rate per journal was as follows:Australian Journal of Physiotherapy, 10% (4/42);Physical Therapy, 15% (7/47);Physiotherapy, 12% (4/34); andPhysiotherapy Canada, 7% (4/56).*** such a small percentage of articles in these professional journals were identified as having direct application to patient care, physical therapists should attempt to access other sources of information to find additional high-quality evidence. A larger sample with a greater number of issues per journal may have yielded different results and indicated different trends, and further research appears to be warranted.

关键词： Clinical research Evidence-based practice Publications and audiovisual materials

来源：评论

学校读者我要写书评

暂无评论

Contributory presentations/posters

引用

Journal of Biosciences 1999年第1期24卷 33-198页

作者： N. Manoj V. R. Srinivas A. Surolia M. Vijayan K. Suguna R. Ravishankar R. Schwarzenbacher K. Zeth Diederichs G. M. Kostner A. Gries P. Laggner R. Prassl Madhusudan Pearl Akamine Nguyen-huu Xuong Susan S. Taylor M. Bidva Sagar K. Saikrishnan S. Roy K. Purnapatre P. Handa U. Varshney B. K. Biswal N. Sukumar J. K. Mohana Rao A. Johnson Vasantha Pattabhi S. Sri Krishna Mira Sastri H. S. Savithri M. R. N. Murthy Bindu Pillai Kannan M. V. Hosur Mukesh Kumar Swati Patwardhan K. K. Kannan B. Padmanabhaa S. Sasaki-Sugio M. Nukaga T. Matsuzaki S. Karthikevan S. Sharma A. K. Sharma M. Paramasivam P. Kumar J. A. Khan S. Yadav A. Srinivasan T. P. Singh S. Gourinath Neelima Alam A. Srintvasan Vikas Chandra Punit Kaur Ch. Betzel S. Ghosh A. K. Bera S. Bhattacharya S. Chakraborty A. K. Pal B. P. Mukhopadhyay I. Dey U. Haldar Asok Baneriee Jozef Sevcik Adriana Solovicova K. Sekar M. Sundaralingam N. Genov Dong-cai Liang Tao Jiang Ji-ping Zhang Wen-rui Chang Wolfgang Jahnke Marcel Blommers S. C. Panchal R. V. Hosur Bindu Pillay Puniti Mathur S. Srivatsun Ratan Mani Joshi N. R. Jaganathan V. S. Chauhan H. S. Atreya S. C. Sahu K. V. R. Chary Girjesh Govil Elisabeth Adjadj Éric Quinjou Nadia Izadi-Pruneyre Yves Blouquit Joël Mispelter Bernadette Heyd Guilhem Lerat Philippe Milnard Michel Desmadreil Y. Lin B. D. Nageswara Rao Vidva Raghunathan Mei H. Chau Prashant Pesais Sudha Srivastava Evans Coutinho Anil Saran Leizl F. Sapico Jayson Gesme Herbert Lijima Raymond Paxton Thamarapu Srikrishnan C. R. Grace G. Nagenagowda A. M. Lynn Sudha M. Cowsik Sarata C. Sahu S. Chauhan A. Bhattacharya G. Govil Anil Kumar Maurizio Pellecchia Erik R. P. Zuiderweg Keiichi Kawano Tomoyasu Aizawa Naoki Fujitani Yoichi Hayakawa Atsushi Ohnishi Tadayasu Ohkubo Yasuhiro Kumaki Kunio Hikichi Katsutoshi Nitta V. Rani Parvathy R. M. Kini Takumi Koshiba Yoshihiro Kobashigawa Min Yao Makoto Demura Astushi Nakagawa Isao Tanaka Kunihiro Kuwajima Jens Linge Seán O. Donoghue Michael Nilges G. Chakshusmathi Girish S. Ratnaparkhi P. K. Madhu R. Varadarajan C. Tetreau Molecular Biophysics Unit Indian Institute of Science Bangalore India Austrian Academy of Sciences Institute of Biophysics and X-ray Structure Research Graz Austria Faculty of Biology University of Konstanz Germany Institute of Medical Biochemistry University of Graz Austria Howard Huges Medical Institute Department of Chemistry & Biochemistry University of California La Jolla USA Department of Chemistry & Biochemistry University of California San Diego La Jolla USA Molecular Biophysics Unit India Department of Microbiology &Cell Biology Indian Institute of Science Bangalore India Macromolecular Structure Laboratory NCI - Frederick Cancer Research and Development Center ABL - Basic Research Program Frederick USA Department of Crystallography and Biophysics University of Madras Chennai Biochemistry Department Indian Institute of Science Bangalore India Condensed Matter Physics Division B.A.R.C. Trombay Mumbai Condensed Matter Physics Division Bhabha Atomic Research Centre Trombay Mumbai IMCB The University of Tokyo Tokyo Japan Mitsubishi Chemical Corporation Yokohama Research Center Yokohama Japan Faculty of Pharmaceutical Sciences Chiba University Chiba Japan Department of Biophysics All India Institute of Medical Sciences New Delhi India Department of Biophysics All India Institute of Medical sciences New Delhi India Institüt Physiologische Chemie Hamburg Germany Biophysics Department Bose Institute Calcutta India Slovak Academy of Sciences Institute of Molecular Biology Bratislava Slovakia Indian Institute of Science Bioinformatics Centre Bangalore Departments of Chemistry and Biochemistry Biological Macromolecular Structure Center USA Bulgarian Academy of Sciences Institute of Organic Chemistry Sofia Bulgaria Chinese Academy of Sciences Institute of Biophysics Beijing China Novartis Pharma AG Preclinical Research Basel Switzerland Department of Chemical Sciences Tata Institute of Fundamental Research Mumbai India Solid State Physics Div

来源：评论

学校读者我要写书评

暂无评论

Challenges and Opportunities for Developing More Generalizable Polygenic Risk Scores

引用

Biomedical Data Science 1000年第1期5卷 293-320页

作者： Ying Wang Kristin Tsuo Masahiro Kanai Benjamin M. Neale Alicia R. Martin 2Stanley Center for Psychiatric Research and Program in Medical and Population Genetics Broad Institute of Harvard and MIT Cambridge Massachusetts USA 1Analytic and Translational Genetics Unit Massachusetts General Hospital Boston Massachusetts USA email: armartin@*** 3Biological and Biomedical Sciences Harvard Medical School Boston Massachusetts USA 4Department of Biomedical Informatics Harvard Medical School Boston Massachusetts USA 5Department of Statistical Genetics Osaka University Graduate School of Medicine Suita Japan

Polygenic risk scores (PRS) estimate an individual's genetic likelihood of complex traits and diseases by aggregating information across multiple genetic variants identified from genome-wide association studies. PRS can predict a broad spectrum of diseases and have therefore been widely used in research settings. Some work has investigated their potential applications as biomarkers in preventative medicine, but significant work is still needed to definitively establish and communicate absolute risk to patients for genetic and modifiable risk factors across demographic groups. However, the biggest limitation of PRS currently is that they show poor generalizability across diverse ancestries and cohorts. Major efforts are underway through methodological development and data generation initiatives to improve their generalizability. This review aims to comprehensively discuss current progress on the development of PRS, the factors that affect their generalizability, and promising areas for improving their accuracy, portability, and implementation.

关键词： polygenic risk scores (PRS) genetic risk prediction diverse ancestry populations PRS generalizability clinical translation of PRS

来源：评论

学校读者我要写书评

暂无评论

Erratum: Challenges and Opportunities for Developing More Generalizable Polygenic Risk Scores

引用

Biomedical Data Science 1000年第1期

来源：评论

学校读者我要写书评

暂无评论

New Tools for Lineage Tracing in Cancer In Vivo

引用

Cancer Biology 1000年第1期7卷 111-129页

作者： Matthew G. Jones Dian Yang Jonathan S. Weissman 2Department of Cellular and Molecular Pharmacology University of California San Francisco San Francisco California USA 1Whitehead Institute for Biomedical Research Howard Hughes Medical Institute David H. Koch Institute for Integrative Cancer Research and Department of Biology Massachusetts Institute of Technology Cambridge Massachusetts USA email: weissman@wi.mit.edudyang@wi.mit.edu 4Center for Computational Biology University of California Berkeley Berkeley California USA 5Center for Personal Dynamic Regulomes Stanford University School of Medicine Stanford California USA 3Biological and Medical Informatics Graduate Program and Integrative Program in Quantitative Biology University of California San Francisco San Francisco California USA

During tumor evolution, cancer cells can acquire the ability to proliferate, invade neighboring tissues, evade the immune system, and spread systemically. Tracking this process remains challenging, as many key events occur stochastically and over long times, which could be addressed by studying the phylogenetic relationships among cancer cells. Several lineage tracing approaches have been developed and employed in many tumor models and contexts, providing critical insights into tumor evolution. Recent advances in single-cell lineage tracing have greatly expanded the resolution, scale, and readout of lineage tracing toolkits. In this review, we provide an overview of static lineage tracing methods, and then focus on evolving lineage tracing technologies that enable reconstruction of tumor phylogenies at unprecedented resolution. We also discuss in vivo applications of these technologies to profile subclonal dynamics, quantify tumor plasticity, and track metastasis. Finally, we highlight outstanding questions and emerging technologies for building comprehensive cancer evolution roadmaps.

关键词： cancer biology lineage tracing single-cell analysis tumor evolution cancer metastasis cell barcoding

来源：评论

学校读者我要写书评

暂无评论

建议与咨询留下您的常用邮箱和电话号码，以便我们向您反馈解决方案和替代方法

时间限定

文献类型

馆藏选择

核心期刊

语言

文献类型

帮助

文字说明：

检索规则说明：

检索范例：

分类表

所选分类

限定检索结果

文献类型

馆藏范围

日期分布

学科分类号

主题

机构

作者

语言

请选择保存的检索档案：

请选择收藏分类：

通借通还

建议与咨询 留下您的常用邮箱和电话号码，以便我们向您反馈解决方案和替代方法

时间限定

文献类型

馆藏选择

核心期刊

语言

文献类型

帮助

文字说明：

检索规则说明：

检索范例：

分类表

所选分类

限定检索结果

文献类型

馆藏范围

日期分布

学科分类号

主题

机构

作者

语言

请选择保存的检索档案： 新增检索档案 确定 取消

请选择收藏分类： 新增自定义分类 确定 取消

通借通还

建议与咨询留下您的常用邮箱和电话号码，以便我们向您反馈解决方案和替代方法

请选择保存的检索档案：

请选择收藏分类：