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arXiv 2022年

作者： Zheng, Kaizhong Yu, Shujian Li, Baojuan Jenssen, Robert Chen, Badong National Key Laboratory of Human-Machine Hybrid Augmented Intelligence National Engineering Research Center for Visual Information and Applications Institute of Artificial Intelligence and Robotics Xi’an Jiaotong University Xi’an China The Department of Computer Science Vrije Universiteit Amsterdam Amsterdam and the Machine Learning Group UiT - Arctic University of Norway Tromsø Norway The Machine Learning Group UiT - Arctic University of Norway Tromsø Norway The School of Biomedical Engineering Fourth Military Medical University Xi’an China

Developing a new diagnostic models based on the underlying biological mechanisms rather than subjective symptoms for psychiatric disorders is an emerging consensus. Recently, machine learning-based classifiers using functional connectivity (FC) for psychiatric disorders and healthy controls are developed to identify brain markers. However, existing machine learning-based diagnostic models are prone to over-fitting (due to insufficient training samples) and perform poorly in new test environment. Furthermore, it is difficult to obtain explainable and reliable brain biomarkers elucidating the underlying diagnostic decisions. These issues hinder their possible clinical applications. In this work, we propose BrainIB, a new graph neural network (GNN) framework to analyze functional magnetic resonance images (fMRI), by leveraging the famed information Bottleneck (IB) principle. BrainIB is able to identify the most informative edges in the brain (i.e., subgraph) and generalizes well to unseen data. We evaluate the performance of BrainIB against 3 baselines and 7 state-of-the-art brain network classification methods on three psychiatric datasets and observe that our BrainIB always achieves the highest diagnosis accuracy. It also discovers the subgraph biomarkers which are consistent to clinical and neuroimaging findings. The source code and implementation details of BrainIB are freely available at GitHub repository (https://***/SJYuCNEL/brain-and-information-Bottleneck/). Copyright © 2022, The Authors. All rights reserved.

关键词： Graph neural networks

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Distractor-aware fast tracking via dynamic convolutions and MOT philosophy

arXiv

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arXiv 2021年

作者： Zhang, Zikai Zhong, Bineng Zhang, Shengping Tang, Zhenjun Liu, Xin Zhang, Zhaoxiang Guangxi Key Lab of Multi-Source Information Mining and Security Guangxi Normal University Department of Computer Science and Technology Huaqiao University Harbin Institute of Technology Peng Cheng Laboratory Beijing Seetatech Technology Cas and Univ. of Chinese Academy of Sciences and Centre for Artificial Intelligence and Robotics Institute of Automation Hkisi Cas

A practical long-term tracker typically contains three key properties, i.e. an efficient model design, an effective global re-detection strategy and a robust distractor awareness mechanism. However, most state-of-the-art long-term trackers (e.g., Pseudo and re-detecting based ones) do not take all three key properties into account and therefore may either be time-consuming or drift to distractors. To address the issues, we propose a two-task tracking framework (named DMTrack), which utilizes two core components (i.e., one-shot detection and re-identification (re-id) association) to achieve distractor-aware fast tracking via Dynamic convolutions (d-convs) and Multiple object tracking (MOT) philosophy. To achieve precise and fast global detection, we construct a lightweight one-shot detector using a novel dynamic convolutions generation method, which provides a unified and more flexible way for fusing target information into the search field. To distinguish the target from distractors, we resort to the philosophy of MOT to reason distractors explicitly by maintaining all potential similarities' tracklets. Benefited from the strength of high recall detection and explicit object association, our tracker achieves state-of-the-art performance on the LaSOT, Ox-UvA, TLP, VOT2018LT and VOT2019LT benchmarks and runs in real-time (3x faster than comparisons)1. Copyright © 2021, The Authors. All rights reserved.

关键词： Convolution

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Multi-Class Segmentation of Aortic Branches and Zones in Computed Tomography Angiography: The AortaSeg24 Challenge

arXiv

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arXiv 2025年

作者： Imran, Muhammad Krebs, Jonathan R. Sivaraman, Vishal Balaji Zhang, Teng Kumar, Amarjeet Ueland, Walker R. Fassler, Michael J. Huang, Jinlong Sun, Xiao Wang, Lisheng Shi, Pengcheng Rokuss, Maximilian Baumgartner, Michael Kirchhof, Yannick Maier-Hein, Klaus H. Isensee, Fabian Liu, Shuolin Han, Bing Nguyen, Bong Thanh Shin, Dong-Jin Ji-Woo, Park Choi, Mathew Uhm, Kwang-Hyun Ko, Sung-Jea Lee, Chanwoong Chun, Jaehee Kim, Jin Sung Zhang, Minghui Zhang, Hanxiao You, Xin Gu, Yun Pan, Zhaohong Liu, Xuan Liang, Xiaokun Tiefenthaler, Markus Almar-Munoz, Enrique Schwab, Matthias Kotyushev, Mikhail Epifanov, Rostislav Wodzinski, Marek Müller, Henning Qayyum, Abdul Mazher, Moona Niederer, Steven A. Wang, Zhiwei Yang, Kaixiang Ren, Jintao Korreman, Stine Sofia Gao, Yuchong Zeng, Hongye Zheng, Haoyu Zheng, Rui Yue, Jinghua Zhou, Fugen Liu, Bo Cosman, Alexander Liang, Muxuan Zhao, Chang Upchurch, Gilbert R. Ma, Jun Zhou, Yuyin Cooper, Michol A. Shao, Wei Department of Medicine University of Florida GainesvilleFL32611 United States Department of Surgery University of Florida GainesvilleFL32611 United States Department of Electrical and Computer Engineering University of Florida GainesvilleFL32611 United States Department of Computer Information Science and Engineering University of Florida GainesvilleFL32611 United States Shanghai Jiao Tong University Shanghai China Electronic & Information Engineering School Harbin Institute of Technology [Shenzhen Shenzhen China Division of Medical Image Computing German Cancer Research Center [DKFZ Heidelberg Germany CO. LTD Beijing China MedAI Seoul Korea Republic of Korea University Seoul Korea Republic of Department of Radiation Oncology Yonsei Cancer Center Heavy Ion Therapy Research Institute Yonsei University College of Medicine Seoul Korea Republic of Institute of Medical Robotics Shanghai Jiao Tong University Shanghai China Shenzhen Institute of Advanced Technology Chinese Academy of Sciences Shenzhen518055 China Medical University of Innsbruck Innsbruck Austria Novosibirsk State University Novosibirsk Russia AGH University of Krakow Krakow Poland Sierre Switzerland University of Geneva Geneva Switzerland The Sense Innovation and Research Center Sion Switzerland National Heart and Lung Institute Faculty of Medicine Imperial College London London United Kingdom Wuhan National Laboratory for Optoelectronics Huazhong University of Science and Technology Hubei Wuhan China Aarhus University Department of Clinical Medicine Nordre Palle Juul-Jensens Blvd. 11 Aarhus8200 Denmark Shanghaitech University Pudong Shanghai China Image Processing Center Beihang University Beijing China Department of Computer Science and Engineering University of California Santa CruzCA95064 United States Department of Biostatistics University of Florida GainesvilleFL32611 United States University Health Network ON Canada Agronomy Department University of F

Multi-class segmentation of the aorta in computed tomography angiography (CTA) scans is essential for diagnosing and planning complex endovascular treatments for patients with aortic dissections. However, existing methods reduce aortic segmentation to a binary problem, limiting their ability to measure diameters across different branches and zones. Furthermore, no open-source dataset is currently available to support the development of multi-class aortic segmentation methods. To address this gap, we organized the AortaSeg24 MICCAI Challenge, introducing the first dataset of 100 CTA volumes annotated for 23 clinically relevant aortic branches and zones. This dataset was designed to facilitate both model development and validation. The challenge attracted 121 teams worldwide, with participants leveraging state-of-the-art frameworks such as nnU-Net and exploring novel techniques, including cascaded models, data augmentation strategies, and custom loss functions. We evaluated the submitted algorithms using the Dice Similarity Coefficient (DSC) and Normalized Surface Distance (NSD), highlighting the approaches adopted by the top five performing teams. This paper presents the challenge design, dataset details, evaluation metrics, and an in-depth analysis of the top-performing algorithms. The annotated dataset, evaluation code, and implementations of the leading methods are publicly available to support further research. All resources can be accessed at https://***. © 2025, CC BY-NC-SA.

关键词： computerized tomography

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Depth-Awareness in a System for Mixed-Reality Aided Surgical Procedures 15th

Depth-Awareness in a System for Mixed-Reality Aided Surgical...

引用

15th International Conference on Intelligent Computing, ICIC 2019

作者： Sylos Labini, Mauro Gsaxner, Christina Pepe, Antonio Wallner, Juergen Egger, Jan Bevilacqua, Vitoantonio Institute for Computer Graphics and Vision Faculty of Computer Science and Biomedical Engineering Graz University of Technology Graz Austria Computer Algorithms for Medicine Laboratory Graz Austria Department of Electrical and Information Engineering Polytechnic University of Bari Bari Italy Department of Oral and Maxillofacial Surgery Medical University of Graz Graz Austria

ISBN: (纸本)9783030267650

computer-assisted surgery is a trending topic in research, with many different approaches which aim at supporting surgeons in the operating room. Existing surgical planning and navigation solutions are often considered to be distracting, unintuitive or hard to interpret. In this work, we address this issue with an approach based on mixed reality devices like Microsoft HoloLens. We assess the depth sensing capabilities of Microsoft HoloLens, and the potential benefit they could bring to computer-assisted surgery applications. © 2019, Springer Nature Switzerland AG.

关键词： Mixed reality

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Unmasking Biases and Navigating Pitfalls in the Ophthalmic Artificial Intelligence Lifecycle: A Review

arXiv

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arXiv 2023年

作者： Nakayama, Luis Filipe Matos, João Quion, Justin Novaes, Frederico Mitchell, William Greig Mwavu, Rogers Hung, Ju-Yi Ji dy Santiago, Alvina Pauline Phanphruk, Warachaya Cardoso, Jaime S. Celi, Leo Anthony Laboratory for Computational Physiology Institute for Medical Engineering and Science Massachusetts Institute of Technology CambridgeMA United States Department of Ophthalmology São Paulo Federal University SP São Paulo Brazil Porto Portugal Porto Portugal Department of Ophthalmology Royal Victorian Eye and Ear Hospital Melbourne Australia Department of Information Technology Mbarara University of Science and Technology Mbarara Uganda Department of Ophthalmology Byers Eye Institute StanfordCA United States Department of Computer Science and Information Engineering National Taiwan University Taiwan University of the Philippines Manila College of Medicine Manila Philippines Pediatric Ophthalmology Department of Ophthalmology and Visual Sciences Philippine General Hospital Manila Philippines Pediatric Ophthalmology Eye and Vision Institute The Medical City Manila Philippines Pediatric Ophthalmology International Eye Institute St Luke’s Medical Center Quezon City Philippines Department of Ophthalmology Faculty of Medicine Khon Kaen University Khon Kaen Thailand Harvard TH Chan School of Public Health Department of Biostatistics BostonMA United States Beth Israel Deaconess Medical Center Department of Medicine BostonMA United States

Over the past two decades, exponential growth in data availability, computational power, and newly available modeling techniques has led to an expansion in interest, investment, and research in Artificial Intelligence (AI) applications. Ophthalmology is one of many fields that seek to benefit from AI given the advent of telemedicine screening programs and the use of ancillary imaging. However, before AI can be widely deployed, further work must be done to avoid the pitfalls within the AI lifecycle. This review article breaks down the AI lifecycle into seven steps: data collection;defining the model task;data pre-processing and labeling;model development;model evaluation and validation;deployment;and finally, post-deployment evaluation, monitoring, and system recalibration and delves into the risks for harm at each step and strategies for mitigating them. © 2023, CC BY-NC-ND.

关键词： Artificial intelligence

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AutoPET Challenge: Combining nn-Unet with Swin UNETR Augmented by Maximum Intensity Projection Classifier

arXiv

引用

arXiv 2022年

作者： Heiliger, Lars Marinov, Zdravko Hasin, Max Ferreira, André Fragemann, Jana Pomykala, Kelsey Murray, Jacob Kersting, David Alves, Victor Stiefelhagen, Rainer Egger, Jan Kleesiek, Jens Institute for Ai in Medicine University Hospital Essen Essen Germany University Medicine Essen Essen Germany Institute for Anthropomatics and Robotics Karlsruhe Institute of Technology Karlsruhe Germany Center Algoritmi University of Minho Braga Portugal Computer Algorithms for Medicine Laboratory Graz Austria Department of Nuclear Medicine University Hospital Essen Essen Germany Essen Germany West German Cancer Center Essen Germany HIDSS4Health - Helmholtz Information Data Science School for Health Heidelberg Karlsruhe Germany

Tumor volume and changes in tumor characteristics over time are important biomarkers for cancer therapy. In this context, FDGPET/CT scans are routinely used for staging and re-staging of cancer, as the radiolabeled fluorodeoxyglucose is taken up in regions of high metabolism. Unfortunately, these regions with high metabolism are not specific to tumors and can also represent physiological uptake by normal functioning organs, inflammation, or infection, making detailed and reliable tumor segmentation in these scans a demanding task. This gap in research is addressed by the AutoPET challenge, which provides a public data set with FDG-PET/CT scans from 900 patients to encourage further improvement in this field. Our contribution to this challenge is an ensemble of two state-of-the-art segmentation models, the nn-Unet and the Swin UNETR, augmented by a maximum intensity projection classifier that acts like a gating mechanism. If it predicts the existence of lesions, both segmentations are combined by a late fusion approach. Our solution achieves an average Cross Validation Dice score of 72.12% on patients diagnosed with lung cancer, melanoma, and lymphoma in our cross-validation. Code: https://***/heiligerl/AutoPET-Challenge-Submission. © 2022, CC BY.

关键词： Tumors

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REFUGE2 CHALLENGE: A TREASURE TROVE FOR MULTI-DIMENSION ANALYSIS AND EVALUATION IN GLAUCOMA SCREENING

arXiv

引用

arXiv 2022年

作者： Fang, Huihui Li, Fei Wu, Junde Fu, Huazhu Sun, Xu Son, Jaemin Yu, Shuang Zhang, Menglu Yuan, Chenglang Bian, Cheng Lei, Baiying Zhao, Benjian Xu, Xinxing Li, Shaohua Fumero, Francisco Sigut, José Almubarak, Haidar Bazi, Yakoub Guo, Yuanhao Zhou, Yating Baid, Ujjwal Innani, Shubham Guo, Tianjiao Yang, Jie Orlando, José Ignacio Bogunović, Hrvoje Zhang, Xiulan Xu, Yanwu The REFUGE2 Challenge Australia State Key Laboratory of Ophthalmology Zhongshan Ophthalmic Center Sun Yat-Sen University Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science Guangzhou China Intelligent Healthcare Unit Baidu Inc. Beijing China The Institute of High Performance Computing Agency for Science Technology and Research Singapore Yatiris Group PLADEMA Institute CONICET UNICEN Tandil Argentina Christian Doppler Lab for Artificial Intelligence in Retina Department of Ophthalmology and Optometry Medical University of Vienna Vienna Austria VUNO Inc Seoul Korea Republic of Tencent HealthCare Tencent Shenzhen China Computer Vision Institute College of Computer Science and Software Engineering of Shenzhen University Shenzhen China School of Biomedical Engineering Health Science Center Shenzhen University China Xiaohe Healthcare ByteDance Guangdong Guangzhou510000 China School of Biomedical Engineering Shenzhen University China College of Computer Science & Software Engineering Shenzhen University China Department of Computer Science and Systems Engineering Universidad de La Laguna Spain Saudi Electronic University Saudi Arabia King Saud University Saudi Arabia Institute of Automation Chinese Academy of Sciences Beijing China University of Chinese Academy of Sciences Beijing China SGGS Institute of Engineering and Technology India Institute of Medical Robotics Shanghai Jiao Tong University China Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University China

With the rapid development of artificial intelligence (AI) in medical image processing, deep learning in color fundus photography (CFP) analysis is also evolving. Although there are some open-source, labeled datasets of CFPs in the ophthalmology community, large-scale datasets for screening only have labels of disease categories, and datasets with annotations of fundus structures are usually small in size. In addition, labeling standards are not uniform across datasets, and there is no clear information on the acquisition device. Here we release a multi-annotation, multi-quality, and multi-device color fundus image dataset for glaucoma analysis on an original challenge-Retinal Fundus Glaucoma Challenge 2nd Edition (REFUGE2). The REFUGE2 dataset contains 2000 color fundus images with annotations of glaucoma classification, optic disc/cup segmentation, as well as fovea localization. Meanwhile, the REFUGE2 challenge sets three sub-tasks of automatic glaucoma diagnosis and fundus structure analysis and provides an online evaluation framework. Based on the characteristics of multi-device and multi-quality data, some methods with strong generalizations are provided in the challenge to make the predictions more robust. This shows that REFUGE2 brings attention to the characteristics of real-world multi-domain data, bridging the gap between scientific research and clinical application. © 2022, CC BY-NC-ND.

关键词： Color

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Diffusive nonreciprocity and thermal diode

引用

Physical Review B 2021年第1期103卷 014307-014307页

作者： Ying Li Jiaxin Li Minghong Qi Cheng-Wei Qiu Hongsheng Chen Interdisciplinary Center for Quantum Information State Key Laboratory of Modern Optical Instrumentation College of Information Science and Electronic Engineering Zhejiang University Hangzhou 310027 China ZJU-Hangzhou Global Science and Technology Innovation Center Key Lab. of Advanced Micro/Nano Electronic Devices & Smart Systems of Zhejiang Zhejiang University Hangzhou 310027 China International Joint Innovation Center ZJU-UIUC Institute The Electromagnetics Academy at Zhejiang University Zhejiang University Haining 314400 China Department of Electrical and Computer Engineering National University of Singapore Singapore 117583 Singapore State Key Laboratory of Robotics and System Harbin Institute of Technology Harbin 150001 China

Wave propagation and diffusion in linear materials preserve local reciprocity in terms of a symmetric Green's function. For wave propagations, the relation between the fields entering and leaving a system is more relevant than the detailed information about the fields inside it. In such cases, the global reciprocity of the scattering off a system through several ports is more important, which is defined as the symmetric transmission between the scattering channels. When a two-port system supports nonreciprocal (electromagnetic, acoustic) wave propagation, it is a (optical, phonon) diode directly following the definition. However, to date no concrete definition or discussion has been made on the global reciprocity of diffusive processes through a multiple-port system. It thus remains unclear what are the differences and relations between the three concepts, namely, local nonreciprocity, global nonreciprocity, and diode effect in diffusion. Here, we provide theoretical analysis on the frequency-domain Green's function and define the global reciprocity of heat diffusion through a two-port system, which has a different setup from that of a thermal diode. We further prove the equivalence between a heat transfer system with broken steady-state global reciprocity and a thermal diode, assuming no temperature-dependent heat generation. The validities of some typical mechanisms in breaking the diffusive reciprocity and making a thermal diode have been discussed. Our results set a general background for future studies on symmetric and asymmetric diffusive processes.

关键词： Diffusion Heat transfer Metamaterials Diodes Green's function methods

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Shape-aware Meta-learning for Generalizing Prostate MRI Segmentation to Unseen Domains

arXiv

引用

arXiv 2020年

作者： Liu, Quande Dou, Qi Heng, Pheng Ann Department of Computer Science and Engineering Chinese University of Hong Kong Hong Kong T Stone Robotics Institute Chinese University of Hong Kong Hong Kong Guangdong Provincial Key Laboratory of Computer Vision and Virtual Reality Technology Shenzhen Institutes of Advanced Technology Chinese Academy of Sciences Shenzhen China

Model generalization capacity at domain shift (e.g., various imaging protocols and scanners) is crucial for deep learning methods in real-world clinical deployment. This paper tackles the challenging problem of domain generalization, i.e., learning a model from multi-domain source data such that it can directly generalize to an unseen target domain. We present a novel shape-aware meta-learning scheme to improve the model generalization in prostate MRI segmentation. Our learning scheme roots in the gradient-based meta-learning, by explicitly simulating domain shift with virtual meta-train and meta-test during training. Importantly, considering the deficiencies encountered when applying a segmentation model to unseen domains (i.e., incomplete shape and ambiguous boundary of the prediction masks), we further introduce two complementary loss objectives to enhance the meta-optimization, by particularly encouraging the shape compactness and shape smoothness of the segmentations under simulated domain shift. We evaluate our method on prostate MRI data from six different institutions with distribution shifts acquired from public datasets. Experimental results show that our approach outperforms many state-of-the-art generalization methods consistently across all six settings of unseen domains4 Copyright © 2020, The Authors. All rights reserved.

关键词： Urology

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Underwater image super-resolution using deep residual multipliers

arXiv

引用

arXiv 2019年

作者： Islam, Md Jahidul Enan, Sadman Sakib Luo, Peigen Sattar, Junaed Interactive Robotics and Vision Laboratory Department of Computer Science and Engineering Minnesota Robotics Institute University of Minnesota Twin Cities United States

We present a deep residual network-based generative model for single image super-resolution (SISR) of underwater imagery for use by autonomous underwater robots. We also provide an adversarial training pipeline for learning SISR from paired data. In order to supervise the training, we formulate an objective function that evaluates the perceptual quality of an image based on its global content, color, and local style information. Additionally, we present USR-248, a large-scale dataset of three sets of underwater images of ‘high’ (640 × 480) and ‘low’ (80 × 60, 160 × 120, and 320 × 240) resolution. USR-248 contains over 7K paired instances in each set of data for supervised training of 2×, 4×, or 8× SISR models. Furthermore, we validate the effectiveness of our proposed model through qualitative and quantitative experiments and compare the results with several state-of-the-art models’ performances. We also analyze its practical feasibility for applications such as scene understanding and attention modeling in noisy visual conditions. Copyright © 2019, The Authors. All rights reserved.

关键词： Large dataset

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