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Drug-Target Interactions Prediction Based on Signed Heterogeneous Graph Neural Networks

Chinese Journal of Electronics 2024年第1期33卷 231-244页

作者： Ming CHEN Yajian JIANG Xiujuan LEI Yi PAN Chunyan JI Wei JIANG College of Information Science and Engineering Hunan Normal University School of Computer Science Shaanxi Normal University Faculty of Computer Science and Control Engineering Shenzhen Institute of Advanced TechnologyChinese Academy of Sciences Computer Science Department BNU-HKBU United International College

Drug-target interactions(DTIs) prediction plays an important role in the process of drug *** computational methods treat it as a binary prediction problem, determining whether there are connections between drugs and targets while ignoring relational types information. Considering the positive or negative effects of DTIs will facilitate the study on comprehensive mechanisms of multiple drugs on a common target, in this work, we model DTIs on signed heterogeneous networks, through categorizing interaction patterns of DTIs and additionally extracting interactions within drug pairs and target protein pairs. We propose signed heterogeneous graph neural networks(SHGNNs), further put forward an end-to-end framework for signed DTIs prediction, called SHGNN-DTI,which not only adapts to signed bipartite networks, but also could naturally incorporate auxiliary information from drug-drug interactions(DDIs) and protein-protein interactions(PPIs). For the framework, we solve the message passing and aggregation problem on signed DTI networks, and consider different training modes on the whole networks consisting of DTIs, DDIs and PPIs. Experiments are conducted on two datasets extracted from Drug Bank and related databases, under different settings of initial inputs, embedding dimensions and training modes. The prediction results show excellent performance in terms of metric indicators, and the feasibility is further verified by the case study with two drugs on breast cancer.

关键词： Drug-target interactions Signed heterogeneous network Link sign prediction Graph neural networks

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Data-driven output regulation control for constrained linear systems

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science China(Information sciences) 2025年第3期68卷 338-353页

作者： Chaoyu XIA Yi DONG Chaoli WANG Shengyuan XU Shanghai Research Institute for Intelligent Autonomous Systems Tongji University College of Electronic and Information Engineering Shanghai Research Institute for Intelligent Autonomous SystemsTongji University Department of Control Science and Engineering School of Optical-Electrical and Computer EngineeringUniversity of Shanghai for Science and Technology Department of Automation Nanjing University of Science and Technology

This study introduces a data-driven approach for state and output feedback control addressing the constrained output regulation problem in unknown linear discrete-time systems. Our method ensures effective tracking performance while satisfying the state and input constraints, even when system matrices are not available. We first establish a sufficient condition necessary for the existence of a solution pair to the regulator equation and propose a data-based approach to obtain the feedforward and feedback control gains for state feedback control using linear programming. Furthermore, we design a refined Luenberger observer to accurately estimate the system state, while keeping the estimation error within a predefined set. By combining output regulation theory, we develop an output feedback control strategy. The stability of the closed-loop system is rigorously proved to be asymptotically stable by further leveraging the concept of λ-contractive sets.

关键词： output regulation constrained system data-driven.

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Inductive Lottery Ticket Learning for Graph Neural Networks

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Journal of computer science & Technology 2024年第6期39卷 1223-1237页

作者： Yong-Duo Sui Xiang Wang Tianlong Chen Meng Wang Xiang-Nan He Tat-Seng Chua School of Data Science University of Science and Technology of ChinaHefei 230027China Department of Electrical and Computer Engineering The University of Texas at AustinAustin 78712U.S.A School of Computer Science and Information Engineering Hefei University of TechnologyHefei 230009China School of Computing National University of SingaporeSingapore

Graph neural networks (GNNs) have gained increasing popularity, while usually suffering from unaffordable computations for real-world large-scale applications. Hence, pruning GNNs is of great need but largely unexplored. The recent work Unified GNN Sparsification (UGS) studies lottery ticket learning for GNNs, aiming to find a subset of model parameters and graph structures that can best maintain the GNN performance. However, it is tailed for the transductive setting, failing to generalize to unseen graphs, which are common in inductive tasks like graph classification. In this work, we propose a simple and effective learning paradigm, Inductive Co-Pruning of GNNs (ICPG), to endow graph lottery tickets with inductive pruning capacity. To prune the input graphs, we design a predictive model to generate importance scores for each edge based on the input. To prune the model parameters, it views the weight’s magnitude as their importance scores. Then we design an iterative co-pruning strategy to trim the graph edges and GNN weights based on their importance scores. Although it might be strikingly simple, ICPG surpasses the existing pruning method and can be universally applicable in both inductive and transductive learning settings. On 10 graph-classification and two node-classification benchmarks, ICPG achieves the same performance level with 14.26%–43.12% sparsity for graphs and 48.80%–91.41% sparsity for the GNN model.

关键词： lottery ticket hypothesis graph neural networks neural network pruning

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A survey on cross-user federated recommendation

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science China(Information sciences) 2025年第4期68卷 7-32页

作者： Enyue YANG Yudi XIONG Wei YUAN Weike PAN Qiang YANG Zhong MING College of Computer Science and Software Engineering Shenzhen University School of Electrical Engineering and Computer Science The University of Queensland WeBank AI Lab WeBank Department of Computer Science and Engineering Hong Kong University of Science and Technology College of Big Data and Internet Shenzhen Technology University Guangdong Laboratory of Artificial Intelligence and Digital Economy (SZ)

Recommender systems are effective in mitigating information overload, yet the centralized storage of user data raises significant privacy concerns. Cross-user federated recommendation(CUFR) provides a promising distributed paradigm to address these concerns by enabling privacy-preserving recommendations directly on user devices. In this survey, we review and categorize current progress in CUFR, focusing on four key aspects: privacy, security, accuracy, and efficiency. Firstly,we conduct an in-depth privacy analysis, discuss various cases of privacy leakage, and then review recent methods for privacy protection. Secondly, we analyze security concerns and review recent methods for untargeted and targeted *** untargeted attack methods, we categorize them into data poisoning attack methods and parameter poisoning attack methods. For targeted attack methods, we categorize them into user-based methods and item-based methods. Thirdly,we provide an overview of the federated variants of some representative methods, and then review the recent methods for improving accuracy from two categories: data heterogeneity and high-order information. Fourthly, we review recent methods for improving training efficiency from two categories: client sampling and model compression. Finally, we conclude this survey and explore some potential future research topics in CUFR.

关键词： cross-user federated recommendation federated recommendation federated learning recommender systems user privacy

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Underwater image enhancement by maximum-likelihood based adaptive color correction and robust scattering removal

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Frontiers of computer science 2023年第2期17卷 209-223页

作者： Bo WANG Zitong KANG Pengwei DONG Fan WANG Peng MA Jiajing BAI Pengwei LIANG Chongyi LI School of Physics and Electronic-Electrical Engineering Ningxia UniversityYinchuan 750021China School of Computer Science and Engineering Nanyang Technological UniversitySingapore 639798Singapore

Underwater images often exhibit severe color deviations and degraded visibility,which limits many practical applications in ocean *** extensive research has been conducted into underwater image enhancement,little of which demonstrates the significant robustness and generalization for diverse real-world underwater *** this paper,we propose an adaptive color correction algorithm based on the maximum likelihood estimation of Gaussian parameters,which effectively removes color casts of a variety of underwater images.A novel algorithm using weighted combination of gradient maps in HSV color space and absolute difference of intensity for accurate background light estimation is proposed,which circumvents the influence of white or bright regions that challenges existing physical model-based *** enhance contrast of resultant images,a piece-wise affine transform is applied to the transmission map estimated via background light ***,with the estimated background light and transmission map,the scene radiance is recovered by addressing an inverse problem of image formation *** experiments reveal that our results are characterized by natural appearance and genuine color,and our method achieves competitive performance with the state-of-the-art methods in terms of objective evaluation metrics,which further validates the better robustness and higher generalization ability of our enhancement model.

关键词： underwater image enhancement adaptive color correction background light estimation

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Quick Hosting Capacity Evaluation Based on Distributed Dispatching for Smart Distribution Network Planning with Distributed Generation

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Journal of Modern Power Systems and Clean Energy 2024年第1期12卷 128-140页

作者： Bing Sun Ruipeng Jing Leijiao Ge Yuan Zeng Shimeng Dong Luyang Hou the School of Electrical and Information Engineering Tianjin UniversityTianjin 300072China State Grid Corporation of China BeijingChina the School of Computer Science(National Pilot Software Engineering School) Beijing University of Posts and TelecommunicationsBeijingChina

The smart distribution network(SDN)is integrat ing increasing distributed generation(DG)and energy storage(ES).Hosting capacity evaluation is important for SDN plan ning with *** and ES are usually invested by users or a third party,and they may form friendly microgrids(MGs)and operate *** centralized dispatching meth od no longer suits for hosting capacity evaluation of SDN.A quick hosting capacity evaluation method based on distributed optimal dispatching is ***,a multi-objective DG hosting capacity evaluation model is established,and the host ing capacity for DG is determined by the optimal DG planning *** steady-state security region method is applied to speed up the solving process of the DG hosting capacity evalua tion ***,the optimal dispatching models are estab lished for MG and SDN respectively to realize the operating *** the distributed dispatching strategy,the dual-side optimal operation of SDN-MGs can be realized by several iterations of power exchange ***,an SDN with four MGs is conducted considering multiple flexible *** shows that the DG hosting capacity of SDN oversteps the sum of the maximum active power demand and the rated branch ***,the annual DG electricity oversteps the maximum active power demand value.

关键词： Smart distribution network(SDN) microgrid hosting capacity multi-objective optimization distributed opti mal dispatching flexible resource

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Enhancing surrogate-assisted evolutionary optimization for medium-scale expensive problems: a two-stage approach with unsupervised feature learning and Q-learning

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Neural Computing and Applications 2024年第25期36卷 15545-15565页

作者： Gong, Yiyun Yu, Haibo Kang, Li Sun, Chaoli Zeng, Jianchao School of Electrical and Control Engineering North University of China Taiyuan030051 China School of Computer Science and Technology North University of China Taiyuan030051 China School of Environment and Safety Engineering North University of China Taiyuan030051 China School of Computer Science and Technology Taiyuan University of Science and Technology Taiyuan030024 China

This paper presents a novel two-stage progressive search approach with unsupervised feature learning and Q-learning (TSLL) to enhance surrogate-assisted evolutionary optimization for medium-scale expensive problems. The method attempts to address the challenges posed by multi-polar and multi-variable coupling properties in such problems. During the iteration, TSLL splits the optimization process into two distinct stages. First, two unsupervised feature learning techniques: principal component analysis (PCA) and Autoencoder, are utilized to improve the representation of potential optimal samples in the solution space. PCA is used for feature reduction, extracting the most important features. On the other hand, Autoencoder focuses on reconstructing features within the medium-scale solution space. To ensure comprehensive exploration of the entire solution space, TSLL employs two distinct surrogate modeling approaches along with Q-learning in the second stage to dynamically select the mutation strategy for the differential evolution operator. Numerous experiments demonstrate the superiority of TSLL over five state-of-the-art surrogate-assisted approaches and two sophisticated evolutionary algorithms including the winner of CEC 2017 on medium-scale benchmark problems and a wind farm layout problem. © The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature 2024.

关键词： Reinforcement learning

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Design and Characterization of High Quality-Factor Inductors for Wireless Systems Compatible With Flexible Large-Area Electronics

IEEE Journal on Flexible Electronics

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IEEE Journal on Flexible Electronics 2024年第6期3卷 234-241页

作者： Ma, Yue Wagner, Sigurd Verma, Naveen Sturm, James C. Princeton University School of Engineering and Applied Science Department of Electrical and Computer Engineering PrincetonNJ08544 United States

Resonant operation, exploiting high quality-factor planar inductors, has recently enabled gigahertz (GHz) applications for large-area electronics (LAE), providing a new technology platform for large-scale and flexible wireless systems. This work first presents the design, analysis, and characterization methodology of flex-compatible large-area planar inductors. Specifically, three distinct radio frequency (RF) inductor characterization methods are experimentally demonstrated and compared, with the most accurate method among them (i.e., S-parameters in a two-port configuration) demonstrating a record-high quality factor of up to 65in the 2.4-GHz frequency band. Enabled by accurate characterization, key inductor design considerations regarding the resistive loss due to inductor's metal traces are then discussed. Finally, a case study of the recently demonstrated LAE resonant switch shows the potential of these high-performance inductors towards large-area and conformal wireless systems for integrated Internet of Things (IoT) and 5G/6G applications. © 2022 IEEE.

关键词： Substrates

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Optimized Distribution Systems Reconfiguration Considering Protection Devices Constraints

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IEEE Transactions on Power Delivery 2025年第3期40卷 1267-1278页

作者： Kahnamouei, Ali Shakeri Lotfifard, Saeed Rostami, Mohammadali The School of Electrical Engineering and Computer Science Washington State University PullmanWA99164 United States

This paper presents a method for the optimized reconfiguration of radial distribution systems that explicitly considers the protection systems constraints. A fully automated method based on graph analysis is proposed to automatically identify the primary-backup relation between each pair of protection devices in different network topologies. Accordingly, protection systems constraints are derived automatically and incorporated into the optimization problem. The linearized and convexified nonlinear power flow equations, along with protection system coordination constraints, are solved using the second-order cone programming (SOCP) that assures the feasibility of the results while accelerating the convergence rate. The effectiveness of the proposed methodology is demonstrated through the simulation of the 33-node IEEE test system. ©1986-2012 IEEE.

关键词： Second-order cone programming

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An End-to-End Two-Branch Network Towards Robust Video Fingerprinting

IEEE Transactions on Artificial Intelligence

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IEEE Transactions on Artificial Intelligence 2024年第5期5卷 2371-2384页

作者： Xu, Yingying Zhou, Yuanding Li, Xinran Zhao, Gejian Qin, Chuan University of Shanghai for Science and Technology School of Optical-Electrical and Computer Engineering Shanghai200093 China

With the increasing number of edited videos, many robust video fingerprinting schemes have been proposed to solve the problem of video content authentication. However, most of them either deal with the temporal and spatial features symmetrically or insufficiently consider the temporal information. In this work, an end-to-end two-branch network toward robust video fingerprinting (RVFNet) is proposed, where the two branches focus on the temporal and spatial information, respectively. The temporal branch aims to comprehensively capture complex motion patterns by combining subtle motion changes with the overall motion trend. The spatial branch exploits the pixel-level information obtained by multiple receptive fields while preserving significant structural features. Deep metric learning is employed in the training process, and we adopt hard triplet loss to constrain the generation of fingerprints. Furthermore, we construct a large-scale and complex dataset for the robust video fingerprinting task based on multiple video content-preserving manipulations in actual scenarios. The size of our dataset exceeds most datasets adopted in the current robust video fingerprinting schemes. Based on the proposed dataset, experimental results demonstrate that our scheme achieves outstanding performance improvements compared with the state of the art. © 2020 IEEE.

关键词： Convolution

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