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An Encoding-Decoding Framework Based on CNN for circ RNA-RBP Binding Sites Prediction

Chinese Journal of Electronics 2024年第1期33卷 256-263页

作者： Yajing GUO Xiujuan LEI Yi PAN School of Computer Science Shaanxi Normal University Faculty of Computer Science and Control Engineering Shenzhen Institute of Advanced TechnologyChinese Academy of Sciences Department of Computer Science Georgia State University

Predicting RNA binding protein(RBP) binding sites on circular RNAs(circ RNAs) is a fundamental step to understand their interaction mechanism. Numerous computational methods are developed to solve this problem, but they cannot fully learn the features. Therefore, we propose circ-CNNED, a convolutional neural network(CNN)-based encoding and decoding framework. We first adopt two encoding methods to obtain two original matrices. We preprocess them using CNN before fusion. To capture the feature dependencies, we utilize temporal convolutional network(TCN) and CNN to construct encoding and decoding blocks, respectively. Then we introduce global expectation pooling to learn latent information and enhance the robustness of circ-CNNED. We perform circ-CNNED across 37 datasets to evaluate its effect. The comparison and ablation experiments demonstrate that our method is superior. In addition, motif enrichment analysis on four datasets helps us to explore the reason for performance improvement of circ-CNNED.

关键词： Circular RNAs (circRNAs) RNA binding proteins Convolutional neural network Temporal convolutional network Encoder-decoder network

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Privacy-preserving explainable AI: a survey

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science China(Information sciences) 2025年第1期68卷 23-56页

作者： Thanh Tam NGUYEN Thanh Trung HUYNH Zhao REN Thanh Toan NGUYEN Phi Le NGUYEN Hongzhi YIN Quoc Viet Hung NGUYEN School of Information and Communication Technology Griffith University School of Computer and Communication Sciences Ecole Polytechnique Federale de Lausanne Faculty of Mathematics and Computer Science University of Bremen Faculty of Information Technology HUTECH University Department of Computer Science Hanoi University of Science and Technology School of Electrical Engineering and Computer Science The University of Queensland

As the adoption of explainable AI(XAI) continues to expand, the urgency to address its privacy implications intensifies. Despite a growing corpus of research in AI privacy and explainability, there is little attention on privacy-preserving model explanations. This article presents the first thorough survey about privacy attacks on model explanations and their countermeasures. Our contribution to this field comprises a thorough analysis of research papers with a connected taxonomy that facilitates the categorization of privacy attacks and countermeasures based on the targeted explanations. This work also includes an initial investigation into the causes of privacy leaks. Finally, we discuss unresolved issues and prospective research directions uncovered in our analysis. This survey aims to be a valuable resource for the research community and offers clear insights for those new to this domain. To support ongoing research, we have established an online resource repository, which will be continuously updated with new and relevant findings.

关键词： privacy-preserving explainable AI privacy attacks privacy defences PrivEx PPXAI

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Improving agility in projects using machine learning algorithm

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Multimedia Tools and Applications 2024年第38期83卷 85987-86005页

作者： Varun, Janani Karthika, R.A. Department of Computer Science and Engineering Vels Institute of Science Technology and Advanced Studies Chennai India Department of Computer Science and Engineering Saveetha School of Engineering SIMATS Chennai India

All the software products developed will need testing to ensure the quality and accuracy of the product. It makes the life of testers much easier when they can optimize on the effort spent and predict defects for the upcoming modules in the Agile era. The functionality being discussed in this paper is to predict the defects using Random Forest Algorithm. Predictive analytics draws on information from the past to create forecasts about the outcomes of future events. Product team always have the difficulty in delivering the product as per schedule. As we are in the agile era, the requirement keeps changing and team is unsure on upcoming releases. Prediction helps the team to focus on the complex and error prone modules in upcoming releases. The Predictive analytics model designed, can predict defects with an accuracy rate of 88% with the help of historical data. By predicting, testers can focus on the module where there are a greater number of defects predicted by the model and left shift the delivery. © The Author(s), under exclusive licence to Springer science+Business Media, LLC, part of Springer Nature 2024.

关键词： Predictive analytics

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Poor and rich squirrel algorithm-based Deep Maxout network for credit card fraud detection

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International Journal of Wireless and Mobile Computing 2025年第2期28卷 123-134页

作者： Paul, Annu Paul, Varghese Department of Computer Science Alphonsa College Kottayam Kerala Pala India Department of Computer Science and Engineering Rajagiri School of Engineering and Technology Kerala Kochi India

This paper proposes a Poor and Rich Squirrel Algorithm (PRSA)-based Deep Maxout network to find fraud data transactions in the credit card system. Initially, input transaction data is passed to the data transformation phase, transforming data using Yeo-Johnson (YJ) transformation. Then, the feature selection procedure is done by the Fisher score for creating the unique and significant features. Next, based on the selected textures, the data augmentation mechanism is done using the oversampling model. At last, the fraud detection is carried out by the Deep Maxout network, which is trained by the proposed PRSA optimisation algorithm, derived by integrating Poor and Rich Optimisation (PRO) and Squirrel Search Algorithm (SSA). The integration of parametric features of the PRSA algorithm effectively trained the classifier to update weights to generate the best solution by considering fitness measures. The proposed method achieved the best accuracy, sensitivity, and specificity measures of 0.96, 0.95 and 0.94, respectively. Copyright © 2025 Inderscience Enterprises Ltd.

关键词： credit card data augmentation data transformation deep learning fraud detection

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Precise control of page cache for containers

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Frontiers of computer science 2024年第2期18卷 17-30页

作者： Kun WANG Song WU Shengbang LI Zhuo HUANG Hao FAN Chen YU Hai JIN National Engineering Research Center for Big Data Technology and System Services Computing Technology and System LabCluster and Grid Computing Lab School of Computer Science and TechnologyHuazhong University of Science and TechnologyWuhan 430074China

Container-based virtualization isbecoming increasingly popular in cloud computing due to its efficiency and *** isolation is a fundamental property of *** works have indicated weak resource isolation could cause significant performance degradation for containerized applications and enhanced resource ***,current studies have almost not discussed the isolation problems of page cache which is a key resource for *** leverage memory cgroup to control page cache ***,existing policy introduces two major problems in a container-based ***,containers can utilize more memory than limited by their cgroup,effectively breaking memory ***,the Os kernel has to evict page cache to make space for newly-arrived memory requests,slowing down containerized *** paper performs an empirical study of these problems and demonstrates the performance impacts on containerized *** we propose pCache(precise control of page cache)to address the problems by dividing page cache into private and shared and controlling both kinds of page cache separately and *** do so,pCache leverages two new technologies:fair account(f-account)and evict on demand(EoD).F-account splits the shared page cache charging based on per-container share to prevent containers from using memory for free,enhancing memory *** EoD reduces unnecessary page cache evictions to avoid the performance *** evaluation results demonstrate that our system can effectively enhance memory isolation for containers and achieve substantial performance improvement over the original page cache management policy.

关键词： page cache memory cgroup container isolation cloud computing

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DNACDS:Cloud IoE big data security and accessing scheme based on DNA cryptography

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Frontiers of computer science 2024年第1期18卷 157-170页

作者： Ashish SINGH Abhinav KUMAR Suyel NAMASUDRA School of Computer Engineering KIIT Deemed to be UniversityBhubaneshwar 751024India Department of Computer Science and Engineering Indian Institute of Information Technology SuratSurat 394190India Department of Computer Science and Engineering National Institute of Technology AgartalaAgartala 799046India

The Internet of Everything(IoE)based cloud computing is one of the most prominent areas in the digital big data *** approach allows efficient infrastructure to store and access big real-time data and smart IoE services from the *** IoE-based cloud computing services are located at remote locations without the control of the data *** data owners mostly depend on the untrusted Cloud Service Provider(CSP)and do not know the implemented security *** lack of knowledge about security capabilities and control over data raises several security *** Acid(DNA)computing is a biological concept that can improve the security of IoE big *** IoE big data security scheme consists of the Station-to-Station Key Agreement Protocol(StS KAP)and Feistel cipher *** paper proposed a DNA-based cryptographic scheme and access control model(DNACDS)to solve IoE big data security and access *** experimental results illustrated that DNACDS performs better than other DNA-based security *** theoretical security analysis of the DNACDS shows better resistance capabilities.

关键词： IoE based cloud computing DNA cryptography IoE big data security StS KAP feistel cipher IoE big data access

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MMInstruct: a high-quality multi-modal instruction tuning dataset with extensive diversity

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science China(Information sciences) 2024年第12期67卷 36-51页

作者： Yangzhou LIU Yue CAO Zhangwei GAO Weiyun WANG Zhe CHEN Wenhai WANG Hao TIAN Lewei LU Xizhou ZHU Tong LU Yu QIAO Jifeng DAI School of Computer Science Nanjing University School of Electronic Information and Electrical Engineering Shanghai Jiao Tong University Shanghai AI Laboratory School of Computer Science Fudan University Department of Information Engineering The Chinese University of Hong Kong SenseTime Research Department of Electronic Engineering Tsinghua University

Despite the effectiveness of vision-language supervised fine-tuning in enhancing the performance of vision large language models(VLLMs), existing visual instruction tuning datasets include the following limitations.(1) Instruction annotation quality: despite existing VLLMs exhibiting strong performance,instructions generated by those advanced VLLMs may still suffer from inaccuracies, such as hallucinations.(2) Instructions and image diversity: the limited range of instruction types and the lack of diversity in image data may impact the model's ability to generate diversified and closer to real-world scenarios outputs. To address these challenges, we construct a high-quality, diverse visual instruction tuning dataset MMInstruct,which consists of 973k instructions from 24 domains. There are four instruction types: judgment, multiplechoice, long visual question answering, and short visual question answering. To construct MMInstruct, we propose an instruction generation data engine that leverages GPT-4V, GPT-3.5, and manual correction. Our instruction generation engine enables semi-automatic, low-cost, and multi-domain instruction generation at 1/6 the cost of manual construction. Through extensive experiment validation and ablation experiments,we demonstrate that MMInstruct could significantly improve the performance of VLLMs, e.g., the model fine-tuning on MMInstruct achieves new state-of-the-art performance on 10 out of 12 benchmarks. The code and data shall be available at https://***/yuecao0119/MMInstruct.

关键词： instruction tuning multi-modal multi-domain dataset vision large language model

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On learning the right attention point for feature enhancement

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science China(Information sciences) 2023年第1期66卷 131-143页

作者： Liqiang LIN Pengdi HUANG Chi-Wing FU Kai XU Hao ZHANG Hui HUANG College of Computer Science and Software Engineering Shenzhen University Department of Computer Science and Engineering The Chinese University of Hong Kong School of Computer Science National University of Defense Technology School of Computing Science Simon Fraser University

We present a novel attention-based mechanism to learn enhanced point features for point cloud processing tasks, e.g., classification and segmentation. Unlike prior studies, which were trained to optimize the weights of a pre-selected set of attention points, our approach learns to locate the best attention points to maximize the performance of a specific task, e.g., point cloud classification. Importantly, we advocate the use of single attention point to facilitate semantic understanding in point feature learning. Specifically,we formulate a new and simple convolution, which combines convolutional features from an input point and its corresponding learned attention point(LAP). Our attention mechanism can be easily incorporated into state-of-the-art point cloud classification and segmentation networks. Extensive experiments on common benchmarks, such as Model Net40, Shape Net Part, and S3DIS, all demonstrate that our LAP-enabled networks consistently outperform the respective original networks, as well as other competitive alternatives, which employ multiple attention points, either pre-selected or learned under our LAP framework.

关键词： point convolution feature enhancement attention point deep neural network

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Privacy-preserving recommendation with coarse-grained spatiotemporal contexts

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science China(Information sciences) 2025年第4期68卷 66-81页

作者： Lei CHEN Chen GAO Jiahuan LEI Xiaoyi DU Xinlei SHI Hengliang LUO Depeng JIN Yong LI Meng WANG Department of Electronic Engineering BNRist Tsinghua University Meituan Inc. School of Computer Science and Information Engineering Hefei University of Technology

The behavior of users on online life service platforms like Meituan and Yelp often occurs within specific finegrained spatiotemporal contexts(i.e., when and where). Recommender systems, designed to serve millions of users, typically operate in a fully server-based manner, requiring on-device users to upload their behavioral data, including fine-grained spatiotemporal contexts, to the server, which has sparked public concern regarding privacy. Consequently, user devices only upload coarse-grained spatiotemporal contexts for user privacy protection. However, previous research mostly focuses on modeling fine-grained spatiotemporal contexts using knowledge graph convolutional models, which are not applicable to coarse-grained spatiotemporal contexts in privacy-constrained recommender systems. In this paper, we investigate privacy-preserving recommendation by leveraging coarse-grained spatiotemporal contexts. We propose the coarse-grained spatiotemporal knowledge graph for privacy-preserving recommendation(CSKG), which explicitly models spatiotemporal co-occurrences using common-sense knowledge from coarse-grained contexts. Specifically, we begin by constructing a spatiotemporal knowledge graph tailored to coarse-grained spatiotemporal contexts. Then we employ a learnable metagraph network that integrates common-sense information to filter and extract co-occurrences. CSKG evaluates the impact of coarsegrained spatiotemporal contexts on user behavior through the use of a knowledge graph convolutional network. Finally, we introduce joint learning to effectively learn representations. By conducting experiments on two real large-scale datasets,we achieve an average improvement of about 11.0% on two ranking metrics. The results clearly demonstrate that CSKG outperforms state-of-the-art baselines.

关键词： privacy-preserveing coarse-grained spatiotemporal contexts recommender systems

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A Comprehensive Survey on Advanced Persistent Threat (APT) Detection Techniques

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computers, Materials & Continua 2024年第8期80卷 2675-2719页

作者： Singamaneni Krishnapriya Sukhvinder Singh Department of Computer Science School of Engineering and TechnologyPondicherry UniversityKalapet605014India

The increase in number of people using the Internet leads to increased cyberattack *** Persistent Threats,or APTs,are among the most dangerous targeted *** attacks utilize various advanced tools and techniques for attacking targets with specific *** countries with advanced technologies,like the US,Russia,the UK,and India,are susceptible to this targeted *** is a sophisticated attack that involves multiple stages and specific ***,TTP(Tools,Techniques,and Procedures)involved in the APT attack are commonly new and developed by an attacker to evade the security ***,APTs are generally implemented in multiple *** one of the stages is detected,we may apply a defense mechanism for subsequent stages,leading to the entire APT attack *** detection at the early stage of APT and the prediction of the next step in the APT kill chain are ongoing *** survey paper will provide knowledge about APT attacks and their essential *** follows the case study of known APT attacks,which will give clear information about the APT attack process—in later sections,highlighting the various detection methods defined by different researchers along with the limitations of the *** used in this article comes from the various annual reports published by security experts and blogs and information released by the enterprise networks targeted by the attack.

关键词： Advanced persistent threats APT cyber security intrusion detection cyber attacks

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