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arXiv 2024年

作者： Lv, Liuzhenghao Li, Hao Wang, Yu Yan, Zhiyuan Chen, Zijun Lin, Zongying Yuan, Li Tian, Yonghong School of Electronic and Computer Engineering Peking University Shenzhen Graduate School Shenzhen518055 China Peng Cheng Laboratory Shenzhen518000 China Preferred Program Peking University Shenzhen Graduate School Shenzhen518055 China School of Computer Science Peking University Beijing10091 China

Chemical language models (CLMs) are prominent for their effectiveness in exploring chemical space and enabling molecular design and engineering. However, while exploring chemical-linguistic space, CLMs suffer from the semantic gap between natural language and molecular representations. This challenge is primarily due to the inherent modeling differences between molecules and texts: molecules operate unified modeling to learn chemical space, while natural language sequentially models their semantic space. Additionally, the limited availability of high-quality text-to-molecule datasets further exacerbates this challenge. To address the problem, we first verified the information bias in molecular representations from different perspectives. We then developed the Heterogeneous Molecular Encoding (HME) framework, a unified molecular encoder compressing the molecular features from fragment sequence, topology, and conformation with Q-learning. To better model chemical-linguistic space, we further constructed the MCMoD dataset, which contains over one million molecules with various conditions, including properties, fragments, and descriptions. Experimentally, HME promotes CLMs to achieve chemical-linguistic sharing space exploration from two aspects: (1) chemical space exploration with linguistic guidance, where HME achieves significant improvements (+8.9% FCD) for molecular design in multiple constraints, even in zero-shot learning scenarios;(2) linguistic space exploration with molecular guidance, where HME generates textual descriptions with high qualities (+11.6% BLEU) for molecules. These results highlight the precision of HME in handling multi-objective and cross-domain tasks, as well as its remarkable generalization capability on unseen task combinations. HME offers a new perspective on navigating the chemical-linguistic sharing space, advancing the potential of CLMs in both fundamental research and practical applications in chemistry. Copyright © 2024, The Authors.

关键词： Semantics

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Microengineered platforms for characterizing the contractile function of in vitro cardiac models

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Microsystems & Nanoengineering 2022年第1期8卷 29-50页

作者： Wenkun Dou Manpreet Malhi Qili Zhao Li Wang Zongjie Huang Junhui Law Na Liu Craig A.Simmons Jason T.Maynes Yu Sun Department of Mechanical and Industrial Engineering University of TorontoTorontoON M5S 3G8Canada Program in Molecular Medicine The Hospital for Sick ChildrenTorontoON M5G 1X8Canada Department of Biochemistry University of TorontoTorontoON M5S 1A8Canada Institute of Robotics and Automatic Information System and the Tianjin Key Laboratory of Intelligent Robotics Nankai UniversityTianjin 300350China School of Mechanical&Automotive Engineering Qilu University of Technology(Shandong Academy of Sciences)Jinan 250353China School of Mechatronics Engineering and Automation Shanghai UniversityShanghai 200444China Institute of Biomedical Engineering University of TorontoTorontoON M5S 3G9Canada Translational Biology&Engineering Program Ted Rogers Centre for Heart ResearchTorontoON M5G 1M1Canada Department of Anesthesiology and Pain Medicine University of TorontoTorontoON M5S 1A8Canada Department of Anesthesia and Pain Medicine The Hospital for Sick ChildrenTorontoON M5G 1X8Canada Department of Electrical and Computer Engineering University of TorontoTorontoON M5S 3G4Canada Department of Computer Science University of TorontoTorontoON M5T 3A1Canada

Emerging heart-on-a-chip platforms are promising approaches to establish cardiac cell/tissue models in vitro for research on cardiac physiology,disease modeling and drug cardiotoxicity as well as for therapeutic *** still exist in obtaining the complete capability of in situ sensing to fully evaluate the complex functional properties of cardiac cell/tissue *** to contractile strength(contractility)and beating regularity(rhythm)are particularly important to generate accurate,predictive *** new platforms and technologies to assess the contractile functions of in vitro cardiac models is essential to provide information on cell/tissue physiologies,drug-induced inotropic responses,and the mechanisms of cardiac *** this review,we discuss recent advances in biosensing platforms for the measurement of contractile functions of in vitro cardiac models,including single cardiomyocytes,2D monolayers of cardiomyocytes,and 3D cardiac *** characteristics and performance of current platforms are reviewed in terms of sensing principles,measured parameters,performance,cell sources,cell/tissue model configurations,advantages,and *** addition,we highlight applications of these platforms and relevant discoveries in fundamental investigations,drug testing,and disease ***,challenges and future outlooks of heart-on-a-chip platforms for in vitro measurement of cardiac functional properties are discussed.

关键词： cardiac contractile regularity

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Information Elicitation from Decentralized Crowd Without Verification

arXiv

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arXiv 2023年

作者： Chen, Kexin Huang, Chao Huang, Jianwei the School of Science and Engineering The Chinese University of Hong Kong Shenzhen Shenzhen518172 China Department of Computer Science the University of California Davis United States School of Science and Engineering Shenzhen Institute of Artificial Intelligence and Robotics for Society The Chinese University of Hong Kong Shenzhen Shenzhen518172 China

Information Elicitation Without Verification (IEWV) refers to the problem of eliciting high-accuracy solutions from crowd members when the ground truth is unverifiable. A high-accuracy team solution (aggregated from members’ solutions) requires members’ effort exertion, which should be incentivized properly. Previous research on IEWV mainly focused on scenarios where a central entity (e.g., the crowdsourcing platform) provides incentives to motivate crowd members. Still, the proposed designs do not apply to practical situations where no central entity exists. This paper studies the overlooked decentralized IEWV scenario, where crowd members act as both incentive contributors and task solvers. We model the interactions among members with heterogeneous team solution accuracy valuations as a two-stage game, where each member decides her incentive contribution strategy in Stage 1 and her effort exertion strategy in Stage 2. We analyze members’ equilibrium behaviors under three incentive allocation mechanisms: Equal Allocation (EA), Output Agreement (OA), and Shapley Value (SV). We show that at an equilibrium under any allocation mechanism, a low-valuation member exerts no more effort than a high-valuation member. Counter-intuitively, a low-valuation member provides incentives to the collaboration while a high-valuation member does not at an equilibrium under SV. This is because a high-valuation member who values the aggregated team solution more needs fewer incentives to exert effort. In addition, when members’ valuations are sufficiently heterogeneous, SV leads to team solution accuracy and social welfare no smaller than EA and OA. Copyright © 2023, The Authors. All rights reserved.

关键词： Crowdsourcing

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Salient Sparse Visual Odometry with Pose-only Supervision

arXiv

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arXiv 2024年

作者： Chen, Siyu Liu, Kangcheng Wang, Chen Yuan, Shenghai Yang, Jianfei Xie, Lihua The School of Electrical and Electronic Engineering Nanyang Technological University 50 Nanyang Avenue Singapore639798 Singapore The Spatial AI & Robotics Lab The Department of Computer Science & Engineering State University of New York at Buffalo BuffaloNY14260 United States

Visual Odometry (VO) is vital for the navigation of autonomous systems, providing accurate position and orientation estimates at reasonable costs. While traditional VO methods excel in some conditions, they struggle with challenges like variable lighting and motion blur. Deep learning-based VO, though more adaptable, can face generalization problems in new environments. Addressing these drawbacks, this paper presents a novel hybrid visual odometry (VO) framework that leverages pose-only supervision, offering a balanced solution between robustness and the need for extensive labeling. We propose two cost-effective and innovative designs: a self-supervised homographic pre-training for enhancing optical flow learning from pose-only labels and a random patch-based salient point detection strategy for more accurate optical flow patch extraction. These designs eliminate the need for dense optical flow labels for training and significantly improve the generalization capability of the system in diverse and challenging environments. Our pose-only supervised method achieves competitive performance on standard datasets and greater robustness and generalization ability in extreme and unseen scenarios, even compared to dense optical flow-supervised state-of-the-art methods. Copyright © 2024, The Authors. All rights reserved.

关键词： Optical flows

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3D Geometric Shape Assembly via Efficient Point Cloud Matching

arXiv

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arXiv 2024年

作者： Lee, Nahyuk Min, Juhong Lee, Junha Kim, Seungwook Lee, Kanghee Park, Jaesik Cho, Minsu Department of Computer Science and Engineering POSTECH Pohang Korea Republic of Graduate School of Artificial Intelligence POSTECH Pohang Korea Republic of Department of Computer Science and Engineering Seoul National University Seoul Korea Republic of Interdisciplinary Program in Artificial Intelligence Seoul National University Seoul Korea Republic of

Learning to assemble geometric shapes into a larger target structure is a pivotal task in various practical applications. In this work, we tackle this problem by establishing local correspondences between point clouds of part shapes in both coarse- and fine-levels. To this end, we introduce Proxy Match Transform (PMT), an approximate high-order feature transform layer that enables reliable matching between mating surfaces of parts while incurring low costs in memory and computation. Building upon PMT, we introduce a new framework, dubbed Proxy Match TransformeR (PMTR), for the geometric assembly task. We evaluate the proposed PMTR on the large-scale 3D geometric shape assembly benchmark dataset of Breaking Bad and demonstrate its superior performance and efficiency compared to state-of-the-art methods. Project page: https://***/pmtr. Copyright © 2024, The Authors. All rights reserved.

关键词： Large datasets

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Attention in Attention for PET-CT Modality Consensus Lung Tumor Segmentation

Attention in Attention for PET-CT Modality Consensus Lung Tu...

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IEEE International Conference on Multimedia and Expo (ICME)

作者： Yuzhou Zhao Xinyu Zhou Haijing Guo Qianyu Guo Yan Zuo Shaoli Song Shuyong Gao Wenqiang Zhang Shanghai Key Lab of Intelligent Information Processing School of Computer Science Fudan University Department of Nuclear Medicine Fudan University Shanghai Cancer Center China Shanghai Engineering Research Center of AI Robotics Academy for Engineering and Technology Fudan University

ISBN: (数字)9798350390155

ISBN: (纸本)9798350390162

Combination of multi-modal PET-CT imaging for lung tumor segmentation is significant for clinical treatment. Existing methods have not fully considered the impact of noise in PET-CT on the multi-modal interaction. To address this, we propose a novel Attention in Attention Network (AiANet). AiANet can mutually learn multi-modal characteristics for segmentation through its cross-learning modules. Within the cross-learning module, we introduce two nested-attention blocks, namely Attention in Self-Attention (AiSA) and Attention in Cross-Attention (AiCA), for multi-scale feature enhancement and multi-modal feature interaction. Importantly, since traditional attention weights calculated solely or unilaterally based on PET or CT can be vulnerable to the inevitable noisy information, we embed a novel Attention in Attention (AiA) module into AiSA and AiCA. The AiA module can seek cross-modal consensus for attention weights to alleviate their noise. Experimental results on clinical PET-CT data of lung cancer demonstrate the superiority of our method.

关键词： Image segmentation Computed tomography Aggregates Noise Lung cancer Imaging Noise measurement Tumors

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Towards cross-modal causal structure and representation learning 2

Towards cross-modal causal structure and representation lear...

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2nd Machine Learning for Health Symposium, ML4H 2022

作者： Mao, Haiyi Liu, Hongfu Xiaotian Dou, Jason Benos, Panayiotis V. Joint CMU-Pitt PhD Program in Computational Biology University of Pittsburgh United States Michtom School of Computer Science Brandeis University United States Department of Electrical and Computer Engineering University of Pittsburgh United States Department of Epidemiology University of Florida United States

Does the SARS-CoV-2 virus cause patients' chest X-Rays ground-glass opacities? Does an IDH-mutation cause differences in patients' MRI images? Conventional causal discovery algorithms, although well developed to uncover the cause-effect relationships on structured data, cannot elucidate causal relations between unstructured images and structured scalar variables due to the complexity of the former. In this paper, we consider causal discovery between images and structured (scalar) variables. Specifically, we derive low dimensional image representations to analyze with structured variables. We propose a two-module amortized variational algorithm named Cross-Modal Variational Causal representation and structure Learning (CMCL). CMCL jointly learns identifiable representations given a set of independent structured variables and causal relations via formulating latent representations and structured variables into a direct acyclic graph. Moreover, we further enforce counterfactual invariance/variance onto representations. We demonstrate that CMCL outperforms other related methods on synthetic datasets and validate causal relations on semi-synthetic datasets by visualization. © 2022 P.N. Argaw, E. Healey & I.S. Kohane.

关键词： Coronavirus

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Design and Evaluation of a Needle Manipulation System with EM Tracking for CT-Guided Spinal Injections

Design and Evaluation of a Needle Manipulation System with E...

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International Symposium on Medical robotics (ISMR)

作者： Chang Chang Junling Mei Yanzhou Wang Lidia Al-Zogbi Simon Leonard Amit Jain Iulian Iordachita Department of Mechanical Engineering Laboratory of Computational Sensing and Robotics Johns Hopkins University Baltimore MD USA Laboratory of Computational Sensing and Robotics Johns Hopkins University Baltimore MD USA Department of Computer Science Laboratory of Computational Sensing and Robotics Johns Hopkins University Baltimore MD USA Department of Orthopaedic Surgery Johns Hopkins University School of Medicine Baltimore MD USA

ISBN: (数字)9798331599003

ISBN: (纸本)9798331599010

This paper presents a flexible needle guidance system and its workflow that enables registration of computed tomography (CT) and electromagnetic (EM) tracking systems with a finite element (FE) simulator for needle-based percutaneous spinal injections. CT is used only pre- and postoperatively for surgical planning and confirmation, while EM tracking is combined intraoperatively with an FE-based needle controller to track the planned needle trajectory and avoid obstacles. Evaluation of the proposed system using a multi-layer soft tissue phantom shows an average targeting accuracy of 0.4 mm.

关键词： Target tracking Medical robotics Computed tomography Biological tissues Phantoms Needles Trajectory Planning Finite element analysis Electromagnetics

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HairDiffusion: Vivid Multi-Colored Hair Editing via Latent Diffusion

arXiv

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arXiv 2024年

作者： Zeng, Yu Zhang, Yang Liu, Jiachen Shen, Linlin Deng, Kaijun He, Weizhao Wang, Jinbao Computer Vision Institute School of Computer Science & Software Engineering Shenzhen University China Shenzhen Institute of Artificial Intelligence and Robotics for Society China National Engineering Laboratory for Big Data System Computing Technology Shenzhen University China Guangdong Provincial Key Laboratory of Intelligent Information Processing China

Hair editing is a critical image synthesis task that aims to edit hair color and hairstyle using text descriptions or reference images, while preserving irrelevant attributes (e.g., identity, background, cloth). Many existing methods are based on StyleGAN to address this task. However, due to the limited spatial distribution of StyleGAN, it struggles with multiple hair color editing and facial preservation. Considering the advancements in diffusion models, we utilize Latent Diffusion Models (LDMs) for hairstyle editing. Our approach introduces Multi-stage Hairstyle Blend (MHB), effectively separating control of hair color and hairstyle in diffusion latent space. Additionally, we train a warping module to align the hair color with the target region. To further enhance multi-color hairstyle editing, we fine-tuned a CLIP model using a multi-color hairstyle dataset. Our method not only tackles the complexity of multi-color hairstyles but also addresses the challenge of preserving original colors during diffusion editing. Extensive experiments showcase the superiority of our method in editing multi-color hairstyles while preserving facial attributes given textual descriptions and reference images. © 2024, CC BY.

关键词： Color image processing

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Self context-aware emotion perception on human-robot interaction

arXiv

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arXiv 2024年

作者： Lin, Zihan Cruz, Francisco Sandoval, Eduardo Benitez School of Computer Science and Engineering University of New South Wales Sydney Australia Escuela de Ingeniería Universidad Central de Chile Santiago Chile School of Art and Design Creative Robotics Lab University of New South Wales Sydney Australia

Emotion recognition plays a crucial role in various domains of human-robot interaction. In long-term interactions with humans, robots need to respond continuously and accurately, however, the mainstream emotion recognition methods mostly focus on short-term emotion recognition, disregarding the context in which emotions are perceived. Humans consider that contextual information and different contexts can lead to completely different emotional expressions. In this paper, we introduce self context-aware model (SCAM) that employs a two-dimensional emotion coordinate system for anchoring and re-labeling distinct emotions. Simultaneously, it incorporates its distinctive information retention structure and contextual loss. This approach has yielded significant improvements across audio, video, and multimodal. In the auditory modality, there has been a notable enhancement in accuracy, rising from 63.10% to 72.46%. Similarly, the visual modality has demonstrated improved accuracy, increasing from 77.03% to 80.82%. In the multimodal, accuracy has experienced an elevation from 77.48% to 78.93%. In the future, we will validate the reliability and usability of SCAM on robots through psychology experiments. © 2024, CC BY.

关键词： Emotion Recognition

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