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arXiv 2022年

作者： Xu, Yuankun Huang, Dong Wang, Chang-Dong Lai, Jian-Huang College of Mathematics and Informatics South China Agricultural University China Key Laboratory of Smart Agricultural Technology in Tropical South China Ministry of Agriculture and Rural Affairs China School of Computer Science and Engineering Sun Yat-sen University China Guangdong Provincial Key Laboratory of Intellectual Property and Big Data China

Deep clustering has shown its promising capability in joint representation learning and clustering via deep neural networks. Despite the significant progress, the existing deep clustering works mostly utilize some distribution-based clustering loss, lacking the ability to unify representation learning and multi-scale structure learning. To address this, this paper presents a new deep clustering approach termed Image clustering with contrastive learning and multi-scale Graph Convolutional Networks (IcicleGCN), which bridges the gap between convolutional neural network (CNN) and graph convolutional network (GCN) as well as the gap between contrastive learning and multi-scale structure learning for the deep clustering task. Our framework consists of four main modules, namely, the CNN-based backbone, the Instance Similarity Module (ISM), the Joint Cluster Structure Learning and Instance reconstruction Module (JC-SLIM), and the Multi-scale GCN module (M-GCN). Specifically, the backbone network with two weight-sharing views is utilized to learn the representations for the two augmented samples (from each image). The learned representations are then fed to ISM and JC-SLIM for joint instance-level and cluster-level contrastive learning, respectively, during which an auto-encoder in JC-SLIM is also pretrained to serve as a bridge to the M-GCN module. Further, to enforce multi-scale neighborhood structure learning, two streams of GCNs and the auto-encoder are simultaneously trained via (i) the layer-wise interaction with representation fusion and (ii) the joint self-adaptive learning. Experiments on multiple image datasets demonstrate the superior clustering performance of IcicleGCN over the state-of-the-art. The code is available at https://***/xuyuankun631/IcicleGCN. © 2022, CC BY.

关键词： Convolutional neural networks

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An assessment framework for distributed ledger technology in financial application 2

An assessment framework for distributed ledger technology in...

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2nd ACM International Symposium on Blockchain and Secure Critical Infrastructure, BSCI 2020, Co-located with AsiaCCS 2020

作者： Qing, Sude Liu, Xiulei Zheng, Hongwei School of Mathematical Sciences Beihang University Key Laboratory of Mathematics Informatics and Behavioral Semantics Beijing China Laboratory of Data Science and Information Studies Beijing Information Science and Technology University Beijing China Institute of Artificial Intelligence and Block Chain Research Guangzhou University Guangzhou China

ISBN: (纸本)9781450376105

Distributed Ledger Technology (DLT) currently stands in the limelight. In many people's eyes, DLT has great potential to accelerate the digitalization process and substantially change the roles and services of central banks. On the other hands, as many new applications for DLT spring up, there isn't an assessment framework to evaluate DLT applied in the financial industry, leaving those systems to be easily under attack. This paper presents an initial DLT assessment framework for financial application. Through a suite of benchmarks, we show the evaluation results and explore the factors which affect the performance and security of DLT application. © 2020 ACM.

关键词： Distributed ledger

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OrigamiPlot: An R Package and Shiny Web App Enhanced Visualizations for Multivariate data

arXiv

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arXiv 2024年

作者： Lu, Yiwen Tong, Jiayi Lei, Yuqing Sutton, Alex J. Chu, Haitao Levine, Lisa D. Lumley, Thomas Asch, David A. Duan, Rui Schmid, Christopher H. Chen, Yong Department of Biostatistics Epidemiology and Informatics Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Department of Biostatistics Epidemiology and Informatics University of Pennsylvania Perelman School of Medicine PhiladelphiaPA United States The Graduate Group in Applied Mathematics and Computational Science School of Arts and Sciences University of Pennsylvania PhiladelphiaPA United States Department of Biostatistics Johns Hopkins Bloomberg School of Public Health BaltimoreMD United States Department of Population Health Sciences University of Leicester Leicester United Kingdom Division of Biostatistics and Health Data Science University of Minnesota MinneapolisMN United States Statistical Research and Innovation Global Biometrics and Data Management Pfizer Inc. New YorkNY United States Pregnancy and Perinatal Research Center Department of Obstetrics & Gynecology University of Pennsylvania Perelman School of Medicine PhiladelphiaPA United States Leonard Davis Institute of Health Economics PhiladelphiaPA United States Department of Statistics Faculty of Science University of Auckland Auckland New Zealand Division of General Internal Medicine University of Pennsylvania PhiladelphiaPA United States Department of Biostatistics Harvard T.H. Chan School of Public Health BostonMA United States Department of Biostatistics Brown University ProvidenceRI United States PhiladelphiaPA United States PhiladelphiaPA United States

We introduce OrigamiPlot, an open-source R package and Shiny web application designed to enhance the visualization of multivariate data. This package implements the origami plot, a novel visualization technique proposed by Duan et al. in 2023, which improves upon traditional radar charts by ensuring that the area of the connected region is invariant to the ordering of attributes, addressing a key limitation of radar charts. The software facilitates multivariate decision-making by supporting comparisons across multiple objects and attributes, offering customizable features such as auxiliary axes and weighted attributes for enhanced clarity. Through the R package and user-friendly Shiny interface, researchers can efficiently create and customize plots without requiring extensive programming knowledge. Demonstrated using network meta-analysis as a real-world example, OrigamiPlot proves to be a versatile tool for visualizing multivariate data across various fields. This package opens new opportunities for simplifying decision-making processes with complex data. © 2024, CC BY.

关键词： data visualization

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Targeted AMP generation through controlled diffusion with efficient embeddings

arXiv

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arXiv 2025年

作者： Soares, Diogo Hetzel, Leon Szymczak, Paulina Theis, Fabian Günnemann, Stephan Szczurek, Ewa School of Computation Information and Technology Technical University of Munich Germany Munich Data Science Institute Technical University of Munich Germany Center for Computation Health Helmholtz Munich Germany Faculty of Mathematics Informatics and Mechanics University of Warsaw Poland

Deep learning-based antimicrobial peptide (AMP) discovery faces critical challenges such as low experimental hit rates as well as the need for nuanced controllability and efficient modeling of peptide properties. To address these challenges, we introduce OmegAMP, a framework that leverages a diffusion-based generative model with efficient low-dimensional embeddings, precise controllability mechanisms, and novel classifiers with drastically reduced false positive rates for candidate filtering. OmegAMP enables the targeted generation of AMPs with specific physicochemical properties, activity profiles, and species-specific effectiveness. Moreover, it maximizes sample diversity while ensuring faithfulness to the underlying data distribution during generation. We demonstrate that OmegAMP achieves state-of-the-art performance across all stages of the AMP discovery pipeline, significantly advancing the potential of computational frameworks in combating antimicrobial resistance. © 2025, CC BY.

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Representation learning of reconstructed graphs using random walk graph convolutional network

arXiv

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arXiv 2021年

作者： Li, Xing Wei, Wei Feng, Xiangnan Zheng, Zhiming School of Mathematical Science Beihang University Beijing China Key Laboratory of Mathematics Informatics Behavioral Semantics Ministry of Education China Peng Cheng Laboratory ShenzhenGuangdong China Beijing Advanced Innovation Center for Big Data and Brain Computing Beihang University Beijing China Key Laboratory of Mathematics Informatics Behavioral Semantics Ministry of Education China

Graphs are often used to organize data because of their simple topological structure, and therefore play a key role in machine learning. And it turns out that the low-dimensional embedded representation obtained by graph representation learning are extremely useful in various typical tasks, such as node classification, content recommendation and link prediction. However, the existing methods mostly start from the microstructure (i.e., the edges) in the graph, ignoring the mesoscopic structure (high-order local structure). Here, we propose wGCN – a novel framework that utilizes random walk to obtain the node-specific mesoscopic structures of the graph, and utilizes these mesoscopic structures to reconstruct the graph And organize the characteristic information of the nodes. Our method can effectively generate node embeddings for previously unseen data, which has been proven in a series of experiments conducted on citation networks and social networks (our method has advantages over baseline methods). We believe that combining high-order local structural information can more efficiently explore the potential of the network, which will greatly improve the learning efficiency of graph neural network and promote the establishment of new learning models. © 2021, CC BY.

关键词： Graph neural networks

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Investigation of the hyperchaos and control in the fractional order financial system with profit margin

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Partial Differential Equations in Applied mathematics 2024年 9卷

作者： Johansyah, Muhamad Deni Sambas, Aceng Qureshi, Sania Zheng, Song Abed-Elhameed, Tarek M. Vaidyanathan, Sundarapandian Sulaiman, Ibrahim Mohammed Department of Mathematics Faculty of Informatics and Computing Universiti Sultan Zainal Abidin Campus Besut Terengganu 22200 Malaysia Department of Mechanical Engineering Universitas Muhammadiyah Tasikmalaya Tamansari Gobras Tasikmalaya 46196 Indonesia Department of Computer Science and Mathematics Lebanese American University Beirut 13-5053 Lebanon Department of Mathematics Near East University Mersin 99138 Turkey Department of Basic Sciences and Related Studies Mehran University of Engineering and Technology Jamshoro 72060 Pakistan School of Data Science Zhejiang University of Finance and Economics Hangzhou 310018 China Institute of Mathematics and Interdisciplinary Sciences Zhejiang University of Finance and Economics 310018 China Department of Mathematics Faculty of Science Assiut University Assiut 71516 Egypt Centre for Control Systems Vel Tech University Avadi Tamil Nadu Chennai 600062 India Institute of Strategic Industrial Decision Modelling School of Quantitative Sciences Universiti Utara Malaysia Sintok Bukit Kayu Hitam Kedah 06010 Malaysia Faculty of Education and Arts Sohar University Sohar 311 Oman

This research study proposes a novel hyperchaotic finance system with profit margin and then utilizes the Adomian Decomposition Method (ADM) to tackle the solution of the associated Caputo-derivative based fractional-order hyperchaotic finance system with profit margin. Numerical simulations and analyses, such as the evaluation of Lyapunov exponents (LE), the creation of bifurcation diagrams (BD), the complexity analysis (CA), and the 0-1 test, are used to get a full picture of the system. The results of our study demonstrate the occurrence of periodic, chaotic, and hyperchaotic dynamics in the system. Furthermore, the overall criteria for the existence and the uniqueness of the exact solutions for Caputo fractional-order models are presented. In addition, we present a control methodology for the fractional-order hyperchaotic financial system utilizing the Laplace transform and linear feedback control. Significantly, our research showcases a noteworthy correlation between the analytical results and numerical simulations, emphasizing the soundness and effectiveness of our methodology. © 2024 The Author(s)

关键词： Chaotic system Financial system Fractional order Hyperchaos

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Improved LSTM hyperparameters alongside sentiment walk-forward validation for time series prediction

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Journal of Open Innovation: Technology, Market, and Complexity 2025年第1期11卷

作者： Wahyuddin, Eko Putra Caraka, Rezzy Eko Kurniawan, Robert Caesarendra, Wahyu Gio, Prana Ugiana Pardamean, Bens Department of Statistical Computing Politeknik Statistika STIS Jakarta 13330 Indonesia Statistics Indonesia (BPS) Jl. Dr Sutomo 6-8 Jakarta Indonesia School of Economics and Business Telkom University Bandung 40257 Indonesia Research Center for Data and Information Sciences Research Organization for Electronics and Informatics National Research and Innovation Agency (BRIN) Bandung 40135 Indonesia Faculty of Integrated Technologies Universiti Brunei Darussalam Gadong BE1410 Brunei Darussalam Department of Mathematics Universitas Sumatera Utara Medan 20155 Indonesia Bioinformatics and Data Science Research Centre Bina Nusantara University DKI Jakarta 11480 Indonesia Computer Science Department BINUS Graduate Program Master of Computer Science Program Bina Nusantara University DKI Jakarta 11480 Indonesia

This study aims to address the common issue of biased estimation errors in time series modeling by analyzing the error in locating ideal hyperparameters and defining appropriate validation methods. Specifically, it focuses on predicting the stock price of Bank Rakyat Indonesia using a combination of historical stock prices, technical indicators, exchange rates, and news sentiment data, while determining the optimal variables for deep learning models. Employing a deep learning-based Long-Short Term Memory (LSTM) model, the study optimizes hyperparameters alongside walk-forward validation for time series prediction. It explores different combinations of variables and adapts the sliding window approach to the context of the data. The results highlight the importance of optimizing hyperparameters and utilizing walk-forward validation for accurate time series prediction. The model incorporating historical stock prices and sentiment scores outperforms others, achieving an RMSE of 96.61 and MAE of 86.97. Incorporating sentiment scores reduces RMSE by 39.55 % compared to models using only historical stock prices, while adding technical indicators does not yield improvement. This study contributes to the field by addressing the issue of biased estimation errors in time series modeling, offering insights into the optimization of hyperparameters and validation methods for accurate predictions. It also underscores the significance of incorporating sentiment analysis alongside historical stock prices for improved forecasting accuracy. © 2024 The Authors

关键词： LSTM Sentiment analysis Stock price prediction Time series modeling Validation methods

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Tumor Detection, Segmentation and Classification Challenge on Automated 3D Breast Ultrasound: The TDSC-ABUS Challenge

arXiv

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arXiv 2025年

作者： Luo, Gongning Xu, Mingwang Chen, Hongyu Liang, Xinjie Tao, Xing Ni, Dong Jeong, Hyunsu Kim, Chulhong Stock, Raphael Baumgartner, Michael Kirchhoff, Yannick Rokuss, Maximilian Maier-Hein, Klaus Yang, Zhikai Fan, Tianyu Boutry, Nicolas Tereshchenko, Dmitry Moine, Arthur Charmetant, Maximilien Sauer, Jan Du, Hao Bai, Xiang-Hui Raikar, Vipul Pai Montoya-Del-Angel, Ricardo Martí, Robert Luna, Miguel Lee, Dongmin Qayyum, Abdul Mazher, Moona Guo, Qihui Wang, Changyan Awasthi, Navchetan Zhao, Qiaochu Wang, Wei Wang, Kuanquan Wang, Qiucheng Dong, Suyu School of Computer Science and Technology Harbin Institute of Technology Harbin150001 China Department of Mathematics Faculty of Science National University of Singapore Singapore National-Regional Key Technology Engineering Laboratory for Medical Ultrasound School of Biomedical Engineering Shenzhen University Medical School Shenzhen University Shenzhen China Laboratory Shenzhen University Shenzhen China School of Biomedical Engineering and Informatics Nanjing Medical University Nanjing China Pohang Korea Republic of Heidelberg Division of Medical Image Computing Heidelberg Germany Faculty of Mathematics and Computer Science Heidelberg University Germany Heidelberg Germany HIDSS4Health - Helmholtz Information and Data Science School for Health Karlsruhe Heidelberg Germany Pattern Analysis and Learning Group Department of Radiation Oncology Heidelberg University Hospital Germany Department of Biomedical Engineering and Health KTH Royal Institute of Technology Stockholm Sweden France FathomX Singapore Saw Swee Hock School of Public Health National University of Singapore Singapore Philips Research University of Girona Spain Department of Robotics and Mechatronics Engineering DGIST Korea Republic of Department of Interdisciplinary Studies of Artificial Intelligence DGIST Korea Republic of National Heart and Lung Institute Faculty of Medicine Imperial College London London United Kingdom Centre for Medical Image Computing Department of Computer Science University College London London United Kingdom Lab School of Communication and Information Engineering Shanghai University Shanghai China Faculty of Science Mathematics and Computer Science Informatics Institute University of Amsterdam Amsterdam1090 GH Netherlands Department of Biomedical Engineering and Physics Amsterdam UMC Amsterdam1081 HV Netherlands Xi’an Jiaotong-Liverpool University China Department of Ultrasound Harbin Medical University Cancer Hospital No. 150 Haping Road Nangang

Breast cancer is one of the most common causes of death among women worldwide. Early detection helps in reducing the number of deaths. Automated 3D Breast Ultrasound (ABUS) is a newer approach for breast screening, which has many advantages over handheld mammography such as safety, speed, and higher detection rate of breast cancer. Tumor detection, segmentation, and classification are key components in the analysis of medical images, especially challenging in the context of 3D ABUS due to the significant variability in tumor size and shape, unclear tumor boundaries, and a low signal-to-noise ratio. The lack of publicly accessible, well-labeled ABUS datasets further hinders the advancement of systems for breast tumor analysis. Addressing this gap, we have organized the inaugural Tumor Detection, Segmentation, and Classification Challenge on Automated 3D Breast Ultrasound 2023 (TDSC-ABUS2023). This initiative aims to spearhead research in this field and create a definitive benchmark for tasks associated with 3D ABUS image analysis. In this paper, we summarize the top-performing algorithms from the challenge and provide critical analysis for ABUS image examination. We offer the TDSC-ABUS challenge as an open-access platform at https://***/ to benchmark and inspire future developments in1algorithmic research. © 2025, CC BY.

关键词： Image segmentation

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Touchstone Benchmark: Are We on the Right Way for Evaluating AI Algorithms for Medical Segmentation?

arXiv

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arXiv 2024年

作者： Bassi, Pedro R.A.S. Li, Wenxuan Tang, Yucheng Isensee, Fabian Wang, Zifu Chen, Jieneng Chou, Yu-Cheng Roy, Saikat Kirchhoff, Yannick Rokuss, Maximilian Huang, Ziyan Ye, Jin He, Junjun Wald, Tassilo Ulrich, Constantin Baumgartner, Michael Maier-Hein, Klaus H. Jaeger, Paul Ye, Yiwen Xie, Yutong Zhang, Jianpeng Chen, Ziyang Xia, Yong Xing, Zhaohu Zhu, Lei Sadegheih, Yousef Bozorgpour, Afshin Kumari, Pratibha Azad, Reza Merhof, Dorit Shi, Pengcheng Ma, Ting Du, Yuxin Bai, Fan Huang, Tiejun Zhao, Bo Wang, Haonan Li, Xiaomeng Gu, Hanxue Dong, Haoyu Yang, Jichen Mazurowski, Maciej A. Gupta, Saumya Wu, Linshan Zhuang, Jiaxin Chen, Hao Roth, Holger Xu, Daguang Blaschko, Matthew B. Decherchi, Sergio Cavalli, Andrea Yuille, Alan L. Zhou, Zongwei Department of Computer Science Johns Hopkins University United States Department of Pharmacy and Biotechnology University of Bologna Italy Center for Biomolecular Nanotechnologies Istituto Italiano di Tecnologia Italy NVIDIA United States Germany Germany ESAT-PSI KU Leuven Belgium Faculty of Mathematics and Computer Science Heidelberg University Germany HIDSS4Health - Helmholtz Information and Data Science School for Health Germany Shanghai Jiao Tong University China Shanghai Artificial Intelligence Laboratory China Pattern Analysis and Learning Group Department of Radiation Oncology Heidelberg University Hospital Germany DKFZ Germany School of Computer Science and Engineering Northwestern Polytechnical University China Australian Institute for Machine Learning The University of Adelaide Australia College of Computer Science and Technology Zhejiang University China Hong Kong University of Science and Technology Guangzhou China Hong Kong University of Science and Technology Hong Kong Faculty of Informatics and Data Science University of Regensburg Germany Faculty of Electrical Engineering and Information Technology RWTH Aachen University Germany Fraunhofer Institute for Digital Medicine MEVIS Germany Electronic & Information Engineering School Harbin Institute of Technology Shenzhen China China The Chinese University of Hong Kong Hong Kong Peking University China Department of Electrical and Computer Engineering Duke University United States Stony Brook University United States Department of Computer Science and Engineering Department of Chemical and Biological Engineering Division of Life Science Hong Kong University of Science and Technology Hong Kong Data Science and Computation Facility Fondazione Istituto Italiano di Tecnologia Italy Ecole Polytechnique Fédérale de Lausanne Switzerland

How can we test AI performance? This question seems trivial, but it isn’t. Standard benchmarks often have problems such as in-distribution and small-size test sets, oversimplified metrics, unfair comparisons, and short-term outcome pressure. As a consequence, good performance on standard benchmarks does not guarantee success in real-world scenarios. To address these problems, we present Touchstone, a large-scale collaborative segmentation benchmark of 9 types of abdominal organs. This benchmark is based on 5,195 training CT scans from 76 hospitals around the world and 5,903 testing CT scans from 11 additional hospitals. This diverse test set enhances the statistical significance of benchmark results and rigorously evaluates AI algorithms across out-of-distribution scenarios. We invited 14 inventors of 19 AI algorithms to train their algorithms, while our team, as a third party, independently evaluated these algorithms. In addition, we also evaluated pre-existing AI frameworks—which, differing from algorithms, are more flexible and can support different algorithms—including MONAI from NVIDIA, nnU-Net from DKFZ, and numerous other open-source frameworks. We are committed to expanding this benchmark to encourage more innovation of AI algorithms for the medical domain. Copyright © 2024, The Authors. All rights reserved.

关键词： Open systems

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Multiscale regression on unknown manifolds

arXiv

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arXiv 2021年

作者： Liao, Wenjing Maggioni, Mauro Vigogna, Stefano School of Mathematics Georgia Institute of Technology AtlantaGA30313 United States Department of Mathematics Department of Applied Mathematics and Statistics Mathematical Institute of Data Science Johns Hopkins University BaltimoreMD21218 United States MaLGa Center Department of Informatics Bioengineering Robotics and Systems Engineering University of Genova Genova16145 Italy

We consider the regression problem of estimating functions on RD but supported on a d-dimensional manifold M ⊂ RD with d D. Drawing ideas from multi-resolution analysis and nonlinear approximation, we construct low-dimensional coordinates on M at multiple scales, and perform multiscale regression by local polynomial fitting. We propose a data-driven wavelet thresholding scheme that automatically adapts to the unknown regularity of the function, allowing for efficient estimation of functions exhibiting nonuniform regularity at different locations and scales. We analyze the generalization error of our method by proving finite sample bounds in high probability on rich classes of priors. Our estimator attains optimal learning rates (up to logarithmic factors) as if the function was defined on a known Euclidean domain of dimension d, instead of an unknown manifold embedded in RD. The implemented algorithm has quasilinear complexity in the sample size, with constants linear in D and exponential in d. Our work therefore establishes a new framework for regression on low-dimensional sets embedded in high dimensions, with fast implementation and strong theoretical guarantees. Copyright © 2021, The Authors. All rights reserved.

关键词： Regression analysis

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