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Jointly learning structured analysis discriminative dictionary and analysis multiclass classifier

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arXiv 2019年

作者： Zhang, Zhao Jiang, Weiming Qin, Jie Zhang, Li Li, Fanzhang Zhang, Min Yan, Shuicheng School of Computer Science and Technology Provincial Key Laboratory for Computer Information Processing Technology Soochow University Suzhou215006 China Computer Vision Laboratory ETH Zürich Zürich8092 Switzerland Department of Electrical and Computer Engineering National University of Singapore Singapore Singapore

In this paper, we propose an analysis mechanism based structured Analysis Discriminative Dictionary Learning (ADDL) framework. ADDL seamlessly integrates the analysis discriminative dictionary learning, analysis representation and analysis classifier training into a unified model. The applied analysis mechanism can make sure that the learnt dictionaries, representations and linear classifiers over different classes are independent and discriminating as much as possible. The dictionary is obtained by minimizing a reconstruction error and an analytical incoherence promoting term that encourages the sub-dictionaries associated with different classes to be independent. To obtain the representation coefficients, ADDL imposes a sparse l2,1-norm constraint on the coding coefficients instead of using l0 or l1-norm, since the l0 or l1-norm constraint applied in most existing DL criteria makes the training phase time consuming. The codes-extraction projection that bridges data with the sparse codes by extracting special features from the given samples is calculated via minimizing a sparse codes approximation term. Then we compute a linear classifier based on the approximated sparse codes by an analysis mechanism to simultaneously consider the classification and representation powers. Thus, the classification approach of our model is very efficient, because it can avoid the extra time-consuming sparse reconstruction process with trained dictionary for each new test data as most existing DL algorithms. Simulations on real image databases demonstrate that our ADDL model can obtain superior performance over other state-of-the-arts. Copyright © 2019, The Authors. All rights reserved.

关键词： Codes (symbols)

Performance Comparison Between SURF and SIFT for Content-Based image Retrieval

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Performance Comparison Between SURF and SIFT for Content-Bas...

IEEE International Conference on Signal and image processing Applications (ICSIPA)

作者： Najeeb Ur Rehman Malik Awais Gul Airij Sheeraz Ahmed Memon Yasmeen Naz Panhwar Syed A.R. Abu-Bakar Mohamed A. El-Khoreby University of Wollongong New South Wales Australia Computer Vision Video and Image Processing Research Lab School of Electrical Engineering Universiti Teknologi Malaysia UTM Johor Bahru Campus Johor Malaysia Mehran University of Engineering & Technology Jamshoro Sindh Pakistan

Speeded-Up Robust Feature (SURF) and Scale Invariant Feature Transform (SIFT) have been two well-known methods used in extracting features. This paper presents and analyzes performance comparison between the SURF approach and the SIFT technique for content-based image retrieval (CBIR) application. In particular, we are interested in comparing the accuracy and the response time between these two methods. For the testing purposes, we make use sample images obtained for the Pennsylvania State College of Information Science and Technology database. As it turns out, in this paper, we will demonstrate that in terms of accuracy and speed, SURF shows superior performance compared to SIFT.

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Understanding metric-related pitfalls in image analysis validation

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arXiv 2023年

作者： Reinke, Annika Tizabi, Minu D. Baumgartner, Michael Eisenmann, Matthias Heckmann-Nötzel, Doreen Kavur, A. Emre Rädsch, Tim Sudre, Carole H. Acion, Laura Antonelli, Michela Arbel, Tal Bakas, Spyridon Benis, Arriel Blaschko, Matthew B. Buettner, Florian Cardoso, M. Jorge Cheplygina, Veronika Chen, Jianxu Christodoulou, Evangelia Cimini, Beth A. Collins, Gary S. Farahani, Keyvan Ferrer, Luciana Galdran, Adrian van Ginneken, Bram Glocker, Ben Godau, Patrick Haase, Robert Hashimoto, Daniel A. Hoffman, Michael M. Huisman, Merel Isensee, Fabian Jannin, Pierre Kahn, Charles E. Kainmueller, Dagmar Kainz, Bernhard Karargyris, Alexandros Karthikesalingam, Alan Kenngott, Hannes Kleesiek, Jens Kofler, Florian Kooi, Thijs Kopp-Schneider, Annette Kozubek, Michal Kreshuk, Anna Kurc, Tahsin Landman, Bennett A. Litjens, Geert Madani, Amin Maier-Hein, Klaus Martel, Anne L. Mattson, Peter Meijering, Erik Menze, Bjoern Moons, Karel G.M. Müller, Henning Nichyporuk, Brennan Nickel, Felix Petersen, Jens Rafelski, Susanne M. Rajpoot, Nasir Reyes, Mauricio Riegler, Michael A. Rieke, Nicola Saez-Rodriguez, Julio Sánchez, Clara I. Shetty, Shravya Summers, Ronald M. Taha, Abdel A. Tiulpin, Aleksei Tsaftaris, Sotirios A. van Calster, Ben Varoquaux, Gaël Yaniv, Ziv R. Jäger, Paul F. Maier-Hein, Lena Faculty of Mathematics and Computer Science Heidelberg University Heidelberg Germany Heidelberg Division of Intelligent Medical Systems Germany NCT Heidelberg A Partnership Between DKFZ University Medical Center Heidelberg Germany Heidelberg Division of Medical Image Computing Germany Heidelberg Division of Intelligent Medical Systems Germany MRC Unit for Lifelong Health and Ageing UCL Centre for Medical Image Computing Department of Computer Science University College London London United Kingdom School of Biomedical Engineering and Imaging Science King’s College London London United Kingdom Instituto de Cálculo CONICET – Universidad de Buenos Aires Buenos Aires Argentina Centre for Medical Image Computing University College London London United Kingdom McGill University Montreal Canada Division of Computational Pathology Dept of Pathology & Laboratory Medicine Indiana University School of Medicine IU Health Information and Translational Sciences Building Indianapolis United States University of Pennsylvania Richards Medical Research Laboratories FL7 PhiladelphiaPA United States Department of Digital Medical Technologies Holon Institute of Technology Holon Israel European Federation for Medical Informatics Le Mont-sur-Lausanne Switzerland Center for Processing Speech and Images Department of Electrical Engineering KU Leuven Leuven Belgium partner site Frankfurt/Mainz a partnership between DKFZ and UCT Frankfurt Marburg Germany Heidelberg Germany Goethe University Frankfurt Department of Medicine Germany Goethe University Frankfurt Department of Informatics Germany and Frankfurt Cancer Insititute Germany Department of Computer Science IT University of Copenhagen Copenhagen Denmark Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Dortmund Germany Imaging Platform Broad Institute of MIT and Harvard CambridgeMA United States Centre for Statistics in Medicine University of Oxford Oxford United Kingdom Center for Biomedical In

Validation metrics are key for tracking scientific progress and bridging the current chasm between artificial intelligence (AI) research and its translation into practice. However, increasing evidence shows that particularly in image analysis, metrics are often chosen inadequately. While taking into account the individual strengths, weaknesses, and limitations of validation metrics is a critical prerequisite to making educated choices, the relevant knowledge is currently scattered and poorly accessible to individual researchers. Based on a multi-stage Delphi process conducted by a multidisciplinary expert consortium as well as extensive community feedback, the present work provides the first reliable and comprehensive common point of access to information on pitfalls related to validation metrics in image analysis. While focused on biomedical image analysis, the addressed pitfalls generalize across application domains and are categorized according to a newly created, domain-agnostic taxonomy. The work serves to enhance global comprehension of a key topic in image analysis validation. © 2023, CC BY.

关键词： computer vision

Why is the Winner the Best?

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Why is the Winner the Best?

Conference on computer vision and Pattern Recognition (CVPR)

作者： M. Eisenmann A. Reinke V. Weru M. D. Tizabi F. Isensee T. J. Adler S. Ali V. Andrearczyk M. Aubreville U. Baid S. Bakas N. Balu S. Bano J. Bernal S. Bodenstedt A. Casella V. Cheplygina M. Daum M. De Bruijne A. Depeursinge R. Dorent J. Egger D. G. Ellis S. Engelhardt M. Ganz N. Ghatwary G. Girard P. Godau A. Gupta L. Hansen K. Harada M. Heinrich N. Heller A. Hering A. Huaulmé P. Jannin A. E. Kavur O. Kodym M. Kozubek J. Li H. Li J. Ma C. Martín-Isla B. Menze A. Noble V. Oreiller N. Padoy S. Pati K. Payette T. Rädsch J. Rafael-Patiño V. Singh Bawa S. Speidel C. H. Sudre K. Van Wijnen M. Wagner D. Wei A. Yamlahi M. H. Yap C. Yuan M. Zenk A. Zia D. Zimmerer D. Aydogan B. Bhattarai L. Bloch R. Brüngel J. Cho C. Choi Q. Dou I. Ezhov C. M. Friedrich C. Fuller R. R. Gaire A. Galdran Á. García Faura M. Grammatikopoulou S. Hong M. Jahanifar I. Jang A. Kadkhodamohammadi I. Kang F. Kofler S. Kondo H. Kuijf M. Li M. Luu T. Martinčič P. Morais M. A. Naser B. Oliveira D. Owen S. Pang J. Park S. Park S. Płotka E. Puybareau N. Rajpoot K. Ryu N. Saeed A. Shephard P. Shi D. Štepec R. Subedi G. Tochon H. R. Torres H. Urien J. L. Vilaça K. A. Wahid H. Wang J. Wang L. Wang X. Wang B. Wiestler M. Wodzinski F. Xia J. Xie Z. Xiong S. Yang Y. Yang Z. Zhao K. Maier-Hein P. F. Jäger A. Kopp-Schneider L. Maier-Hein Division of Intelligent Medical Systems German Cancer Research Center (DKFZ) Heidelberg Germany Helmholtz Imaging German Cancer Research Center (DKFZ) Heidelberg Germany Faculty of Mathematics and Computer Science Heidelberg University Heidelberg Germany Division of Biostatistics German Cancer Research Center (DKFZ) Heidelberg Germany Division of Medical Image Computing German Cancer Research Center (DKFZ) Heidelberg Germany Faculty of Engineering and Physical Sciences School of Computing University of Leeds Leeds UK Institute of Informatics School of Management HES-SO Valais-Wallis University of Applied Sciences and Arts Western Switzerland Sierre Switzerland Department of Nuclear Medicine and Molecular Imaging Lausanne University Hospital Lausanne Switzerland Technische Hochschule Ingolstadt Ingolstadt Germany Center for Artificial Intelligence and Data Science for Integrated Diagnostics (AI2D) and Center for Biomedical Image Computing and Analytics (CBICA) University of Pennsylvania Philadelphia PA USA Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Department of Radiology Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Department of Radiology University of Washington Seattle WA USA Department of Computer Science Wellcome/EPSRC Centre for Interventional and Surgical Sciences (WEISS) University College London London UK Universitat Autònoma de Barcelona & Computer Vision Center Barcelona Spain Division of Translational Surgical Oncology National Center for Tumor Diseases (NCT/UCC) Dresden Dresden Germany Department of Advanced Robotics Istituto Italiano di Tecnologia Italy Department of Electronics Information and Bioengineering Politecnico di Milano Milan Italy IT University of Copenhagen Copenhagen Denmark Department of General Visceral and Transplantation Surgery Heidelberg University Hospital Heidelberg Germany Department of Radiology and Nuc

International benchmarking competitions have become fundamental for the comparative performance assessment of image analysis methods. However, little attention has been given to investigating what can be learnt from these competitions. Do they really generate scientific progress? What are common and successful participation strategies? What makes a solution superior to a competing method? To address this gap in the literature, we performed a multicenter study with all 80 competitions that were conducted in the scope of IEEE ISBI 2021 and MICCAI 2021. Statistical analyses performed based on comprehensive descriptions of the submitted algorithms linked to their rank as well as the underlying participation strategies revealed common characteristics of winning solutions. These typically include the use of multi-task learning (63%) and/or multi-stage pipelines (61%), and a focus on augmentation (100%), image preprocessing (97%), data curation (79%), and post-processing (66%). The “typical” lead of a winning team is a computer scientist with a doctoral degree, five years of experience in biomedical image analysis, and four years of experience in deep learning. Two core general development strategies stood out for highly-ranked teams: the reflection of the metrics in the method design and the focus on analyzing and handling failure cases. According to the organizers, 43% of the winning algorithms exceeded the state of the art but only 11% completely solved the respective domain problem. The insights of our study could help researchers (1) improve algorithm development strategies when approaching new problems, and (2) focus on open research questions revealed by this work.

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OCTAVA: An open-source toolbox for quantitative analysis of optical coherence tomography angiography images

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arXiv 2021年

作者： Untracht, Gavrielle R. Matos, Rolando Dikaios, Nikolaos Bapir, Mariam Durrani, Abdullah K. Butsabong, Teemapron Campagnolo, Paola Sampson, David D. Heiss, Christian Sampson, Danuta M. Optical+Biomedical Engineering Laboratory School of Electrical Electronic and Computer Engineering The University of Western Australia 35 Stirling Highway PerthWA6009 Australia Surrey Biophotonics Advanced Technology Institute School of Physics School of Biosciences and Medicine University of Surrey Surrey GuildfordGU2 7XH United Kingdom Department of Biochemical Sciences Department of Clinical and Experimental Medicine School of Biosciences and Medicine University of Surrey Surrey GuildfordGU2 7XH United Kingdom Mathematics Research Center Academy of Athens Athens106 79 Greece Surrey and Sussex Healthcare NHS Trust East Surrey Hospital Surrey RedhillRH1 5RH United Kingdom Surrey Biophotonics Centre for Vision Speech and Signal Processing School of Biosciences and Medicine The University of Surrey GuildfordGU2 7XH United Kingdom

Optical coherence tomography angiography (OCTA) performs non-invasive visualization and characterization of microvasculature in research and clinical applications mainly in ophthalmology and dermatology. A wide variety of instruments, imaging protocols, processing methods and metrics have been used to describe the microvasculature, such that comparing different study outcomes is currently not feasible. With the goal of contributing to standardization of OCTA data analysis, we report a user-friendly, open-source toolbox, OCTAVA (OCTA Vascular Analyzer), to automate the pre-processing, segmentation, and quantitative analysis of en face OCTA maximum intensity projection images in a standardized workflow. We present each analysis step, including optimization of filtering and choice of segmentation algorithm, and definition of metrics. We perform quantitative analysis of OCTA images from different commercial and non-commercial instruments and samples and show OCTAVA can accurately and reproducibly determine metrics for characterization of microvasculature. Wide adoption could enable studies and aggregation of data on a scale sufficient to develop reliable microvascular biomarkers for early detection, and to guide treatment, of microvascular disease. © 2021, CC BY-NC-SA.

关键词： Optical tomography

Benchmarking quality-dependent and cost-sensitive score-level multimodal biometric fusion algorithms

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arXiv 2021年

作者： Poh, Norman Bourlai, Thirimachos Kittler, Josef Allano, Lorene Alonso-Fernandez, Fernando Ambekar, Onkar Baker, John Dorizzi, Bernadette Fatukasi, Omolara Fierrez, Julian Ganster, Harald Ortega-Garcia, Javier Maurer, Donald Salah, Albert Ali Scheidat, Tobias Vielhauer, Claus Centre for Vision Speech and Signal Processing School of Electronics and Physical Sciences University of Surrey Guildford SurreyGU2 7XH United Kingdom Biometrics Center Lane Department of Computer Science and Electrical Engineering College of Engineering and Mineral Resources West Virginia University MorgantownWV26506-6109 United States Institut Telecom Telecom and Management SudParis Evry91011 France Biometric Recognition Group – ATVS Escuela Politecnica Superior Universidad Autonoma de Madrid Madrid28049 Spain Amsterdam1098 XG Netherlands Applied Physics Laboratory Johns Hopkins University LaurelMD20723 United States Electronics and Physics Department Institut Telecom Telecom and Management SudParis Evry91011 France Institute of Digital Image Processing Joanneum Research Graz8010 Austria ISLA-ISIS University of Amsterdam Amsterdam1098 XG Netherlands Department of Informatics and Media Brandenburg University of Applied Sciences Brandenburg an der HavelD-14770 Germany Research Group Multimedia and Security Department of Technical and Business Information Systems Faculty of Computer Science Otto-von-Guericke-University of Magdeburg MagdeburgD-39106 Germany

Automatically verifying the identity of a person by means of biometrics (e.g., face and fingerprint) is an important application in our day-to-day activities such as accessing banking services and security control in airports. To increase the system reliability, several biometric devices are often used. Such a combined system is known as a multimodal biometric system. This paper reports a benchmarking study carried out within the framework of the BioSecure DS2 (Access Control) evaluation campaign organized by the University of Surrey, involving face, fingerprint, and iris biometrics for person authentication, targeting the application of physical access control in a medium-size establishment with some 500 persons. While multimodal biometrics is a well-investigated subject in the literature, there exists no benchmark for a fusion algorithm comparison. Working towards this goal, we designed two sets of experiments: quality-dependent and cost-sensitive evaluation. The quality-dependent evaluation aims at assessing how well fusion algorithms can perform under changing quality of raw biometric images principally due to change of devices. The cost-sensitive evaluation, on the other hand, investigates how well a fusion algorithm can perform given restricted computation and in the presence of software and hardware failures, resulting in errors such as failure-to-acquire and failure-to-match. Since multiple capturing devices are available, a fusion algorithm should be able to handle this nonideal but nevertheless realistic scenario. In both evaluations, each fusion algorithm is provided with scores from each biometric comparison subsystem as well as the quality measures of both the template and the query data. The response to the call of the evaluation campaign proved very encouraging, with the submission of 22 fusion systems. To the best of our knowledge, this campaign is the first attempt to benchmark quality-based multimodal fusion algorithms. In the presence of changing

关键词： Benchmarking

Machine learning based Gaussian process regression for fault detection of Biological Systems

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Machine learning based Gaussian process regression for fault...

International Conference on Internet of Things, Embedded Systems and Communications (IINTEC)

作者： Radhia Fezai Majdi Mansouri Nasreddine Bouguila Hazem Nounou Mohamed Nounou Laboratory of Automatic Signal and Image Processing National School of Engineers of Monastir University of Monastir Tunisia Electrical and Computer Engineering Program Texas A&M University at Qatar Doha QATAR Chemical Engineering Program Texas A&M University at Qatar Doha Qatar

ISBN: (数字)9781728151847

ISBN: (纸本)9781728151854

Effective detection of faults in Biological processes is essential to observe the continuity of good functioning of the system under typical circumstances for ensuring safety. Therefore, the first objective of this paper is to develop a machine learning based Gaussian process regression (GPR) technique that can accurately model biological processes and compute the monitored residuals. The second objective is to apply a generalized likelihood ratio test (GLRT) to the evaluated residuals for fault detection purposes. The detection performance of the GPR-based GLRT is evaluated using a biological process representing a Cad System in E. Coli (CSEC) model. The GPR-based GLRT is used to enhance monitoring of the Cad System in E. coli process through monitoring some of the key variables involved in this process, such as enzymes, lysine, and cadaverine.

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Reduced Gaussian process regression for fault detection of chemical processes

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Reduced Gaussian process regression for fault detection of c...

International Conference on Internet of Things, Embedded Systems and Communications (IINTEC)

ISBN: (数字)9781728151847

ISBN: (纸本)9781728151854

In this paper, a reduced Gaussian process regression (RGPR)-based generalized likelihood ratio test (GLRT) is proposed for fault detection in industrial systems. In contrast to the classical GPR technique, the RGPR model can handle domains with a large number of activities that require very large training sets. The developed RGPR-based GLRT method aims first to build a RGPR model, then, it consists to apply GLRT to the monitored residuals obtained from PGPR for fault detection purposes. The fault detection performance of the developed RGPR-based GLRT method is illustrated through the Tennessee Eastman process. The simulation results show that the RGPR-based GLRT method outperforms the conventional GPR-based GLRT technique in terms of miss detection rate and CPU-time.

关键词： Gaussian process regression (GPR) reduced Gaussian process regression (RGPR) Kmeans fault detection generalized likelihood ratio test (GLRT) chemical processes

Improving the Robustness of a Direct Visual Odometry Algorithm for Planetary Rovers

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Improving the Robustness of a Direct Visual Odometry Algorit...

International Conference on electrical engineering, Computing Science and Automatic Control (CCE)

作者： Geovanni Martinez Image Processing and Computer Vision Research Laboratory (IPCV-LAB) School of Electrical Engineering University of Costa Rica San José Costa Rica

An algorithm capable of computing the robot position by evaluating measurements of frame to frame intensity differences was extended to be able to detect outliers in the measurements to exclude them from the evaluation to perform the positioning, with the aim of improving its robustness in irregular terrain scenes, such as consisting of flat surfaces with stones on them. The images are taken by a camera firmly attached to the robot, tilted downwards, looking at the planetary surface. A measurement is detected as an outlier only if its intensity difference and linear intensity gradients can not be described by motion compensation. According to the experimental results, this modification reduced the positioning error by a factor of one third in difficult terrain, maintaining its positioning error, which resulted in an average of 1.8%, within a range of 0.15% and 2.5% of distance traveled, similar to those achieved by state of the art algorithms successfully used in robots here on earth and on Mars.

关键词： Three-dimensional displays Cameras Visual odometry Robot vision systems Wheels Extraterrestrial measurements