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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Chen, Ke Han, Xiaosong Li, Xiaoran Liang, Yanchun Xu, Dong Guan, Renchu Jilin University Key Laboratory for Symbol Computation and Knowledge Engineering of National Education Ministry College of Software Changchun China Jilin University Key Laboratory for Symbol Computation and Knowledge Engineering of National Education Ministry College of Computer Science and Technology Changchun China Zhuhai College of Science and Technology Zhuhai Laboratory of Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education School of Computer Science Zhuhai China University of Missouri Christopher S. Bond Life Sciences Center Department of Electrical Engineering and Computer Science Columbia United States

ISBN: (纸本)9798350386226

Drug-Drug Interaction (DDI) task plays a crucial role in clinical treatment and drug development. Recently, deep learning methods have been successfully applied for DDI prediction. However, training deep learning models always need large amount of data, while known DDIs are scarce. To address this challenge, a graph neural network-based DDI prediction model named PNESR-DDI is proposed, which compensates for the lack of DDIs by enriching drug representations. First, to obtain initial node representations that incorporate rich semantic information from the biomedical knowledge graph (KG), a link prediction pre-training method on external KG is proposed in the node embedding pre-training module. Then, considering the large scale of the KG, subgraph extraction for the target drug pairs is introduced to reduce noise and decrease computational complexity in the subgraph anchoring module. After that, the subgraph is updated, and node similarities are propagated in the subgraph reconstruction module. Based on the node similarity scores, the subgraph is pruned and reconstructed, which adjusts node representations to be more conducive to DDI prediction. Finally, the drug embeddings, subgraph representations, and drug fingerprint features are concatenated to predict DDIs. PNESRDDI is evaluated on two benchmark DDI datasets: DrugBank and TWOSIDES. Experiment results show that PNESR-DDI achieves better performance than baselines. Ablation results validate the effectiveness of the pre-training method and the adaptive subgraph reconstruction strategy. © 2024 IEEE.

关键词： Knowledge graph

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Blind Asynchronous Goal-Oriented Detection for Massive Connectivity 21

Blind Asynchronous Goal-Oriented Detection for Massive Conne...

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21st International Symposium on Modeling and Optimization in Mobile, Ad Hoc, and Wireless Networks, WiOpt 2023

作者： Daei, Sajad Razavikia, Saeed Kountouris, Marios Skoglund, Mikael Fodor, Gabor Fischione, Carlo School of Electrical Engineering and Computer Science KTH Royal Institute of Technology Stockholm Sweden Communication Systems Department EURECOM Sophia Antipolis06410 France Ericsson Research Sweden

ISBN: (纸本)9783903176553

Resource allocation and multiple access schemes are instrumental for the success of communication networks, which facilitate seamless wireless connectivity among a growing population of uncoordinated and non-synchronized users. In this paper, we present a novel random access scheme that addresses one of the most severe barriers of current strategies to achieve massive connectivity and ultra reliable and low latency communications for 6G. The proposed scheme utilizes wireless channels’ angular continuous group-sparsity feature to provide low latency, high reliability, and massive access features in the face of limited time-bandwidth resources, asynchronous transmissions, and preamble errors. Specifically, a reconstruction-free goal oriented optimization problem is proposed which preserves the angular information of active devices and is then complemented by a clustering algorithm to assign active users to specific groups. This allows to identify active stationary devices according to their line of sight angles. Additionally, for mobile devices, an alternating minimization algorithm is proposed to recover their preamble, data, and channel gains simultaneously, enabling the identification of active mobile users. Simulation results show that the proposed algorithm provides excellent performance and supports a massive number of devices. Moreover, the performance of the proposed scheme is independent of the total number of devices, distinguishing it from other random access schemes. The proposed method provides a unified solution to meet the requirements of machine-type communications and ultra reliable and low latency communications, making it an important contribution to the emerging 6G networks. © 2023 IFIP.

关键词： Clustering algorithms

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STARGATE: Spatial Transcriptomic Analysis with Recurrent and Graph Attention Techniques using Ensemble Learning

STARGATE: Spatial Transcriptomic Analysis with Recurrent and...

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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Li, Ning Badai, Jiayidaer Chen, Dengjie Xiao, Ming Zhang, Le Sichuan University College of Computer Science Chengdu610065 China Fujian A and F University College of Mechanical and Electrical Engineering Fuzhou350100 China Sichuan University College of Computer Science China University of Chinese Academy of Sciences Key Laboratory of Systems Health Science Zhejiang Province School of Life Science Hangzhou Institute for Advanced Study Chengdu610065 China

ISBN: (纸本)9798350386226

Previous research has identified hematoma as the primary cause of mortality and disability in intraventricular hemorrhage (IVH), yet neurologic outcomes post-IVH have not significantly improved following hematoma evacuation. Therefore, utilizing spatial transcriptomics sequencing technology to acquire and analyze IVH data is of significant importance for the early diagnosis and treatment of acute cerebral hemorrhage. However, existing spatial transcriptomics clustering algorithms often overlook local information, fail to integrate multimodal data, and suffer from performance instability. To address these issues, we developed a multimodal spatial transcriptomics clustering algorithm named STARGATE, which initially captures the global spatial topology and local long-sequence gene set features of cells by integrating Graph Convolutional Networks (GCNs) based on self-attention mechanisms and Long Short-Term Memory networks (LSTMs), subsequently fuses gene expression, tissue imagery, morphological, and spatial coordinate features using Gated Recurrent Units (GRUs), and finally enhances the accuracy and robustness of predictions through ensemble learning methods. Our key experimental results include: (1) In clustering experiments on our proprietary mouse IVH spatial transcriptomics dataset, the STARGATE model achieved Adjusted Rand Index (ARI), Normalized Mutual Information (NMI), and Fowlkes-Mallows Index (FMI) scores of 0.80, 0.84, and 0.82, respectively, all superior to classic algorithms such as stLearn and CCST. (2) In clustering experiments on the mouse IVH dataset, the STARGATE model reached an accuracy of 89.63%, with an excellent confusion matrix, demonstrating outstanding accuracy and stability. (3) In clustering experiments on the public dataset DLFPC, which is known for its high data complexity leading to generally lower clustering metrics, the STARGATE model's ARI, NMI, and FMI indicators still outperformed classic algorithms such as SpaGCN and Seurat. © 2024

关键词： Long short-term memory

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Distributed Learning by Local Training ADMM 63

Distributed Learning by Local Training ADMM

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63rd IEEE Conference on Decision and Control, CDC 2024

作者： Ren, Xiaoxing Bastianello, Nicola Johansson, Karl H. Parisini, Thomas Kth Royal Institute of Technology 2School of Electrical Engineering and Computer Science and Digital Futures Stockholm Sweden Imperial College London Department of Electrical and Electronic Engineering London United Kingdom Aalborg University Department of Electronic Systems Denmark University of Trieste Department of Engineering and Architecture Trieste Italy

ISBN: (纸本)9798350316339

In this paper, we focus on distributed learning over peer-to-peer networks. In particular, we address the challenge of expensive communications (which arise when e.g. training neural networks), by proposing a novel local training algorithm, LTADMM. We extend the distributed ADMM enabling the agents to perform multiple local gradient steps per communication round (local training). We present a preliminary convergence analysis of the algorithm under a graph regularity assumption, and show how the use of local training does not compromise the accuracy of the learned model. We compare the algorithm with the state of the art for a classification task, and in different set-ups. The results are very promising showing a great performance of LT-ADMM, and paving the way for future important theoretical developments. © 2024 IEEE.

关键词： Peer to peer networks

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Brain-Conditional Multimodal Synthesis: A Survey and Taxonomy

IEEE Transactions on Artificial Intelligence

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IEEE Transactions on Artificial Intelligence 2025年第5期6卷 1080-1099页

作者： Mai, Weijian Zhang, Jian Fang, Pengfei Zhang, Zhijun South China University of Technology School of Automation Science and Engineering Guangzhou510640 China Southeast University School of Computer Science and Engineering Nanjing210096 China South China University of Technology Key Library of Autonomous Systems and Network Control Ministry of Education The School of Automation Science and Engineering Guangzhou510640 China Institute for Super Robotics Huangpu Guangzhou510555 China Nanchang University Jiangxi Thousand Talents Plan Nanchang330031 China Jishou University College of Computer Science and Engineering Jishou416000 China Guangdong Artificial Intelligence and Digital Economy Laboratory Pazhou Lab Guangzhou510335 China Shaanxi University of Technology Shaanxi Provincial Key Laboratory of Industrial Automation School of Mechanical Engineering Hanzhong723001 China Changsha Normal University School of Information Science and Engineering Changsha410100 China Guangdong University of Petrochemical Technology School of Automation Science and Engineering Institute of Artificial Intelligence and Automation Maoming525000 China

In the era of artificial intelligence generated content (AIGC), conditional multimodal synthesis technologies (e.g., text-to-image) are dynamically reshaping the natural content. Brain signals, serving as potential reflections of how the brain interprets external information, exhibit a distinctive one-to-many correspondence with various external modalities. This correspondence makes brain signals emerge as a promising guiding condition for multimodal synthesis (e.g., image, text, and audio), which is crucial for developing practical brain–computer interface systems and unraveling complex mechanisms underlying human perception. This survey comprehensively examines the emerging field of brain-conditional multimodal synthesis, termed AIGC-brain, to delineate the current landscape and future directions. To begin, related neuroimaging datasets and generative models are introduced as the foundation of AIGC-brain decoding and analysis. Next, we present a comprehensive taxonomy according to AIGC-brain methodologies, followed by task-specific representative work and implementation details to facilitate in-depth comparison and analysis. Quality assessments are then introduced for both qualitative and quantitative evaluation. Finally, this survey explores insights gained, outlining current challenges and prospects of AIGC-brain. As a pioneering survey, this article paves the way for future advances in AIGC-brain research. © 2020 IEEE.

关键词： Taxonomies

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Design and Stability Analysis of Control System in Multiport Autonomous Reconfigurable Solar Power Plants (MARS) 24

Design and Stability Analysis of Control System in Multiport...

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24th IEEE Workshop on Control and Modeling for Power Electronics, COMPEL 2023

作者： Xia, Qianxue Debnath, Suman Marthi, Phani R.V. Saeedifard, Maryam Energy Systems Integration Control Section Oak Ridge National Lab Knoxville United States School of Electrical and Computer Engineering Georgia Institute of Technology Atlanta United States

ISBN: (纸本)9798350316186

The Multiport Autonomous Reconfigurable Solar Power Plant (MARS) is an integrated photovoltaic (PV) power generation and energy storage system (ESS), that is designed to connect to both alternating current (AC) transmission grids and high-voltage direct current (HVDC) links. It is a three-phase plant consisting of numerous components with a complex hardware and hierarchical control architecture. This paper presents an approach to decouple the multivariable system of MARS using a recursive reduced-order and boundary layer system methodology. This approach enables efficient computation of the control parameters for the Ll, L2, and L3 controllers. To validate the effectiveness of the proposed control strategy, cyclic tests in accordance with pre-defined performance criteria using controller Hardware-in-the-Loop (cHIL) experiments are conducted. The results demonstrate that the MARS system operates consistently under steady-state conditions. Furthermore, the dynamic response of the MARS system to various grid events is analyzed, underlining the resilience of MARS in presence of faults or loss of generation within the connected WECC system. © 2023 IEEE.

关键词： Energy storage

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Secure Resource Allocations for Polarization-Enabled Multiple-Access Cooperative Cognitive Radio Networks With Energy Harvesting Capability

Secure Resource Allocations for Polarization-Enabled Multipl...

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作者： Wang, Fei Zhang, Xi Southwest University College of Electronic and Information Engineering Chongqing400715 China Texas A and M University Networking and Information Systems Laboratory Department of Electrical and Computer Engineering College StationTX77843 United States

We address secure communications over energy-harvesting based orthogonal frequency-division multiple-access (OFDMA) cooperative cognitive radio networks, where one primary user (PU) cooperates with several size-limited secondary users (SUs) in terms of both data transmission and energy harvesting. To improve spectrum utilization and ensure that SU can harvest as much energy as possible, we let the size-limited SUs be equipped with orthogonally dual-polarized antennas (ODPAs). Based on these setting-ups, we propose the polarization-enabled two-phase cooperative framework, where SU transmitters first apply the power splitting technique to harvest energy from radio frequency (RF) signals radiated by the PU, and then use the harvested energy to concurrently transmit their own and the PU's data. Under our proposed framework, we develop three secure resource allocation schemes for scenarios when SUs are untrusted users, which implies that each SU may overhear the PU's and the other SUs' confidential information. For these scenarios, which has hardly been studied, we jointly optimize the allocation of relays, subcarriers, power splitting ratios, and powers when SUs adopt the decode-and-forward (DF) strategy or the amplify-and-forward (AF) strategy to relay the PU's data, with the objective to maximize the total secrecy rate of all SUs while guaranteeing the PU's secrecy rate. Finally, we validate and evaluate our proposed cooperative framework and secure resource allocation schemes through numerical analyses. © 2002-2012 IEEE.

关键词： Secure communication

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Vision transformer-convolution for breast cancer classification using mammography images: A comparative study

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International Journal of Hybrid Intelligent systems 2024年第2期20卷 67-83页

作者： Abimouloud, Mouhamed Laid Bensid, Khaled Elleuch, Mohamed Aiadi, Oussama Kherallah, Monji National Engineering School of Sfax University of Sfax Laboratory of Electrical Engineering (LAGE) University of KASDI Merbah Ouargla National School of Computer Science (ENSI) University of Manouba Artifcial Intelligence and Information Technology Laboratory (LINATI) Kasdi Merbah University Faculty of Sciences University of Sfax Advanced Technologies for Environment and Smart Cities (ATES Unit) University of Sfax

Breast cancer is a significant global health concern, highlighting the critical importance of early detection for effective treatment of women's health. While convolutional networks (CNNs) have been the best for analysing medical images, recent interest has emerged in leveraging vision transformers (ViTs) for medical data analysis. This study aimed to conduct a comprehensive comparison of three systems a self-attention transformer (VIT), a compact convolution transformer (CCT), and a tokenlearner (TVIT) for binary classification of mammography images into benign and cancerous tissue. Thorough experiments were performed using the DDSM dataset, which consists of 5970 benign and 7158 malignant images. The performance accuracy of the proposed models was evaluated, yielding results of 99.81% for VIT, 99.92% for CCT, and 99.05% for TVIT. Additionally, the study compared these results with the current state-of-the-art performance metrics. The findings demonstrate how convolution-attention mechanisms can effectively contribute to the development of robust computer-aided systems for diagnosing breast cancer. Notably, the proposed approach achieves high-performance results while also minimizing the computational resources required and reducing decision time. © 2024 - IOS Press. All rights reserved.

关键词： Breast cancer (BC) computer-aided diagnosis (CAD) convolutional networks (CNN) DDSM mammography vision transformers (VIT)

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Enhanced Grid-Forming Inverter Control Through Integral Sliding Mode Control in a Cascaded Framework 4

Enhanced Grid-Forming Inverter Control Through Integral Slid...

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4th International Conference on Smart Grid and Renewable Energy, SGRE 2024

作者： Rayane, Khaled Rabhi, Abdelhamid Oubbati, Brahim Khalil Benzoubir, Mohammed University of Laghouat LACoSERE Lab Laghouat Algeria Texas A and M University at Qatar Qatar Foundation Department of Electrical and Computer Engineering Doha Qatar University of Picardie Jules Verne Laboratory of Modelisation Information and Systems-MIS France

ISBN: (纸本)9798350306262

The microgrid (MG) relies heavily on the grid-forming inverter (GFI), making it a crucial component. Therefore, precise and adaptable control of the GFI is essential for microgrid operations due to its pivotal role in shaping voltage and regulating frequency. In this context, this paper introduces a Integral Sliding Mode Control (ISMC) based cascaded approach for controlling the GFI system. The primary goal of this control strategy is to produce a three-phase sinusoidal voltage with a specified amplitude while minimizing harmonic distortion in the output voltage under varying load conditions. The key advantage of the proposed GFI controller lies in its ability to deliver superior performance, characterized by low Total Harmonic Distortion (THD), rapid dynamic tracking capabilities, and robustness in the face of load fluctuations. A comparative assessment is conducted between the conventional repetitive controller and the newly proposed method, considering linear and nonlinear load scenarios. The simulation results provide strong validation for the effectiveness of the proposed approach. © 2024 IEEE.

关键词： Sliding mode control

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2D Spectral Transposed Convolutional Neural Network for S-Parameter Predictions 31

2D Spectral Transposed Convolutional Neural Network for S-Pa...

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IEEE 31st Conference on electrical Performance of Electronic Packaging and systems (EPEPS)

作者： Guo, Yiliang Li, Xingchen Swaminathan, Madhavan 3D Systems Packaging Research Center (PRC) School of Electrical and Computer Engineering Georgia Institute of Technology Atlanta GA USA

In packaging problems, S-parameter predictions are necessary. Machine learning methods lead to dimensionality related challenges which we address here through spectral transposed convolutional neural network using 2D ... 详细信息

ISBN: (数字)9781665450751

ISBN: (纸本)9781665450751

关键词： microvia interconnection convolutional neural network up-sampling

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