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DMFVAE:miRNA-disease associations prediction based on deep matrix factorization method with variational autoencoder

Frontiers of Computer science 2024年第6期18卷 259-270页

作者： Pijing WEI Qianqian WANG Zhen GAO Ruifen CAO Chunhou ZHENG Information Materials and Intelligent Sensing Laboratory of Anhui Province Institutes of Physical Science and Information TechnologyAnhui UniversityHefei 230601China Key Lab of Intelligent Computing and Signal Processing of Ministry of Education School of Computer Science and TechnologyAnhui UniversityHefei 230601China Key Lab of Intelligent Computing and Signal Processing of Ministry of Education School of Artificial IntelligenceAnhui UniversityHefei 230601China

MicroRNAs(miRNAs)are closely related to numerous complex human diseases,therefore,exploring miRNA-disease associations(MDAs)can help people gain a better understanding of complex disease *** increasing number of computational methods have been developed to predict ***,the sparsity of the MDAs may hinder the performance of many *** addition,many methods fail to capture the nonlinear relationships of miRNA-disease network and inadequately leverage the features of network and neighbor *** this study,we propose a deep matrix factorization model with variational autoencoder(DMFVAE)to predict potential *** first decomposes the original association matrix and the enhanced association matrix,in which the enhanced association matrix is enhanced by self-adjusting the nearest neighbor method,to obtain sparse vectors and dense vectors,***,the variational encoder is employed to obtain the nonlinear latent vectors of miRNA and disease for the sparse vectors,and meanwhile,node2vec is used to obtain the network structure embedding vectors of miRNA and disease for the dense ***,sample features are acquired by combining the latent vectors and network structure embedding vectors,and the final prediction is implemented by convolutional neural network with channel *** evaluate the performance of DMFVAE,we conduct five-fold cross validation on the HMDD v2.0 and HMDD v3.2 datasets and the results show that DMFVAE performs ***,case studies on lung neoplasms,colon neoplasms,and esophageal neoplasms confirm the ability of DMFVAE in identifying potential miRNAs for human diseases.

关键词： miRNA-disease association deep matrix factorization self-adjusted nearest neighbor variational encoder network structure

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An anti-aliasing filtering of quantum images in spatial domain using a pyramid structure

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Chinese Physics B 2024年第5期33卷 223-237页

作者：吴凯周日贵罗佳 College of Information Engineering Shanghai Maritime UniversityShanghai 201306China Research Center of Intelligent Information Processing and Quantum Intelligent Computing Shanghai 201306China School of Mathematics and Computational Science Shangrao Normal UniversityShangrao 334001China

As a part of quantum image processing,quantum image filtering is a crucial technology in the development of quantum ***-pass filtering can effectively achieve anti-aliasing effects on ***,most quantum image filterings are based on classical domains and grayscale images,and there are relatively fewer studies on anti-aliasing in the quantum *** paper proposes a scheme for anti-aliasing filtering based on quantum grayscale and color image scaling in the spatial *** achieves the effect of anti-aliasing filtering on quantum images during the scaling ***,we use the novel enhanced quantum representation(NEQR)and the improved quantum representation of color images(INCQI)to represent classical *** aliasing phenomena are more pronounced when images are scaled down,this paper focuses only on the anti-aliasing effects in the case of ***,we perform anti-aliasing filtering on the quantum representation of the original image and then use bilinear interpolation to scale down the image,achieving the anti-aliasing *** constructed pyramid model is then used to select an appropriate image for upscaling to the original image ***,the complexity of the circuit is *** to the images experiencing aliasing effects solely due to scaling,applying anti-aliasing filtering to the images results in smoother and clearer ***,the anti-aliasing filtering allows for manual intervention to select the desired level of image smoothness.

关键词： quantum color image processing anti-aliasing filtering algorithm quantum multiplier pyramid model

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Degradation-Trend-Aware Deep Neural Network with Attention Mechanism for Bearing Remaining Useful Life Prediction

IEEE Transactions on Artificial Intelligence

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IEEE Transactions on Artificial Intelligence 2024年第6期5卷 2997-3011页

作者： Liu, Yongkang Pan, Donghui Zhang, Haifeng Zhong, Kai Anhui University Key Laboratory of Intelligent Computing and Signal Processing of the Ministry of Education School of Mathematical Sciences Hefei230601 China Anhui University Key Laboratory of Intelligent Computing and Signal Processing of the Ministry of Education Institutes of Physical Science and Information Technology Hefei230601 China

Remaining useful life (RUL) prediction of bearings has extraordinary significance for prognostics and health management (PHM) of rotating machinery. RUL prediction approaches based on deep learning have been dedicated to finding a nonlinear mapping relationship between nonstationary monitoring data and RUL. However, most existing approaches pay little attention to the degradation trend of diverse health stages of bearing and lack the discriminative power of crucial degradation features, resulting in the loss of some important information associated with RUL. To address this challenge, this article proposes a novel RUL prediction framework based on degradation-trend-aware deep neural network with attention mechanism (DTADAN). First the multidirection features with evident degradation trend are extracted via the analysis of bearing vibration signal from both time-domain and time-frequency domain. Next, the deep neural network architecture with attention mechanism is utilized to adaptively learn the critical degradation features beneficial for RUL prediction. Distinct from the existing approaches, the proposed framework is able to dynamically extract key degradation features of the bearing including degradation trend information and effectively fuse multidirection information to improve RUL prediction accuracy. The performance of the proposed approach is evaluated via case studies on XJTU-SY bearing dataset and PRONOSTIA bearing dataset. Compared with other state-of-the-art approaches, the proposed framework has better predictive accuracy and robustness. Additionally, interpretable analysis is provided to reveal the process of model learning and data characteristics, and the analysis results are helpful in guiding model learning. © 2020 IEEE.

关键词： Deep neural networks

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JDC-GCN: joint diversity and consistency graph convolutional network

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Neural computing and Applications 2025年 1-17页

作者： Lin, Renjie Yao, Jie Wang, Shiping Guo, Wenzhong College of Computer and Data Science Fuzhou University Fuzhou350116 China Fujian Provincial Key Laboratory of Network Computing and Intelligent Information Processing Fuzhou University Fuzhou350116 China

In real-world scenarios, multi-view data comprises heterogeneous features, with each feature corresponding to a specific view. The objective of multi-view semi-supervised classification is to enhance classification performance by leveraging the inherent complementary and consistent information present within diverse views. Nevertheless, many existing frameworks primarily focus on assigning suitable weights to different views while neglecting the importance of consistent information. In this paper, a multi-view semi-supervised classification framework called joint diversity and consistency graph convolutional network (JDC-GCN) is proposed. Firstly, the structure of graph convolutional network is introduced to the multi-view semi-supervised classification, capable of propagating the label information over the topological structure of multi-view data. Secondly, the proposed JDC-GCN captures the complementary and consistent information from multiple views through two indispensable sub-modules, Diversity-GCN and Consistency-GCN, respectively. Finally, the attention mechanism is leveraged to dynamically adjust the weights of various views, allowing us to measure the significance of heterogeneous features and the consistent graph without introducing additional parameters. Comprehensive experiments on eight multi-view datasets are conducted to validate the effectiveness of the JDC-GCN algorithm. The results show that the proposed method exhibits superior classification performance compared to other state-of-the-art methods. © The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature 2025.

关键词： Self-supervised learning

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Integer multiple quantum image scaling based on NEQR and bicubic interpolation

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Chinese Physics B 2024年第4期33卷 259-273页

作者：蔡硕周日贵罗佳陈思哲 College of Information Engineering Shanghai Maritime UniversityShanghai 201306China Research Center of Intelligent Information Processing and Quantum Intelligent Computing Shanghai 201306China College of Merchant Marine Shanghai Maritime UniversityShanghai 201306China School of Mathematics and Computational Science Shangrao Normal UniversityShangrao 334001China

As a branch of quantum image processing,quantum image scaling has been widely ***,most of the existing quantum image scaling algorithms are based on nearest-neighbor interpolation and bilinear interpolation,the quantum version of bicubic interpolation has not yet been *** this work,we present the first quantum image scaling scheme for bicubic interpolation based on the novel enhanced quantum representation(NEQR).Our scheme can realize synchronous enlargement and reduction of the image with the size of 2^(n)×2^(n) by integral ***,the image is represented by NEQR and the original image coordinates are obtained through multiple CNOT ***,16 neighborhood pixels are obtained by quantum operation circuits,and the corresponding weights of these pixels are calculated by quantum arithmetic ***,a quantum matrix operation,instead of a classical convolution operation,is used to realize the sum of convolution of these *** simulation experiments and complexity analysis,we demonstrate that our scheme achieves exponential speedup over the classical bicubic interpolation algorithm,and has better effect than the quantum version of bilinear interpolation.

关键词： quantum image processing image scaling bicubic interpolation quantum circuit

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RECONSTRUCTION-BASED A POSTERIORI ERROR ESTIMATES FOR THE L1 METHOD FOR TIME FRACTIONAL PARABOLIC PROBLEMS

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Journal of Computational Mathematics 2025年第2期43卷 345-368页

作者： Jiliang Cao Aiguo Xiao Wansheng Wang Department of Mathematics Shanghai Normal UniversityShanghai 200234China Hunan Key Laboratory for Computation and Simulation in Science and Engineering&Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education Xiangtan UniversityXiangtan 411105China

In this paper,we study a posteriori error estimates of the L1 scheme for time discretizations of time fractional parabolic differential equations,whose solutions have generally the initial *** derive optimal order a posteriori error estimates,the quadratic reconstruction for the L1 method and the necessary fractional integral reconstruction for the first-step integration are *** using these continuous,piecewise time reconstructions,the upper and lower error bounds depending only on the discretization parameters and the data of the problems are *** numerical experiments for the one-dimensional linear fractional parabolic equations with smooth or nonsmooth exact solution are used to verify and complement our theoretical results,with the convergence ofαorder for the nonsmooth case on a uniform *** recover the optimal convergence order 2-αon a nonuniform mesh,we further develop a time adaptive algorithm by means of barrier function recently *** numerical implementations are performed on nonsmooth case again and verify that the true error and a posteriori error can achieve the optimal convergence order in adaptive mesh.

关键词： Time fractional parabolic differential equations A posteriori error estimates Ll method Fractional integral reconstruction Quadratic reconstruction

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Overlapping community‐based particle swarm optimization algorithm for influence maximization in social networks

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CAAI Transactions on Intelligence Technology 2023年第3期8卷 893-913页

作者： Lei Zhang Yutong Liu Haipeng Yang Fan Cheng Qi Liu Xingyi Zhang Information Materials and Intelligent Sensing Laboratory of Anhui Province Key Laboratory of Intelligent Computing and Signal Processing of Ministry of EducationSchool of Computer Science and TechnologyAnhui UniversityHefeiChina School of Computer Science and Technology University of Science and Technology of ChinaHefeiChina

Influence maximization,whose aim is to maximise the expected number of influenced nodes by selecting a seed set of k influential nodes from a social network,has many applications such as goods advertising and rumour *** the existing influence maximization methods,the community‐based ones can achieve a good balance between effectiveness and ***,this kind of algorithm usually utilise the network community structures by viewing each node as a non‐overlapping *** fact,many nodes in social networks are overlapping ones,which play more important role in influence *** this end,an overlapping community‐based particle swarm opti-mization algorithm named OCPSO for influence maximization in social networks,which can make full use of overlapping nodes,non‐overlapping nodes,and their interactive information is ***,an overlapping community detection algorithm is used to obtain the information of overlapping community structures,based on which three novel evolutionary strategies,such as initialisation,mutation,and local search are designed in OCPSO for better finding influential *** results in terms of influence spread and running time on nine real‐world social networks demonstrate that the proposed OCPSO is competitive and promising comparing to several state‐of‐the‐arts(***,CMA‐IM,CIM,CDH‐SHRINK,CNCG,and CFIN).

关键词： computational intelligence data mining social network

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A knowledge-enhanced interest segment division attention network for click-through rate prediction

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Neural computing and Applications 2024年第34期36卷 21817-21837页

作者： Liu, Zhanghui Chen, Shijie Chen, Yuzhong Su, Jieyang Zhong, Jiayuan Dong, Chen College of Computer and Data Science Fuzhou University Fujian Province Fuzhou350108 China Fujian Provincial Key Laboratory of Network Computing and Intelligent Information Processing Fujian Province Fuzhou350108 China

Click-through rate (CTR) prediction aims to estimate the probability of a user clicking on a particular item, making it one of the core tasks in various recommendation platforms. In such systems, user behavior data are crucial for capturing user interests, which has garnered significant attention from both academia and industry, leading to the development of various user behavior modeling methods. However, existing models still face unresolved issues, as they fail to capture the complex diversity of user interests at the semantic level, refine user interests effectively, and uncover users’ potential interests. To address these challenges, we propose a novel model called knowledge-enhanced Interest segment division attention network (KISDAN), which can effectively and comprehensively model user interests. Specifically, to leverage the semantic information within user behavior sequences, we employ the structure of a knowledge graph to divide user behavior sequence into multiple interest segments. To provide a comprehensive representation of user interests, we further categorize user interests into strong and weak interests. By leveraging both the knowledge graph and the item co-occurrence graph, we explore users’ potential interests from two perspectives. This methodology allows KISDAN to better understand the diversity of user interests. Finally, we extensively evaluate KISDAN on three benchmark datasets, and the experimental results consistently demonstrate that the KISDAN model outperforms state-of-the-art models across various evaluation metrics, which validates the effectiveness and superiority of KISDAN. © The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature 2024.

关键词： Contrastive Learning

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Multi-View Graph Embedding Learning for Image Co-Segmentation and Co-Localization

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IEEE Transactions on Circuits and Systems for Video Technology 2024年第6期34卷 4942-4956页

作者： Huang, Aiping Li, Lijian Zhang, Le Niu, Yuzhen Zhao, Tiesong Lin, Chia-Wen Fuzhou University Fujian Key Laboratory for Intelligent Processing and Wireless Transmission of Media Information College of Physics and Information Engineering Fuzhou350108 China Fuzhou University Fujian Key Laboratory of Network Computing and Intelligent Information Processing College of Computer and Data Science Fuzhou350108 China University of Electronic Science and Technology of China School of Information and Communication Engineering Chengdu611731 China Fuzhou University Fujian Key Laboratory for Intelligent Processing and Wireless Transmission of Media Information College of Physics and Information Engineering The Fujian Science and Technology Innovation Laboratory for Optoelectronic Information Fuzhou350108 China Institute of Communications Engineering National Tsing Hua University Department of Electrical Engineering Hsinchu30013 Taiwan

Image co-segmentation and co-localization exploit inter-image information to identify and extract foreground objects with a batch mode. However, they remain challenging when confronted with large object variations or complex backgrounds. This paper proposes a multi-view graph embedding (MV-Gem) learning scheme which integrates diversity, robustness and discernibility of object features to alleviate this phenomenon. To encourage the diversity, the deep co-information containing both low-layer general representations and high-layer semantic information is generated to form a multi-view feature pool for comprehensive co-object description. To enhance the robustness, a multi-view adaptive weighted learning is formulated to fuse the deep co-information for feature complementation. To ensure the discernibility, the graph embedding and sparse constraint are embedded into the fusion formulation for feature selection. The former aims to inherit important structures from multiple views, and the latter further selects important features to restrain irrelevant backgrounds. With these techniques, MV-Gem gradually recovers all co-objects through optimization iterations. Extensive experimental results on real-world datasets demonstrate that MV-Gem is capable of locating and delineating co-objects in an image group. © 1991-2012 IEEE.

关键词： Semantics

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Mixture of Experts for Audio-Visual Learning 38

Mixture of Experts for Audio-Visual Learning

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38th Conference on Neural information processing Systems, NeurIPS 2024

作者： Cheng, Ying Li, Yang He, Junjie Feng, Rui School of Computer Science Fudan University China Shanghai Key Laboratory of Intelligent Information Processing China Shanghai Collaborative Innovation Center of Intelligent Visual Computing China

With the rapid development of multimedia technology, audio-visual learning has emerged as a promising research topic within the field of multimodal analysis. In this paper, we explore parameter-efficient transfer learning for audio-visual learning and propose the Audio-Visual Mixture of Experts (AVMoE) to inject adapters into pre-trained models flexibly. Specifically, we introduce unimodal and cross-modal adapters as multiple experts to specialize in intra-modal and inter-modal information, respectively, and employ a lightweight router to dynamically allocate the weights of each expert according to the specific demands of each task. Extensive experiments demonstrate that our proposed approach AVMoE achieves superior performance across multiple audio-visual tasks, including AVE, AVVP, AVS, and AVQA. Furthermore, visual-only experimental results also indicate that our approach can tackle challenging scenes where modality information is missing. The source code is available at https://***/yingchengy/AVMOE. © 2024 Neural information processing systems foundation. All rights reserved.

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