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2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023

作者： Lin, Xuan Wen, Qi Yang, Sijie Yu, Zu-Guo Long, Yahui Zeng, Xiangxiang Xiangtan University College of Computer Science China Xiangtan University Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education China Singapore Hunan University College of Information Science and Engineering China

ISBN: (纸本)9798350337488

Drug-drug interaction (DDI) plays an increasingly crucial role in drug discovery. Predicting potential DDI is also essential for clinical research. Given the high cost and risk of wet-lab experiments, in-silico DDI prediction is an alternative choice. Recently, deep learning methods have been developed for DDI prediction. However, most of existing methods focus on feature extraction from either molecular SMILES sequences or drug interactive networks, ignoring the valuable complementary information that can be derived from these two views. In this paper, we propose a novel interpretable Multi-View Attention network (MVA-DDI) for DDI prediction. MVA-DDI can effectively extracts drug representations from different perspectives to improve DDI prediction. Specifically, for a given drug, we design a transformer-based encoder and a graph convolutional networkbased encoder to learn sequence and graph representations from SMILES sequence and molecular graph, respectively. To fully exploit the complementary information between the sequence and molecular views, an attention mechanism is further adopted to adaptively aggregate the sequence and graph representations by taking the importance of different views into accounts, generating the final drug representations. Comparison experiments demonstrated that our MVA-DDI1 model achieved superior performance to state-of-the-art models on DDI prediction. © 2023 IEEE.

关键词： Contrastive learning Drug-drug interaction prediction Interpretable attention network Multi-view learning

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CSCL-DTI: Predicting drug-target interaction through cross-view and self-supervised contrastive learning

CSCL-DTI: Predicting drug-target interaction through cross-v...

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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Lin, Xuan Zhang, Xi Yu, Zu-Guo Long, Yahui Zeng, Xiangxiang Yu, Philip S. Xiangtan University College of Computer Science China Xiangtan University Key Laboratory of Intelligent Computing and Information Processing Ministry of Education China Singapore Hunan University College of Information Science and Engineering China University of Illinois Chicago Department of Computer Science United States

ISBN: (纸本)9798350386226

Accurately predicting drug-target interactions (DTI) is a critical step in drug discovery. Existing methods of DTI prediction primarily employ Simplified Molecular-Input Line-Entry System (SMILES) sequences or molecular graphs to learn drug representations. However, the features learned by such single-view approach is prone to incomplete. While some multiview methods that consider the views of both SMILES sequences and molecular graphs have been developed, these methods often fall in short in capturing potential interactions between views. In this work, we propose a novel dual contrastive learning framework CSCL-DTI for DTI prediction. First, we design a contrastive-enhanced cross-view representation learning (CVRL) to learn representations for drugs. In this module, Transformer-based and graph convolutional network (GCN)-based encoders are separately adopted to learn view-specific representations, followed by contrastive learning to enrich the representations by accounting for the potential interplay between local chemical context and topological structure. Second, we combine Transformer with self-supervised contrastive learning (SSCL) to learn representations for targets by modelling protein amino acids sequences. The scheme allows to effectively preserve the intrinsic characteristics of the sequences. Finally, we introduce a bilinear attention network to obtain an integrated representation by adaptively incorporating drug and target representations. Benchmarking experiments on two datasets demonstrated that CSCL-DTI1 outperforms six state-of-the-art methods. © 2024 IEEE.

关键词： Contrastive Learning

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A Review of Human Mesh Reconstruction: Beyond 2D Video Object Segmentation 16th

A Review of Human Mesh Reconstruction: Beyond 2D Video Obje...

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16th International Conference on Social Robotics, ICSR + InnoBiz 2024

作者： Wu, Peng Wang, Zhicheng Pan, Feiyu Li, Fangkai Hu, Hao Lu, Xiankai Guo, Yiyou School of Software Shandong University Shandong Jinan250000 China School of Mathematics and Computer Science Fujian Provincial Key Laboratory of Data-Intensive Computing Fujian University Laboratory of Intelligent Computing and Information Processing Quanzhou Normal University Quanzhou China

ISBN: (纸本)9789819611508

Video object segmentation aims to extract 2D object masks by segmenting video frames into multiple objects, which is crucial in various practical applications such as medical imaging, etc.. However, traditional video object segmentation methods produce 2D masks, which are not suitable for 3D scenarios where depth information is essential, such as in robotic grasping, virtual reality, and autonomous driving, etc.. In this paper, we present a comprehensive review of 3D human mesh reconstruction (HMR) as an extension beyond 2D video object segmentation. We begin by reviewing the mainstream video object segmentation methods, then transition from 2D video object segmentation to 3D HMR. We further categorize recent HMR methods based on key characteristics that define this research field, including the type of model input and the use of statistical models. Finally, we provide detailed information on HMR datasets and evaluation metrics. © The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd. 2025.

关键词： Mesh generation

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Asymptotically Optimal Sequence Sets With Low/Zero Ambiguity Zone Properties

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IEEE Transactions on information Theory 2025年第6期71卷 4785-4796页

作者： Tian, Liying Song, Xiaoshi Liu, Zilong Li, Yubo Northeastern University School of Computer Science and Engineering Key Laboratory of Intelligent Computing in Medical Image Ministry of Education Shenyang110819 China University of Essex School of Computer Science and Electronics Engineering ColchesterCO4 3SQ United Kingdom Yanshan University School of Information Science and Engineering Qinhuangdao066004 China Hebei Key Laboratory of Information Transmission and Signal Processing Qinhuangdao066004 China

Sequences with low/zero ambiguity zone (LAZ/ZAZ) properties are useful in modern communication and radar systems operating over mobile environments. This paper first presents a new family of ZAZ sequence sets motivated by the "modulating" zero correlation zone (ZCZ) sequences which were first proposed by Popovic and Mauritz. We then introduce a second family of ZAZ sequence sets with comb-like spectrum, whereby the local Doppler resilience is guaranteed by their inherent spectral nulls in the frequency domain. Finally, LAZ sequence sets are obtained by exploiting their connection with a novel class of mapping functions. These proposed unimodular ZAZ and LAZ sequence sets are cyclically distinct and asymptotically optimal with respect to the existing theoretical bounds on ambiguity functions. © 1963-2012 IEEE.

关键词： Frequency domain analysis

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Stochastic SEIR epidemic models with virus mutation and logistic growth of susceptible populations

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Mathematics and Computers in Simulation 2023年第1期212卷 289-309页

作者： Wang, Qi Xiang, Kainan Zhu, Chunhui Zou, Lang Hunan Key Laboratory for Computation and Simulation in Science and Engineering & Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education & School of Mathematics and Computational Science Xiangtan University Hunan Province Xiangtan City411105 China National Center for Applied Mathematics in Hunan China

This article introduces a kind of stochastic SEIR models containing virus mutation and logistic growth of susceptible populations, whose deterministic versions have a positively invariant set and globally asymptotically stable equilibrium points. For these stochastic SEIR epidemic models, we prove they have a unique global positive solution, and also obtain sufficient conditions respectively for survival and extinction of the infectious disease. Eventually, we validate our theoretical findings using numerical simulations. © 2023 International Association for Mathematics and Computers in Simulation (IMACS)

关键词： Viruses

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Data secure transmission intelligent prediction algorithm for mobile industrial IoT networks

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Digital Communications and Networks 2023年第2期9卷 400-410页

作者： Lingwei Xu Hao Yin Hong Jia Wenzhong Lin Xinpeng Zhou Yong Fu Xu Yu Department of Information Science and Technology Qingdao University of Science and TechnologyQingdao266061China Fujian Key Laboratory of Sensing and Computing for Smart Cities Xiamen UniversityXiamen361005China Fujian Provincial Key Laboratory of Information Processing and Intelligent Control(Minjiang University) Fuzhou350121China Faculty of Information Science and Engineering Ocean University of ChinaQingdao266100China Shandong Provincial Key Laboratory of Computer Networks Shandong Computer Science Center(National Supercomputer Center in Jinan)JinanChina

Mobile Industrial Internet of Things(IIoT)applications have achieved the explosive growth in recent *** mobile IIoT has flourished and become the backbone of the industry,laying a solid foundation for the interconnection of all *** variety of application scenarios has brought serious challenges to mobile IIoT networks,which face complex and changeable communication *** data secure transmission is critical for mobile IIoT *** paper investigates the data secure transmission performance prediction of mobile IIoT *** cut down computational complexity,we propose a data secure transmission scheme employing Transmit Antenna Selection(TAS).The novel secrecy performance expressions are first ***,to realize real-time secrecy analysis,we design an improved Convolutional Neural Network(CNN)model,and propose an intelligent data secure transmission performance prediction *** mobile signals,the important features may be removed by the pooling *** will lead to negative effects on the secrecy performance prediction.A novel nine-layer improved CNN model is *** of the input and output layers,it removes the pooling layer and contains six convolution ***,Back-Propagation(BP)and LeNet methods are employed to compare with the proposed *** simulation analysis,good prediction accuracy is achieved by the CNN *** prediction accuracy obtains a 59%increase.

关键词： Mobile IIoT networks Data secure transmission Performance analysis intelligent prediction Improved CNN

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Adaptive Multi-Updating Strategy Based Particle Swarm Optimization

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intelligent Automation & Soft computing 2023年第9期37卷 2783-2807页

作者： Dongping Tian Bingchun Li Jing Liu Chen Liu Ling Yuan Zhongzhi Shi School of Computer Science and Technology Kashi UniversityKashi844006China Key Laboratory of Intelligent Information Processing Institute of Computing TechnologyChinese Academy of SciencesBeijing100190China

Particle swarm optimization(PSO)is a stochastic computation tech-nique that has become an increasingly important branch of swarm intelligence ***,like other evolutionary algorithms,PSO also suffers from premature convergence and entrapment into local optima in dealing with complex multimodal *** this paper puts forward an adaptive multi-updating strategy based particle swarm optimization(abbreviated as AMS-PSO).To start with,the chaotic sequence is employed to generate high-quality initial particles to accelerate the convergence rate of the ***,according to the current iteration,different update schemes are used to regulate the particle search process at different evolution *** be specific,two different sets of velocity update strategies are utilized to enhance the exploration ability in the early evolution stage while the other two sets of velocity update schemes are applied to improve the exploitation capability in the later evolution *** by the unequal weightage of acceleration coefficients is used to guide the search for the global worst particle to enhance the swarm *** addition,an auxiliary update strategy is exclusively leveraged to the global best particle for the purpose of ensuring the convergence of the PSO ***,extensive experiments on two sets of well-known benchmark functions bear out that AMS-PSO outperforms several state-of-the-art PSOs in terms of solution accuracy and convergence rate.

关键词： Particle swarm optimization local optima acceleration coefficients swarm diversity premature convergence

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A Gradient-Guided Evolutionary Approach to Training Deep Neural Networks

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IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2022年第9期33卷 4861-4875页

作者： Yang, Shangshang Tian, Ye He, Cheng Zhang, Xingyi Tan, Kay Chen Jin, Yaochu Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education School of Computer Science and Technology Anhui University Hefei China Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education Institutes of Physical Science and Information Technology Anhui University Hefei China Department of Computer Science and Engineering Guangdong Provincial Key Laboratory of Brain-Inspired Intelligent Computation Southern University of Science and Technology Shenzhen China Department of Computing The Hong Kong Polytechnic University Hong Kong SAR Department of Computer Science University of Surrey Guildford U.K

It has been widely recognized that the efficient training of neural networks (NNs) is crucial to classification performance. While a series of gradient-based approaches have been extensively developed, they are criticized for the ease of trapping into local optima and sensitivity to hyperparameters. Due to the high robustness and wide applicability, evolutionary algorithms (EAs) have been regarded as a promising alternative for training NNs in recent years. However, EAs suffer from the curse of dimensionality and are inefficient in training deep NNs (DNNs). By inheriting the advantages of both the gradient-based approaches and EAs, this article proposes a gradient-guided evolutionary approach to train DNNs. The proposed approach suggests a novel genetic operator to optimize the weights in the search space, where the search direction is determined by the gradient of weights. Moreover, the network sparsity is considered in the proposed approach, which highly reduces the network complexity and alleviates overfitting. Experimental results on single-layer NNs, deep-layer NNs, recurrent NNs, and convolutional NNs (CNNs) demonstrate the effectiveness of the proposed approach. In short, this work not only introduces a novel approach for training DNNs but also enhances the performance of EAs in solving large-scale optimization problems.

关键词： Artificial neural networks Training Optimization Search problems Scalability Complexity theory Genetic algorithms Deep neural networks (DNNs) evolutionary algorithm (EA) genetic operator gradient descent sparsity

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A Finite Element Variational Multiscale Method for Stationary Incompressible Magnetohydrodynamics Equations

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Advances in Applied Mathematics and Mechanics 2023年第5期15卷 1142-1165页

作者： Huayi Huang Yunqing Huang Qili Tang Hunan Key Laboratory for Computation and Simulation in Science and Engineering Key Laboratory of IntelligentComputing&Information Processing of Ministry of EducationSchool of Mathematics and Computational ScienceXiangtan UniversityXiangtanHunan 411105China

In this paper,we propose a variational multiscale method(VMM)for the stationary incompressible magnetohydrodynamics *** method is defined by large-scale spaces for the velocity field and the magnetic field,which aims to solve flows at high Reynolds *** provide a new VMM formulation and prove its stability and ***,some numerical experiments are presented to indicate the optimal convergence of our method.

关键词： Variational multiscale method stationary incompressible magnetohydrodynamics large-scale spaces stability and convergence high Reynolds numbers

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Gradient-Based Differential kWTA Network With Application to Competitive Coordination of Multiple Robots

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IEEE/CAA Journal of Automatica Sinica 2022年第8期9卷 1452-1463页

作者： Mei Liu Xiaoyan Zhang Mingsheng Shang Long Jin School of Information Science and Engineering Lanzhou UniversityLanzhou 730000 State Key Laboratory of Tibetan Intelligent Information Processing and Application Xining 810016China Chongqing Key Laboratory of Big Data and Intelligent Computing Chongqing Institute of Green and Intelligent TechnologyChinese Academy of SciencesChongqing 400714China Shenzhen Research Institute Lanzhou UniversityShenzhen 518063China

Aiming at the k-winners-take-all(kWTA)operation,this paper proposes a gradient-based differential kWTA(GDk WTA)*** obtaining the network,theorems and related proofs are provided to guarantee the exponential convergence and noise resistance of the proposed GD-kWTA ***,numerical simulations are conducted to substantiate the preferable performance of the proposed network as compared with the traditional ***,the GD-k WTA network,backed with a consensus filter,is utilized as a robust control scheme for modeling the competition behavior in the multi-robot coordination,thereby further demonstrating its effectiveness and feasibility.

关键词： Consensus filter k-winners-take-all(kWTA) multirobot coordination noise resistance

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