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Noise subtraction from KAGRA O3GK data using Independent Component Analysis

Classical and Quantum Gravity 2023年第8期40卷 085015-085015页

作者： H Abe T Akutsu M Ando A Araya N Aritomi H Asada Y Aso S Bae Y Bae R Bajpai K Cannon Z Cao E Capocasa M Chan C Chen D Chen K Chen Y Chen C-Y Chiang Y-K Chu S Eguchi M Eisenmann Y Enomoto R Flaminio H K Fong Y Fujii Y Fujikawa Y Fujimoto I Fukunaga D Gao G-G Ge S Ha I P W Hadiputrawan S Haino W-B Han K Hasegawa K Hattori H Hayakawa K Hayama Y Himemoto N Hirata C Hirose T-C Ho B-H Hsieh H-F Hsieh C Hsiung H-Y Huang P Huang Y-C Huang Y-J Huang D C Y Hui S Ide K Inayoshi Y Inoue K Ito Y Itoh C Jeon H-B Jin K Jung P Jung K Kaihotsu T Kajita M Kakizaki M Kamiizumi N Kanda T Kato K Kawaguchi C Kim J Kim J C Kim Y-M Kim N Kimura T Kiyota Y Kobayashi K Kohri K Kokeyama A K H Kong N Koyama C Kozakai J Kume Y Kuromiya S Kuroyanagi K Kwak E Lee H W Lee R Lee M Leonardi K L Li P Li L C -C Lin C-Y Lin E T Lin F-K Lin F-L Lin H L Lin G C Liu L-W Luo M Ma’arif E Majorana Y Michimura N Mio O Miyakawa K Miyo S Miyoki Y Mori S Morisaki N Morisue Y Moriwaki K Nagano K Nakamura H Nakano M Nakano Y Nakayama T Narikawa L Naticchioni L Nguyen Quynh W-T Ni T Nishimoto A Nishizawa S Nozaki Y Obayashi W Ogaki J J Oh K Oh M Ohashi T Ohashi M Ohkawa H Ohta Y Okutani K Oohara S Oshino S Otabe K-C Pan A Parisi J Park F E Pe na Arellano S Saha Y Saito K Sakai T Sawada Y Sekiguchi L Shao Y Shikano H Shimizu K Shimode H Shinkai T Shishido A Shoda K Somiya I Song R Sugimoto J Suresh T Suzuki H Tagoshi H Takahashi R Takahashi S Takano H Takeda M Takeda K Tanaka T Tanaka S Tanioka A Taruya T Tomaru T Tomura L Trozzo T Tsang J-S Tsao S Tsuchida T Tsutsui D Tuyenbayev N Uchikata T Uchiyama A Ueda T Uehara K Ueno G Ueshima T Ushiba M H P M van Putten J Wang T Washimi C Wu H Wu T Yamada K Yamamoto T Yamamoto K Yamashita R Yamazaki Y Yang S Yeh J Yokoyama T Yokozawa T Yoshioka H Yuzurihara S Zeidler M Zhan H Zhang Y Zhao Z-H Zhu The KAGRA Collaboration Graduate School of Science Tokyo Institute of Technology Meguro-ku Tokyo 152-8551 Japan Gravitational Wave Science Project National Astronomical Observatory of Japan (NAOJ) Mitaka City Tokyo 181-8588 Japan Advanced Technology Center National Astronomical Observatory of Japan (NAOJ) Mitaka City Tokyo 181-8588 Japan Department of Physics The University of Tokyo Bunkyo-ku Tokyo 113-0033 Japan Research Center for the Early Universe (RESCEU) The University of Tokyo Bunkyo-ku Tokyo 113-0033 Japan Earthquake Research Institute The University of Tokyo Bunkyo-ku Tokyo 113-0032 Japan Department of Mathematics and Physics Gravitational Wave Science Project Hirosaki University Hirosaki City Aomori 036-8561 Japan Kamioka Branch National Astronomical Observatory of Japan (NAOJ) Kamioka-cho Hida City Gifu 506-1205 Japan The Graduate University for Advanced Studies (SOKENDAI) Mitaka City Tokyo 181-8588 Japan Korea Institute of Science and Technology Information (KISTI) Yuseong-gu Daejeon 34141 Republic of Korea National Institute for Mathematical Sciences Yuseong-gu Daejeon 34047 Republic of Korea School of High Energy Accelerator Science The Graduate University for Advanced Studies (SOKENDAI) Tsukuba City Ibaraki 305-0801 Japan Department of Astronomy Beijing Normal University Beijing 100875 People’s Republic of China Department of Applied Physics Fukuoka University Jonan Fukuoka City Fukuoka 814-0180 Japan Department of Physics Tamkang University Danshui Dist. New Taipei City 25137 Taiwan Department of Physics and Institute of Astronomy National Tsing Hua University Hsinchu 30013 Taiwan Department of Physics Center for High Energy and High Field Physics National Central University Zhongli District Taoyuan City 32001 Taiwan Department of Physics National Tsing Hua University Hsinchu 30013 Taiwan Institute of Physics Academia Sinica Nankang Taipei 11529 Taiwan Univ. Grenoble Alpes Laboratoire d’Annecy de Physique des Particules (LAPP) Université Savoie M

During April 7–21 2020, KAGRA conducted its first scientific observation in conjunction with the GEO600 detector. The dominant noise sources during this run were found to be suspension control noise in the low-frequency range and acoustic noise in the mid-frequency range. In this study, we show that their contributions in the observational data can be reduced by a signal processing method called independent component analysis (ICA). The model of ICA is extended from that studied in the initial KAGRA data analysis to account for frequency dependence, while the linearity and stationarity of the coupling between the interferometer and the noise sources are still assumed. We identify optimal witness sensors in the application of ICA, leading to successful mitigation of these two dominant contributions. We also analyze the stability of the transfer functions for the entire two weeks of data to investigate the applicability of the proposed subtraction method in gravitational wave searches.

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Overview of KAGRA : Data transfer and management

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Progress of Theoretical and Experimental Physics 2023年第10期2023卷

作者： Akutsu, T Ando, M Arai, K Arai, Y Araki, S Araya, A Aritomi, N Asada, H Aso, Y Bae, S Bae, Y Baiotti, L Bajpai, R Barton, M A Cannon, K Cao, Z Capocasa, E Chan, M Chen, C Chen, K Chen, Y Chiang, C-Y Chu, H Chu, Y-K Eguchi, S Enomoto, Y Flaminio, R Fujii, Y Fujikawa, Y Fukunaga, M Fukushima, M Gao, D Ge, G Ha, S Hagiwara, A Haino, S Han, W-B Hasegawa, K Hattori, K Hayakawa, H Hayama, K Himemoto, Y Hiranuma, Y Hirata, N Hirose, E Hong, Z Hsieh, B Huang, G-Z Huang, H-Y Huang, P Huang, Y-C Huang, Y Hui, D C Y Ide, S Ikenoue, B Imam, S Inayoshi, K Inoue, Y Ioka, K Ito, K Itoh, Y Izumi, K Jeon, C Jin, H-B Jung, K Jung, P Kaihotsu, K Kajita, T Kakizaki, M Kamiizumi, M Kanda, N Kang, G Kawaguchi, K Kawai, N Kawasaki, T Kim, C Kim, J Kim, J C Kim, W S Kim, Y-M Kimura, N Kita, N Kitazawa, H Kobayashi, Y Kojima, Y Kokeyama, K Komori, K Kong, A K H Kotake, K Kozakai, C Kozu, R Kumar, R Kume, J Kuo, C Kuo, H-S Kuromiya, Y Kuroyanagi, S Kusayanagi, K Kwak, K Lee, H K Lee, H W Lee, R Leonardi, M Li, K L Lin, L C-C Lin, C-Y Lin, F-K Lin, F-L Lin, H L Liu, G C Luo, L-W Majorana, E Marchio, M Michimura, Y Mio, N Miyakawa, O Miyamoto, A Miyazaki, Y Miyo, K Miyoki, S Mori, Y Morisaki, S Moriwaki, Y Nagano, K Nagano, S Nakamura, K Nakano, H Nakano, M Nakashima, R Nakayama, Y Narikawa, T Naticchioni, L Negishi, R Quynh, L Nguyen Ni, W-T Nishizawa, A Nozaki, S Obuchi, Y Ogaki, W Oh, J J Oh, K Oh, S H Ohashi, M Ohashi, T Ohishi, N Ohkawa, M Ohta, H Okutani, Y Okutomi, K Oohara, K Ooi, C Oshino, S Otabe, S Pan, K Pang, H Parisi, A Park, J Arellano, F E Peña Pinto, I Sago, N Saito, S Saito, Y Sakai, K Sakai, Y Sakuno, Y Sasaki, Y Sato, S Sato, T Sawada, T Sekiguchi, T Sekiguchi, Y Shao, L Shibagaki, S Shimizu, R Shimoda, T Shimode, K Shinkai, H Shishido, T Shoda, A Somiya, K Son, E J Sotani, H Sugimoto, R Suresh, J Suzuki, T Tagoshi, H Takahashi, H Takahashi, R Takamori, A Takano, S Takeda, H Takeda, M Tanaka, H Tanaka, K Tanaka, T Tanioka, S Martin, E N Tapia San Telada, S Tomaru, T Tomigami, Y Tomura, T Travasso, F Trozzo, L Tsang, T Ts Gravitational Wave Science Project National Astronomical Observatory of Japan (NAOJ) 2-21-1 Osawa Mitaka City Tokyo 181-8588 Japan Advanced Technology Center National Astronomical Observatory of Japan (NAOJ) 2-21-1 Osawa Mitaka City Tokyo 181-8588 Japan Department of Physics The University of Tokyo 7-3-1 Hongo Bunkyo-ku Tokyo 113-0033 Japan Research Center for the Early Universe (RESCEU) The University of Tokyo 7-3-1 Hongo Bunkyo-ku Tokyo 113-0033 Japan Institute for Cosmic Ray Research (ICRR) KAGRA Observatory The University of Tokyo 5-1-5 Kashiwa-no-Ha Kashiwa City Chiba 277-8582 Japan Accelerator Laboratory High Energy Accelerator Research Organization (KEK) 1-1 Oho Tsukuba City Ibaraki 305-0801 Japan Earthquake Research Institute The University of Tokyo 1-1-1 Yayoi Bunkyo-ku Tokyo 113-0032 Japan Department of Mathematics and Physics Hirosaki University 3 Bunkyo-cho Hirosaki City Aomori 036-8561 Japan Kamioka Branch National Astronomical Observatory of Japan (NAOJ) 238 Higashi-Mozumi Kamioka-cho Hida City Gifu 506-1205 Japan The Graduate University for Advanced Studies (SOKENDAI) 2-21-1 Osawa Mitaka City Tokyo 181-8588 Japan Korea Institute of Science and Technology Information (KISTI) 245 Daehak-ro Yuseong-gu Daejeon 34141 Korea National Institute for Mathematical Sciences 70 Yuseong-daero 1689 Beon-gil Yuseong-gu Daejeon 34047 Korea International College Osaka University 1-1 Machikaneyama-cho Toyonaka City Osaka 560-0043 Japan School of High Energy Accelerator Science The Graduate University for Advanced Studies (SOKENDAI) 1-1 Oho Tsukuba City Ibaraki 305-0801 Japan Department of Astronomy Beijing Normal University No. 19 Xinjiekou Street Beijing 100875 China Department of Applied Physics Fukuoka University 8-19-1 Nanakuma Jonan Fukuoka City Fukuoka 814-0180 Japan Department of Physics Tamkang University No. 151 Yingzhuan Rd. Danshui Dist. New Taipei City 25137 Taiwan Department of Physics and Institute of Astronomy Nation

KAGRA is a newly built gravitational wave observatory, a laser interferometer with a 3 km arm length, located in Kamioka, Gifu prefecture, Japan. In this article, we describe the KAGRA data management system, i.e., recording of data, transfer from the KAGRA experiment site to computing resources, as well as data distribution to tier sites, including international sites in Taiwan and Korea. The amount of KAGRA data exceeded 1.0 PiB and increased by about 1.5 TB per day during operation in 2020. Our system has succeeded in data management, and has achieved performance that can withstand observations after 2023, that is, a transfer rate of 20 MB s-1or more and file storage of sufficient capacity for petabyte class. We also discuss the sharing of data between the global gravitational-wave detector network with other experiments, namely LIGO and Virgo. The latency, which consists of calculation of calibrated strain data and transfer time within the global network, is very important from the view of multi-messenger astronomy using gravitational waves. Real-time calbrated data delivered from the KAGRA detector site and other detectors to our computing system arrive with about 4–15 seconds of latency. These latencies are sufficiently short compared to the time taken for gravitational wave event search computations. We also established a high-latency exchange of offline calibrated data that was aggregated with a better accuracy compared with real-time data.

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Radiative Cooling of the Thermally Isolated System in KAGRA Gravitational Wave Telescope

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Journal of Physics: Conference Series 2021年第1期1857卷

作者： T. Akutsu M. Ando K. Arai Y. Arai S. Araki A. Araya N. Aritomi Y. Aso S.-W. Bae Y.-B. Bae L. Baiotti R. Bajpai M. A. Barton K. Cannon E. Capocasa M.-L. Chan C.-S. Chen K.-H. Chen Y.-R. Chen H.-Y. Chu Y.-K. Chu S. Eguchi Y. Enomoto R. Flaminio Y. Fujii M. Fukunaga M. Fukushima G.-G. Ge A. Hagiwara S. Haino K. Hasegawa H. Hayakawa K. Hayama Y. Himemoto Y. Hiranuma N. Hirata E. Hirose Z. Hong B.-H. Hsieh G.-Z. Huang P.-W. Huang Y.-J. Huang B. Ikenoue S. Imam K. Inayoshi Y. Inoue K. Ioka Y. Itoh K. Izumi K. Jung P. Jung T. Kajita M. Kamiizumi N. Kanda G.-W. Kang K. Kawaguchi N. Kawai T. Kawasaki C. Kim J. Kim W. Kim Y.-M. Kim N. Kimura N. Kita H. Kitazawa Y. Kojima K. Kokeyama K. Komori A. K. H. Kong K. Kotake C. Kozakai R. Kozu R. Kumar J. Kume C.-M. Kuo H.-S. Kuo S. Kuroyanagi K. Kusayanagi K. Kwak H.-K. Lee H.-W. Lee R.-K. Lee M. Leonardi C.-Y. Lin F.-L. Lin L. C.-C. Lin G.-C. Liu L.-W. Luo M. Marchio Y. Michimura N. Mio O. Miyakawa A. Miyamoto Y. Miyazaki K. Miyo S. Miyoki S. Morisaki Y. Moriwaki K. Nagano S. Nagano K. Nakamura H. Nakano M. Nakano R. Nakashima T. Narikawa R. Negishi W.-T. Ni A. Nishizawa Y. Obuchi W. Ogaki J. J. Oh S.-H. Oh M. Ohashi N. Ohishi M. Ohkawa K. Okutomi K. Oohara C.-P. Ooi S. Oshino K.-C. Pan H.-F. Pang J. Park F. E. Peiia Arellano I. Pinto N. Sago S. Saito Y. Saito K. Sakai Y. Sakai Y. Sakuno S. Sato T. Sato T. Sawada T. Sekiguchi Y. Sekiguchi S. Shibagaki R. Shimizu T. Shimoda K. Shimode H. Shinkai T. Shishido A. Shoda K. Somiya E. J. Son H. Sotani R. Sugimoto T. Suzuki H. Tagoshi H. Takahashi R. Takahashi A. Takamori S. Takano H. Takeda M. Takeda H. Tanaka K. Tanaka T. Tanaka S. Tanioka E. N. Tapia San Martin S. Telada T. Tomaru Y. Tomigami T. Tomura F. Travasso L. Trozzo T. T. L. Tsang K. Tsubono S. Tsuchida T. Tsuzuki D. Tuyenbayev N. Uchikata T. Uchiyama A. Ueda T. Uehara K. Ueno G. Ueshima F. Uraguchi T. Ushiba M. H. P. M. van Putten H. Vocca J. Wang C.-M. Wu H.-C. Wu S.-R. Wu W.-R. Xu T. Yamada K. Yamamoto T. Yamamoto K. Yokogawa J. Yokoyama T. Yokozawa T. Yoshioka H. Yuzurihar National Astronomical Observatory of Japan (NAOJ) 2-21-1 Osawa Mitaka-City Tokyo 181-8588 Japan Research Center for the Early Universe (RESCEU) The University of Tokyo 7-3-1 Hongo Bunkyo-ku Tokyo 113-0033 Japan Department of Physics The University of Tokyo 7-3-1 Hongo Bunkyo-ku Tokyo 113-0033 Japan Institute for Cosmic Ray Research (ICRR) The University of Tokyo 5-1-5 Kashiwa-no-Ha Kashiwa-City Chiba 277-8582Japan Accelerator Laboratory High Energy Accelerator Research Organization (KEK) 1-1 OhoTsukuba-City Ibaraki 305-0801 Japan Earthquake Research Institute The University of Tokyo 1-1-1Yayoi Bunkyo-ku Tokyo 113-0032Japan Kamioka Branch National Astronomical Observatory of Japan (NAOJ) 238 Higashi-Mozumi Kamioka-cho Hida-City Gifu Pref. Japan The Graduate University for Advanced Studies (SOKENDAI) 2-21-1 Osawa Mitaka-City Tokyo 181-8588 Japan Korea Institute of Science and Technology Information (KISTI) 245 Daehak-ro Yuseong-gu Daejeon 34141 South Korea National Institute for Mathematical Sciences 70 Yuseong-daero 1689 beon-gil Yuseong-gu Daejeon 34047 South Korea Graduate School of Science Osaka University 1-1 Machikaneyama-cho Toyonaka-City Osaka560-0043 Japan School of High Energy Accelerator Science The Graduate University for Advanced Studies (SOKENDAI) 1-1 Oho Tsukuba-City Ibaraki 305-0801 Japan Institute for Gravitational Research University of Glasgow Kelvin Building G12 8QQ UK Department of Applied Physics Fukuoka University Fukuoka Jonan Nanakuma 814-0180 Japan Department of Physics Tamkang university No.151 Yingzhuan Rd. Danshui Dist. New Taipei-City 25137 Taiwan Department of Physics the Center for High Energy and High Field Physics National Central University No. 300 Zhongda Road Zhongyi District Taiyuan-City 320 Taiwan Institute of Astronomy National Tsing Hua University No. 101 Section 2 Kuang-Fu Road Hsinchu 30013 Taiwan Department of Physics National Tsing Hua University No. 101 Section 2

Radiative cooling of the thermally isolated system is investigated in KAGRA gravitational wave telescope. KAGRA is a laser interferometer-based detector and main mirrors constituting optical cavities are cool down to 20K to reduce noises caused by the thermal fluctuation. The mirror is suspended with the multi-stage pendulum to isolate any vibration. Therefore, this mirror suspension system has few heat links to reduce vibration injection. Thus, this system is mainly cooled down with thermal radiation. In order to understand the process of radiative cooling of the mirror, we analyzed cooling curve based on mass and specific heat. As a result, it was newly found that a cryogenic part called 'cryogenic duct-shield' seems to have large contribution in the beginning of the mirror cooling. This finding will help to design new cooling system for the next generation cryogenic gravitational wave detector.

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Author Correction: Why rankings of biomedical image analysis competitions should be interpreted with care

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Nature communications 2019年第1期10卷 588页

作者： Lena Maier-Hein Matthias Eisenmann Annika Reinke Sinan Onogur Marko Stankovic Patrick Scholz Tal Arbel Hrvoje Bogunovic Andrew P Bradley Aaron Carass Carolin Feldmann Alejandro F Frangi Peter M Full Bram van Ginneken Allan Hanbury Katrin Honauer Michal Kozubek Bennett A Landman Keno März Oskar Maier Klaus Maier-Hein Bjoern H Menze Henning Müller Peter F Neher Wiro Niessen Nasir Rajpoot Gregory C Sharp Korsuk Sirinukunwattana Stefanie Speidel Christian Stock Danail Stoyanov Abdel Aziz Taha Fons van der Sommen Ching-Wei Wang Marc-André Weber Guoyan Zheng Pierre Jannin Annette Kopp-Schneider Division of Computer Assisted Medical Interventions (CAMI) German Cancer Research Center (DKFZ) 69120 Heidelberg Germany. l.maier-hein@dkfz.de. Division of Computer Assisted Medical Interventions (CAMI) German Cancer Research Center (DKFZ) 69120 Heidelberg Germany. Centre for Intelligent Machines McGill University Montreal QC H3A0G4 Canada. Christian Doppler Laboratory for Ophthalmic Image Analysis Department of Ophthalmology Medical University Vienna 1090 Vienna Austria. Science and Engineering Faculty Queensland University of Technology Brisbane QLD 4001 Australia. Department of Electrical and Computer Engineering Department of Computer Science Johns Hopkins University Baltimore MD 21218 USA. CISTIB - Center for Computational Imaging & Simulation Technologies in Biomedicine The University of Leeds Leeds Yorkshire LS2 9JT UK. Department of Radiology and Nuclear Medicine Medical Image Analysis Radboud University Center 6525 GA Nijmegen The Netherlands. Institute of Information Systems Engineering TU Wien 1040 Vienna Austria. Complexity Science Hub Vienna 1080 Vienna Austria. Heidelberg Collaboratory for Image Processing (HCI Heidelberg University 69120 Heidelberg Germany. Centre for Biomedical Image Analysis Masaryk University 60200 Brno Czech Republic. Electrical Engineering Vanderbilt University Nashville TN 37235-1679 USA. Institute of Medical Informatics Universität zu Lübeck 23562 Lübeck Germany. Division of Medical Image Computing (MIC) German Cancer Research Center (DKFZ) 69120 Heidelberg Germany. Institute for Advanced Studies Department of Informatics Technical University of Munich 80333 Munich Germany. Information System Institute HES-SO Sierre 3960 Switzerland. Departments of Radiology Nuclear Medicine and Medical Informatics Erasmus MC 3015 GD Rotterdam The Netherlands. Department of Computer Science University of Warwick Coventry CV4 7AL UK. Department of Radiation Oncology Massachusetts General Hospital Boston MA

In the original version of this Article the values in the rightmost column of Table 1 were inadvertently shifted relative to the other columns. This has now been corrected in the PDF and HTML versions of the Article.

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Genetic drivers of heterogeneity in type 2 diabetes pathophysiology

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Nature 2024年第8003期627卷 347-357页

作者： Ken Suzuki Konstantinos Hatzikotoulas Lorraine Southam Henry J Taylor Xianyong Yin Kim M Lorenz Ravi Mandla Alicia Huerta-Chagoya Giorgio E M Melloni Stavroula Kanoni Nigel W Rayner Ozvan Bocher Ana Luiza Arruda Kyuto Sonehara Shinichi Namba Simon S K Lee Michael H Preuss Lauren E Petty Philip Schroeder Brett Vanderwerff Mart Kals Fiona Bragg Kuang Lin Xiuqing Guo Weihua Zhang Jie Yao Young Jin Kim Mariaelisa Graff Fumihiko Takeuchi Jana Nano Amel Lamri Masahiro Nakatochi Sanghoon Moon Robert A Scott James P Cook Jung-Jin Lee Ian Pan Daniel Taliun Esteban J Parra Jin-Fang Chai Lawrence F Bielak Yasuharu Tabara Yang Hai Gudmar Thorleifsson Niels Grarup Tamar Sofer Matthias Wuttke Chloé Sarnowski Christian Gieger Darryl Nousome Stella Trompet Soo-Heon Kwak Jirong Long Meng Sun Lin Tong Wei-Min Chen Suraj S Nongmaithem Raymond Noordam Victor J Y Lim Claudia H T Tam Yoonjung Yoonie Joo Chien-Hsiun Chen Laura M Raffield Bram Peter Prins Aude Nicolas Lisa R Yanek Guanjie Chen Jennifer A Brody Edmond Kabagambe Ping An Anny H Xiang Hyeok Sun Choi Brian E Cade Jingyi Tan K Alaine Broadaway Alice Williamson Zoha Kamali Jinrui Cui Manonanthini Thangam Linda S Adair Adebowale Adeyemo Carlos A Aguilar-Salinas Tarunveer S Ahluwalia Sonia S Anand Alain Bertoni Jette Bork-Jensen Ivan Brandslund Thomas A Buchanan Charles F Burant Adam S Butterworth Mickaël Canouil Juliana C N Chan Li-Ching Chang Miao-Li Chee Ji Chen Shyh-Huei Chen Yuan-Tsong Chen Zhengming Chen Lee-Ming Chuang Mary Cushman John Danesh Swapan K Das H Janaka de Silva George Dedoussis Latchezar Dimitrov Ayo P Doumatey Shufa Du Qing Duan Kai-Uwe Eckardt Leslie S Emery Daniel S Evans Michele K Evans Krista Fischer James S Floyd Ian Ford Oscar H Franco Timothy M Frayling Barry I Freedman Pauline Genter Hertzel C Gerstein Vilmantas Giedraitis Clicerio González-Villalpando Maria Elena González-Villalpando Penny Gordon-Larsen Myron Gross Lindsay A Guare Sophie Hackinger Liisa Hakaste Sohee Han Andrew T Hattersley Christian Herder Momoko Horikoshi Annie-Green Howard Willa Centre for Genetics and Genomics Versus Arthritis Centre for Musculoskeletal Research Division of Musculoskeletal and Dermatological Sciences University of Manchester Manchester UK. Department of Diabetes and Metabolic Diseases Graduate School of Medicine University of Tokyo Tokyo Japan. Department of Statistical Genetics Osaka University Graduate School of Medicine Suita Japan. Institute of Translational Genomics Helmholtz Zentrum München German Research Center for Environmental Health Neuherberg Germany. konstantinos.hatzikotoulas@helmholtz-munich.de. Institute of Translational Genomics Helmholtz Zentrum München German Research Center for Environmental Health Neuherberg Germany. Center for Precision Health Research National Human Genome Research Institute National Institutes of Health Bethesda MD USA. British Heart Foundation Cardiovascular Epidemiology Unit Department of Public Health and Primary Care University of Cambridge Cambridge UK. Heart and Lung Research Institute University of Cambridge Cambridge UK. Department of Epidemiology School of Public Health Nanjing Medical University Nanjing China. Department of Biostatistics and Center for Statistical Genetics University of Michigan Ann Arbor MI USA. Corporal Michael J. Crescenz VA Medical Center Philadelphia PA USA. Department of Systems Pharmacology and Translational Therapeutics University of Pennsylvania Perelman School of Medicine Philadelphia PA USA. Department of Genetics University of Pennsylvania Perelman School of Medicine Philadelphia PA USA. Programs in Metabolism and Medical and Population Genetics Broad Institute of Harvard and MIT Cambridge MA USA. Diabetes Unit and Center for Genomic Medicine Massachusetts General Hospital Boston MA USA. TIMI Study Group Division of Cardiovascular Medicine Brigham and Women's Hospital Harvard Medical School Boston MA USA. William Harvey Research Institute Barts and the London School of Medicine and Dentistry Queen Mary University of London L

Type 2 diabetes (T2D) is a heterogeneous disease that develops through diverse pathophysiological processes and molecular mechanisms that are often specific to cell type. Here, to characterize the genetic contribution to these processes across ancestry groups, we aggregate genome-wide association study data from 2,535,601 individuals (39.7% not of European ancestry), including 428,452 cases of T2D. We identify 1,289 independent association signals at genome-wide significance (P < 5 × 10) that map to 611 loci, of which 145 loci are, to our knowledge, previously unreported. We define eight non-overlapping clusters of T2D signals that are characterized by distinct profiles of cardiometabolic trait associations. These clusters are differentially enriched for cell-type-specific regions of open chromatin, including pancreatic islets, adipocytes, endothelial cells and enteroendocrine cells. We build cluster-specific partitioned polygenic scores in a further 279,552 individuals of diverse ancestry, including 30,288 cases of T2D, and test their association with T2D-related vascular outcomes. Cluster-specific partitioned polygenic scores are associated with coronary artery disease, peripheral artery disease and end-stage diabetic nephropathy across ancestry groups, highlighting the importance of obesity-related processes in the development of vascular outcomes. Our findings show the value of integrating multi-ancestry genome-wide association study data with single-cell epigenomics to disentangle the aetiological heterogeneity that drives the development and progression of T2D. This might offer a route to optimize global access to genetically informed diabetes care.

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Gene expression imputation across multiple brain regions provides insights into schizophrenia risk (vol 51, pg 659, 2019)

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NATURE GENETICS 2019年第6期51卷 1068-1068页

作者： Huckins, Laura M. Dobbyn, Amanda Ruderfer, Douglas M. Hoffman, Gabriel Wang, Weiqing Pardinas, Antonio F. Rajagopal, Veera M. Als, Thomas D. Nguyen, Hoang T. Girdhar, Kiran Boocock, James Roussos, Panos Fromer, Menachem Kramer, Robin Domenici, Enrico Gamazon, Eric R. Purcell, Shaun Demontis, Ditte Borglum, Anders D. Walters, James T. R. O'Donovan, Michael C. Sullivan, Patrick Owen, Michael J. Devlin, Bernie Sieberts, Solveig K. Cox, Nancy J. Im, Hae Kyung Sklar, Pamela Stahl, Eli A. Pamela Sklar Division of Psychiatric Genomics Icahn School of Medicine at Mount Sinai New York NY USA Department of Genetics and Genomics Icahn School of Medicine at Mount Sinai New York NY USA Department of Psychiatry Icahn School of Medicine at Mount Sinai New York NY USA Icahn Institute for Genomics and Multiscale Biology Icahn School of Medicine at Mount Sinai New York NY USA Vanderbilt University Medical Center Nashville TN USA MRC Centre for Neuropsychiatric Genetics and Genomics Cardiff University Cardiff UK Department of Biomedicine Aarhus University Aarhus Denmark The Lundbeck Foundation Initiative for Integrative Psychiatric Research iPSYCH Denmark Center for Integrative Sequencing Aarhus University Aarhus Denmark Department of Human Genetics David Geffen School of Medicine University of California Los Angeles Los Angeles CA USA Human Brain Collection Core National Institute of Mental Health Bethesda MD USA Laboratory of Neurogenomic Biomarkers Centre for Integrative Biology (CIBIO) University of Trento Trento Italy Clare Hall University of Cambridge Cambridge UK University of North Carolina at Chapel Hill Chapel Hill NC USA Karolinska Institutet Stockholm Sweden Department of Psychiatry University of Pittsburgh Pittsburgh PA USA Systems Biology Sage Bionetworks Seattle WA USA Section of Genetic Medicine Department of Medicine University of Chicago Chicago IL USA Integrated Technology Research Laboratories Pharmaceutical Research Division Takeda Pharmaceutical Company Limited Fujisawa Japan Neuropsychiatry Section Department of Psychiatry Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Neuropsychiatric Signaling Program Department of Psychiatry Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Psychiatry JJ Peters Virginia Medical Center Bronx NY USA Department of Neuroscience Icahn School of Medicine at Mount Sinai New York New York NY USA Friedman Brain Institute

Transcriptomic imputation approaches combine eQTL reference panels with large-scale genotype data in order to test associations between disease and gene expression. These genic associations could elucidate signals in complex genome-wide association study (GWAS) loci and may disentangle the role of different tissues in disease development. We used the largest eQTL reference panel for the dorso-lateral prefrontal cortex (DLPFC) to create a set of gene expression predictors and demonstrate their utility. We applied DLPFC and 12 GTEx-brain predictors to 40,299 schizophrenia cases and 65,264 matched controls for a large transcriptomic imputation study of schizophrenia. We identified 413 genic associations across 13 brain regions. Stepwise conditioning identified 67 non-MHC genes, of which 14 did not fall within previous GWAS loci. We identified 36 significantly enriched pathways, including hexosaminidase-A deficiency, and multiple porphyric disorder pathways. We investigated developmental expression patterns among the 67 non-MHC genes and identified specific groups of pre- and postnatal expression.

关键词： Gene expression Genome-wide association studies Schizophrenia Transcriptomics

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Stroke genetics informs drug discovery and risk prediction across ancestries (vol 611, pg 115, 2022)

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NATURE 2022年第7938期612卷 E7-E7页

作者： Mishra, Aniket Malik, Rainer Hachiya, Tsuyoshi Jurgenson, Tuuli Namba, Shinichi Posner, Daniel C. Kamanu, Frederick K. Koido, Masaru Le Grand, Quentin Shi, Mingyang He, Yunye Georgakis, Marios K. Caro, Ilana Krebs, Kristi Liaw, Yi-Ching Vaura, Felix C. Lin, Kuang Winsvold, Bendik Slagsvold Srinivasasainagendra, Vinodh Parodi, Livia Bae, Hee-Joon Chauhan, Ganesh Chong, Michael R. Tomppo, Liisa Akinyemi, Rufus Roshchupkin, Gennady V. Habib, Naomi Jee, Yon Ho Thomassen, Jesper Qvist Abedi, Vida Carcel-Marquez, Jara Nygaard, Marianne Leonard, Hampton L. Yang, Chaojie Yonova-Doing, Ekaterina Knol, Maria J. Lewis, Adam J. Judy, Renae L. Ago, Tetsuro Amouyel, Philippe Armstrong, Nicole D. Bakker, Mark K. Bartz, Traci M. Bennett, David A. Bis, Joshua C. Bordes, Constance Borte, Sigrid Cain, Anael Ridker, Paul M. Cho, Kelly Chen, Zhengming Cruchaga, Carlos Cole, John W. de Jager, Phil L. de Cid, Rafael Endres, Matthias Ferreira, Leslie E. Geerlings, Mirjam I. Gasca, Natalie C. Gudnason, Vilmundur Hata, Jun He, Jing Heath, Alicia K. Ho, Yuk-Lam Havulinna, Aki S. Hopewell, Jemma C. Hyacinth, I. Hyacinth Inouye, Michael Jacob, Mina A. Jeon, Christina E. Jern, Christina Kamouchi, Masahiro Keene, Keith L. Kitazono, Takanari Kittner, Steven J. Konuma, Takahiro Kumar, Amit Lacaze, Paul Launer, Lenore J. Lee, Keon-Joo Lepik, Kaido Li, Jiang Li, Liming Manichaikul, Ani Markus, Hugh S. Marston, Nicholas A. Meitinger, Thomas Mitchell, Braxton D. Montellano, Felipe A. Morisaki, Takayuki Mosley, Thomas H. Nalls, Mike A. Nordestgaard, Borge G. O'Donnell, Martin J. Okada, Yukinori Onland-Moret, N. Charlotte Ovbiagele, Bruce Peters, Annette Psaty, Bruce M. Rich, Stephen S. Rosand, Jonathan Sabatine, Marc S. Sacco, Ralph L. Saleheen, Danish Sandset, Else Charlotte Salomaa, Veikko Sargurupremraj, Muralidharan Sasaki, Makoto Satizabal, Claudia L. Schmidt, Carsten O. Shimizu, Atsushi Smith, Nicholas L. Sloane, Kelly L. Sutoh, Yoichi Sun, Yan V. Tanno, Kozo Tiedt, Steffen Tatlisumak, Turgut Torres-Aguila, Nuria P. Tiwari, Hemant K. Tregouet, Bordeaux Population Health Research Center University of Bordeaux Inserm UMR 1219 Bordeaux France Department of Public Health Bordeaux University Hospital Bordeaux France Department of Neurology Memory Clinic Bordeaux University Hospital Bordeaux France Department of Neurology Institute for Neurodegenerative Diseases CHU de Bordeaux Bordeaux France Institute for Stroke and Dementia Research (ISD) University Hospital LMU Munich Munich Germany Center for Genomic Medicine Massachusetts General Hospital Boston MA USA Program in Medical and Population Genetics Broad Institute of Harvard and the Massachusetts Institute of Technology Cambridge MA USA Munich Cluster for Systems Neurology Munich Germany German Center for Neurodegenerative Diseases (DZNE) Munich Germany Iwate Tohoku Medical Megabank Organization Iwate Medical University Iwate Japan Estonian Genome Centre Institute of Genomics University of Tartu Tartu Estonia Institute of Mathematics and Statistics University of Tartu Tartu Estonia Department of Computational Biology University of Lausanne Lausanne Switzerland Swiss Institute of Bioinformatics Lausanne Switzerland University Center for Primary Care and Public Health Lausanne Switzerland Department of Statistical Genetics Osaka University Graduate School of Medicine Suita Japan Department of Genome Informatics Graduate School of Medicine The University of Tokyo Tokyo Japan Laboratory for Systems Genetics RIKEN Center for Integrative Medical Sciences Yokohama Japan Laboratory of Statistical Immunology Immunology Frontier Research Center (WPI-IFReC) Osaka University Suita Japan Integrated Frontier Research for Medical Science Division Institute for Open and Transdisciplinary Research Initiatives Osaka University Suita Japan Center for Infectious Disease Education and Research (CiDER) Osaka University Suita Japan Massachusetts Veterans Epidemiology Research and Information Center (MAVERIC) VA Boston Healthcare System Boston MA USA TIMI S

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Cover Picture: Fullerene Derivatives That Bear Aliphatic Chains as Unusual Surfactants: Hierarchical Self-Organization, Diverse Morphologies, and Functions / Model Studies in Heterogeneous Catalysis / Functional Hybrid Materials with Polymer Nanoparticles as Templates / systems Chemistry Approach in Organic Photovoltaics / Unraveling the Mechanism of the Singlet Oxygen Ene Reaction: Recent Computational and Experimental Approaches / Applied Biotransformations in Green Solvents / Nanoparticles for Cultural Heritage Conservation: Calcium and Barium Hydroxide Nanoparticles for Wall Painting Consolidation / Unifying Metal and Brønsted Acid Catalysis—Concepts, Mechanisms, and Classifications / Detection of Carbocationic Species in Zeolites: Large Crystals Pave the Way (Chem. Eur. J. 31/2010)

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Chemistry – A European Journal 2010年第31期16卷 9305-9305页

作者： Hidehiko Asanuma Dr. Hongguang Li Dr. Takashi Nakanishi Dr. Helmuth Möhwald Prof. Dr. H.-J. Freund Anitha Ethirajan Dr. Katharina Landfester Prof. Dr. Frank Würthner Prof. Dr. Klaus Meerholz Prof. Dr. Mariza N. Alberti Dr. Michael Orfanopoulos Prof. Dr. María J. Hernáiz Prof. Dr. Andrés R. Alcántara Prof. Dr. José I. García Prof. Dr. José V. Sinisterra Prof. Dr. Rodorico Giorgi Dr. Moira Ambrosi Dr. Nicola Toccafondi Dr. Piero Baglioni Prof. Magnus Rueping Prof. Rene M. Koenigs Dipl.-Chem. Iuliana Atodiresei Dr. Eli Stavitski Dr. Evgeny A. Pidko Dr. Marianne H. F. Kox Dr. Emiel J. M. Hensen Prof. Dr. Rutger A. van Santen Prof. Dr. Bert M. Weckhuysen Prof. Dr. Max Planck Institute of Colloids and Interfaces Research Campus Golm Potsdam 14424 (Germany) National Institute for Materials Science (NIMS) 1-2-1 Sengen Tsukuba 305-0047 (Japan) Fax: (+81) 29-859-2101 PRESTO Japan Science and Technology Agency (JST) 4-1-8 Honcho Kawaguchi Saitama (Japan) Fritz Haber Institute of the Max Planck Society Department of Chemical Physics Faradayweg 4-6 14195 Berlin (Germany) Fax: (+49) 30-8413-4101 Max Planck Institute for Polymer Research Ackermannweg 10 55128 Mainz (Germany) Fax: (+49) 6131-379-370 Current Address: Institute for Materials Research (IMO) Hasselt University Wetenschapspark 1 3590 Diepenbeek (Belgium) Universität Würzburg Institut für Organische Chemie und Röntgen Research Center for Complex Material Systems Am Hubland 97074 Würzburg (Germany) Fax: (+49) 931-31-84756 Department Chemie Universität zu Köln Luxemburger Strasse 116 50939 Köln (Germany) Fax: (+49) 221-470-5144 Department of Chemistry University of Crete 71003 Voutes Campus Heraklion Crete (Greece) Fax: (+30) 2810-545001 Grupo de Biotransformacione Departamento de Química Orgánica y Farmacéutica Facultad de Farmacia Universidad Complutense de Madrid Plaza Ramón y Cajal s/n 28040 Madrid (Spain) Fax: (+34) 913941820 Servicio de Interacciones Moleculares Parque Cientifico de Madrid Facultad de Farmacia Universidad Complutense de Madrid Plaza Ramón y Cajal s/n 28040 Madrid (Spain) Fax: (+34)913941820 Instituto de Ciencias de Materiales de Aragón Departamento de Química Orgánica Facultad de Ciencias CSIC-Universidad de Zaragoza C/Pedro Carbuna 12 50009 Zaragoza (Spain) Servicio de Biotransformaciones Industriales Parque Científico de Madrid C/Santiago Grisolía 2 28760 Tres Cantos Madrid (Spain) Department of Chemistry & CSGI University of Florence via della Lastruccia 3-50019 (Italy) Fax: (+39) *** Institute of Organic Chemistry RWTH Aachen University Landoltweg 1 52074 Aachen Fax: (+49) 241 80 92665 Inorganic Chemistry and Catalysis Group Debye Institu

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Author Correction: Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea

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Nature genetics 2024年第6期56卷 1320页

作者： Aamir W Khan Vanika Garg Shuai Sun Saurabh Gupta Olga Dudchenko Manish Roorkiwal Annapurna Chitikineni Philipp E Bayer Chengcheng Shi Hari D Upadhyaya Abhishek Bohra Chellapilla Bharadwaj Reyazul Rouf Mir Kobi Baruch Bicheng Yang Clarice J Coyne Kailash C Bansal Henry T Nguyen Gil Ronen Erez Lieberman Aiden Erik Veneklaas Kadambot H M Siddique Xin Liu David Edwards Rajeev K Varshney Center of Excellence in Genomics and Systems Biology International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) Patancheru India. School of Biological Sciences University of Western Australia Perth Western Australia Australia. Division of Plant Science and Technology University of Missouri Columbia MO USA. Centre for Crop and Food Innovation WA State Agricultural Biotechnology Centre Food Futures Institute Murdoch University Murdoch Western Australia Australia. BGI Research Qingdao China. Curtin Health Innovation Research Institute (CHIRI) Curtin Medical School Curtin University Perth Western Australia Australia. Department of Molecular and Human Genetics Center for Genome Architecture Baylor College of Medicine Houston TX USA. Khalifa Center for Genetic Engineering and Biotechnology United Arab Emirates University Al-Ain United Arab Emirates. Plant Genome Mapping Laboratory The University of Georgia Athens GA USA. ICAR- Indian Agricultural Research Institute (IARI) New Delhi India. Division of Genetics and Plant Breeding Faculty of Agriculture (FoA) SKUAST-KashmirWadura Campus Kashmir India. NRGene Ltd Park HaMada Ness Ziona Israel. BGI-Australia Herston Queensland Australia. USDA-ARS Plant Germplasm Introduction and Testing Washington State University Pullman WA USA. National Academy of Agricultural Sciences (NAAS) NASC Complex New Delhi India. UWA Institute of Agriculture and School of Agriculture and Environment University of Western Australia Perth Western Australia Australia. BGI Research Qingdao China. liuxin@***. BGI Research Shenzhen China. liuxin@***. School of Biological Sciences University of Western Australia Perth Western Australia Australia. dave.edwards@uwa.edu.au. Center of Excellence in Genomics and Systems Biology International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) Patancheru India. rajeev.varshney@murdoch.edu.au. Centre for Crop and Food Innovation WA State Agricultural Biotechnology

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Status of the Horizon 2020 EuPRAXIA conceptual design study

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Journal of Physics: Conference Series 2019年第1期1350卷

作者： M K Weikum T Akhter D Alesini A S Alexandrova M P Anania N E Andreev I A Andriyash A Aschikhin R W Assmann T Audet A Bacci I F Barna A Beaton A Beck A Beluze A Bernhard S Bielawski F G Bisesto F Brandi R Brinkmann E Bruendermann M Büscher M H Bussmann G Bussolino A Chance M Chen E Chiadroni A Cianchi J A Clarke J Cole M E Couprie M Croia B Cros P A Crump G Dattoli A Del Dotto N Delerue S De Nicola J M Dias U Dorda R Fedele A Ferran Pousa M Ferrario F Filippi G Fiore R A Fonseca M Galimberti A Gallo A Ghaith D Giove A Giribono L A Gizzi F J Grüner A F Habib C Haefner T Heinemann B Hidding B J Holzer S M Hooker T Hosokai M Huebner A Irman F J Jafarinia D A Jaroszynski C Joshi M Kaluza M Kando O S Karger S Karsch E Khazanov D Khikhlukha A Knetsch D Kocon P Koester O S Kononenko G Korn I Kostyukov K O Kruchinin L Labate C Le Blanc C Lechner W Leemans A Lehrach X Li V Libov A Lifschitz V Litvinenko W Lu O Lundh A R Maier V Malka G G Manahan S P D Mangles B Marchetti A Martinez de la Ossa J L Martins P D Mason F Massimo F Mathieu G Maynard Z Mazzotta A Y Molodozhentsev A Mostacci A - S Mueller C D Murphy Z Najmudin P A P Nghiem F Nguyen P Niknejadi J Osterhoff D Oumbarek Espinos D N Papadopoulos B Patrizi V Petrillo M A Pocsai K Poder R Pompili L Pribyl D Pugacheva P P Rajeev S Romeo M Rossetti Conti A R Rossi R Rossmanith E Roussel A A Sahai G Sarri L Schaper P Scherkl U Schramm C B Schroeder J Scifo L Serafini Z M Sheng C Siders L O Silva T Silva C Simon U Sinha A Specka M J V Streeter E N Svystun D Symes C Szwaj G E Tauscher D Terzani N Thompson G Toci P Tomassini R Torres D Ullmann C Vaccarezza M Vannini J M Vieira F Villa C - G Wahlstrom R Walczak P A Walker K Wang C P Welsch S M Wiggins J Wolfenden G Xia M Yabashi J Zhu A Zigler Deutsches Elektronensynchrotron - Hamburg 22607 Hamburg Germany INFN Sezione di Napoli 80126 Napoli Italy INFN Laboratori Nazionali di Frascati 00044 Frascati Rome Italy Cockcroft Institute Warrington WA4 4AD UK University of Liverpool Liverpool L69 7ZE UK JIHT of RAS Moscow 125412 Russia Moscow Institute of Physics and Technology Dolgoprudny 141701 Russia Department of Physics of Complex Systems Weizmann Institute of Science Rehovot 7610001 Israel LPGP CNRS Univ. Paris-Sud Université Paris-Saclay 91405 Orsay France INFN Sezione di Milano Milan Italy Wigner Research Centre for Physics of the Hungarian Academy of Sciences H-1121 Budapest Hungary SUPA Department of Physics University of Strathclyde Glasgow G4 0NG UK LLR CNRS École Polytechnique Palaiseau and Université Paris Saclay France LULI École Polytechnique CNRS CEA UPMC 91128 Palaiseau France Karlsruhe Institute of Technology 76131 Karlsruhe Germany Université de Lille CNRS UMR 8523 - PhLAM France CNR Istituto Nazionale di Ottica 56124 Pisa Italy Forschungszentrum Jülich 52428 Jülich Germany Helmholtz-Zentrum Dresden-Rossendorf e.V. 01328 Dresden Germany CEA IRFU DACM Université Paris Saclay F-91191 Gif-sur-Yvette France Shanghai Jiao Tong University Shanghai 200240 P. R. China University of Rome Tor Vergata 00173 Rome Italy INFN Sezione di Roma Tor Vergata 00133 Rome Italy STFC Daresbury Laboratory Sci-Tech Daresbury Warrington U.K. John Adams Institute Blackett Laboratory Imperial College London UK Synchrotron SOLEIL Gif-sur-Yvette 91192 France Ferdinand-Braun-Institut Leibniz-Institut für Höchstfrequenztechnik Berlin Germany ENEA Centro Ricerche Frascati 00044 Frascati Rome Italy LAL CNRS/IN2P3 Univ. Paris Sud Orsay and Université Paris Saclay France SPIN-CNR Complesso Universitario di M.S. Angelo 80126 Napoli Italy GoLP/Instituto de Plasmas e Fusão Nuclear Instituto Superior Técnico Universidade de Lisboa Lisbon Portugal Università di Napoli 'Federico II' 80126

The Horizon 2020 project EuPRAXIA (European Plasma Research Accelerator with eXcellence In Applications) is producing a conceptual design report for a highly compact and cost-effective European facility with multi-GeV electron beams accelerated using plasmas. EuPRAXIA will be set up as a distributed Open Innovation platform with two construction sites, one with a focus on beam-driven plasma acceleration (PWFA) and another site with a focus on laser-driven plasma acceleration (LWFA). User areas at both sites will provide access to free-electron laser pilot experiments, positron generation and acceleration, compact radiation sources, and test beams for high-energy physics detector development. Support centres in four different countries will complement the pan-European implementation of this infrastructure.

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