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International Conference on ASIC

作者： Yaqing Chi Bingcai Sui Liang Fang Hailiang Zhou Haiqing Zhong He Sun National Laboratory for Parallel and Distributed Processing School of Computer National University of Defense Technology Hunan China National University of Defense Technology Changsha Hunan CN

Multi-island single electron transistor (SET) has become a promising candidate for the kernel device of the logic circuit in the near future. A novel compact analytical model for multi-island SET is proposed in terms of current. The new approach is based on the orthodox theory of single electron tunnelling and steady-state master equation. The model is accurate and fast compared with SIMON, and suitable for the ASIC design of multi-island SET circuit simulation.

关键词： Analytical models Single electron transistors

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A Semiautomatic Method to Achieve Independent and Intact Gene Ontology Slim (InitGO) and its Cytoscape Plugin Implementation

A Semiautomatic Method to Achieve Independent and Intact Gen...

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International Conference on BioMedical Engineering and Informatics (BMEI)

作者： Qijun Liu Zhenghua Wang Hanchang Sun Hao Guo Wanlin Liu Yunping Zhu National Laboratory of Parallel & Distributed Processing National University of Defence Technology Changsha China State Key Laboratory of Proteomics Beijing Proteome Research Center Beijing Institute of Radiation Medicine Beijing China

To conduct a systemic analysis of biological networks function distribution and function modules, we present a semiautomatic method to achieve independent and intact GO slim (InitGO) based on graph operations and GO hierarchy structure. Our method is packed into a user-friendly Cytoscape plugin named InitGO. The application of InitGO to yeast transcriptional factors regulatory network shows that the network has function modularity, offering evidence that our method is effective for defining function modules. InitGO plugin and source codes are available on request from the authors.

关键词： Ontologies Biological information theory Independent component analysis Fungi Data visualization Systems biology Bioinformatics Laboratories distributed processing Transfer functions

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Revealing the functional modularity of yeast transcriptional regulatory network by using a novel topological measurement

Revealing the functional modularity of yeast transcriptional...

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International Conference on Computer science and Information technology (CSIT)

作者： Qijun Liu Zhenghua Wang Mansheng Li Dong Li Yunping Zhu National Laboratory of Parallel & Distributed Processing National University of Defence Technology Changsha China State Key Laboratory of Proteomics Beijing Proteomics Research Center Beijing Institute of Radiation Medicine Beijing China

It has been reported that function implementations in biological systems, including transcriptional regulatory networks (TRN), show modular architecture. Analyzing functional modularity of biological networks can describe characteristics of function implementation and their "position" in biology systems from the systems perspective. Defining functional modules naturally, we bring up a novel measurement, cohesive degree (CD), to characterize the modularity. From this character, we know that not all of the corresponding modules of function annotations take on good modularity. Considering the ratio of the non-cohesive (zero-CD value) modules, TRN's functional modularity is also weaker than that of other biological network and integral ones. And, this is not caused by data integrity, but by the topology of itself. In fact, the modularity implementation of biological systems is mainly accomplished through the cooperation of several types of networks, not by TRN alonely.

关键词： Fungi Biochemistry Biological systems Proteins Gene expression Laboratories Electronic mail Proteomics Network topology Systems biology

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MEASURING THE INFLUENCE OF SOCIAL NETWORKS ON INFORMATION DIFFUSION ON BLOGSPHERES

MEASURING THE INFLUENCE OF SOCIAL NETWORKS ON INFORMATION DI...

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2009 International Conference on Machine Learning and Cybernetics(2009机器学习与控制论国际会议)

作者： TING WANG JIN-TAO TANG JI WANG School of Computer National University of Defense Technology.Changsha Hunan 410073 P.R.China National Laboratory for Parallel and Distributed Processing ChangSha Hunan 410073 China

As a typical social media in web2.0 era, blogs have become more and more important to information diffusion. Different from the traditional news, the information spread on blogs is primarily driven by users and their relations. According to this phenomenon, this paper addresses the novel problem of measuring the influence of social structures on information diffusion. This paper extracts the hidden communities and information diffusion networks on blogs, and proposes a novel quantitative measurement to investigate the influence of social networks structure on diffusion networks. The proposed methods measure the influence by utilizing a simple but effective graph similarity measuring method. The experiments demonstrate the effectiveness of the proposed algorithms and measurements, and discover the correlation between social networks and the diffusion of the "interest" topics, which indicates the necessity of using social structures for information detection and tracking on blogs.

关键词： Blogs information diffusion social networks graph similarity correlation measurement

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PyMW - A Python module for desktop grid and volunteer computing

PyMW - A Python module for desktop grid and volunteer comput...

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International Symposium on parallel and distributed processing (IPDPS)

作者： Eric M. Heien Yusuke Takata Kenichi Hagihara Adam Kornafeld Graduate School of Information Science and Technology Osaka University Toyonaka Osaka Japan Laboratory of Parallel and Distributed Systems Computer and Automation Research Institute Hungarian Academy of Sciences (ATOMKI) Budapest Hungary

We describe a general purpose master-worker parallel computation Python module called PyMW. PyMW is intended to support rapid development, testing and deployment of large scale master-worker style computations on a desktop grid or volunteer computing environment. This module targets non-expert computer users by hiding complicated task submission and result retrieval procedures behind a simple interface. PyMW also provides a unified interface to multiple computing environments with easy extension to support additional environments. In this paper, we describe the internal structure and external interface to the PyMW module and its support for the Condor computing environment and the Berkeley Open Infrastructure for Network Computing (BOINC) platform. We demonstrate the effectiveness and scalability of PyMW by performing master-worker style computations on a desktop grid using Condor and a BOINC volunteer computing project.

关键词： Grid computing Concurrent computing Computer interfaces Large-scale systems Virtual colonoscopy distributed computing Computer networks Software packages Packaging Information science

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Scheduling algorithm for long duration transaction based on cost of compensation

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Ruan Jian Xue Bao/Journal of Software 2009年第3期20卷 744-753页

作者： Zhu, Rui Guo, Chang-Guo Wang, Huai-Min School of Computer National University of Defense Technology Changsha 410073 China National Laboratory for Parallel and Distributed Processing National University of Defense Technology Changsha 410073 China

Transaction of service composition has long-lived feature which a global-transaction is divided into several distributed sub-transactions. Atomicity property is preserved by using compensating transactions, which semantically undo the effects of the completed sub-transactions, in case of global-transaction abort. However, the cost of compensation may be expensive and methods may be complex. To overcome this limitation, a novel scheduling algorithm named STCD (SubTransaction committing delay) is presented based on analysis of compensation. Different from traditional methods, sub-transactions determine the time of committing according to both the cost of compensation and the state of execution dynamically. The correctness of proposed algorithm is proved. Simulations show that STCD algorithm can confine the compensation sphere and reduce the cost of compensation. © by Institute of Software, the Chinese Academy of sciences. All rights reserved.

关键词： Costs

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Scalable unbiased sampling method based on multi-peer adaptive random walk

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Ruan Jian Xue Bao/Journal of Software 2009年第3期20卷 630-643页

作者： Fu, Yong-Quan Wang, Yi-Jie Zhou, Jing National Key Laboratory for Parallel and Distributed Processing School of Computer National University of Defense Technology Changsha 410073 China Staff Room of Computer Command Academy of the Corps of Engineers Xuzhou 221000 China

To deal with the scalable and fast unbiased sampling problems in unstructured P2P systems, a sampling method based on multi-peer adaptive random walk (SMARW) is proposed. In the method, based on the multi-peer random walk process, a set of provisional peers are selected as agents which start the sampling processes, by which the sampling process is speeded up with receiving a set of tunable number samples each time;Meanwhile, after receiving new samples earlier agents are replaced with these new samples which repeat the sampling process. With this simple replacement, it can be guaranteed with high probability that the system can reach the optimal load balance;furthermore, SMARW adopts an adaptive distributed random walk adjustment process to increase the convergence rate of the sampling process. A detailed theorical analysis and performance evaluation confirm that SMARW has a high level of unbiased sampling and near-optimal load balancing capability. © by Institute of Software, the Chinese Academy of sciences. All rights reserved.

关键词： Peer to peer networks

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Applying active measurement in the rate adaptation for 802.11 wireless networks 4

Applying active measurement in the rate adaptation for 802.1...

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4th Annual International Conference on Wireless Internet, WICON 2008

作者： Lv, Shaohe Wang, Xiaodong Zhou, Xingming National Laboratory of Parallel and Distributed Processing National University of Defense Technology ChangSha Hunan410073 China

Rate Adaptation (RA) is a mechanism to choose transmission rate based on the dynamic channel quality in wireless networks. The adaptation algorithm run solely at the sender side in 802.11 networks is studied. The key insight is the inference discrepancy in inferring the relative order of the expected performance of candidate rate, which argues that one can not always reach the correct order based on the channel state information collected exclusively by the sender itself. The consequence is wrong rate decision and significant performance loss. Therefore, a new RA structure is proposed to mitigate such effect by a novel component, rate testing. By embracing the active measurement, a lightweight and effective testing mechanism SFB, short frame burst, is proposed to detect and filter out the unsuitable transmission rate. Finally, an active measurement-based rate adaptation mechanism (AMRA) is designed and implemented. The experiments show that AMRA outperforms many other well-known RA solutions in most scenarios. Copyright © 2008 ICST.

关键词： Channel state information

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Automating software FMEA via formal analysis of dependence relations

Automating software FMEA via formal analysis of dependence r...

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32nd Annual IEEE International Computer Software and Applications Conference, COMPSAC 2008

作者： Dong, Wei Wang, Ji Zhao, Changzhi Zhang, Xian Tian, Jie School of Computer National University of Defense Technology China National Laboratory for Parallel and Distributed Processing China

ISBN: (纸本)9780769532622

The paper presents the ongoing work of studying FMEA method for embedded safety critical software via formal analysis of various dependence relations among software elements, which can fairly improve the automation and precision of both system level and detailed level FMEA. These dependence relations are depicted by the formal models abstracted from software design and implementation, and the FMEA processes for both structural and object-oriented software are proposed respectively. The initial result of case study shows the effectiveness of the approach. I 2008 IEEE.

关键词： Safety engineering

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An example-based decoder for spoken language machine translation 6

An example-based decoder for spoken language machine transla...

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6th SIGHAN Workshop on Chinese Language processing, SIGHAN 2008

作者： Li, Zhou-Jun Chao, Wen-Han Chen, Yue-Xin National Laboratory for Parallel and Distributed Processing Changsha China School of Computer Science and Engineering Beihang University China

In this paper, we propose an example-based decoder for a statistical machine translation (SMT) system, which is used for spoken language machine translation. In this way, it will help to solve the re-ordering problem and other problems for spoken language MT, such as lots of omissions, idioms etc. Through experiments, we show that this approach obtains improvements over the baseline on a Chinese-English spoken language translation task. © IJCNLP 2008. All rights reserved.

关键词： Machine translation

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