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IEEE International Symposium on Information (IT) in Medicine and Education, ITME

作者： Qinglin Wang Jie Liu Peizhen Xie Chunye Gong Yuan Li Zuocheng Xing School of Computer Science National University of Defense Technology Changsha China Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha China

Monte Carlo (MC) simulation plays an important part in dose calculation for radiotherapy treatment planning. Since the accuracy of MC simulation relies on the number of simulated particles histories, it's very time-consuming. The Intel Many Integrated Core (MIC) architecture, which consists of more than 50 cores and supports many parallel programming models, provides an efficient alternative for accelerating MC dose calculation. This paper implements the OpenMP-based MC Dose Planning Method (DPM) for radiotherapy treatment problems on the Intel MIC architecture. The implementation has been verified on the target MIC coprocessor including 57 cores. The results demonstrate that the OpenMP-based DPM implementation exhibits very accurate results and achieves the maximum speedup of 10.53 times in comparison to the original DPM one on a Xeon E5-2670 CPU. Additionally, speedup and efficiency of the implementation running on the different number of cores in MIC are also reported.

关键词： Microwave integrated circuits Instruction sets Computer architecture Photonics Computational modeling History Interpolation

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Implementation of an Accurate and Efficient Compensated DGEMM for 64-bit ARMv8 Multi-Core Processors

Implementation of an Accurate and Efficient Compensated DGEM...

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International Conference on parallel and distributed Systems (ICPADS)

作者： Hao Jiang Feng Wang Kuan Li Canqun Yang Kejia Zhao Chun Huang College of Computer Science National University of Defense Technology Changsha China Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha China

ISBN: (纸本)9781467386692

This paper presents an implementation of an accurate and efficient compensated Double-precision General Matrix Multiplication (DGEMM) based on OpenBLAS for 64-bit ARMv8 multi-core processors. Due to cancellation phenomena in floating point arithmetic, the results of DGEMM may not be as accurate as expected. In order to increase the accuracy of DGEMM, we compensate the error introduced by its dot product kernel (GEBP) by applying an error-free transformation to rewrite the kernel in assembly language. We optimize the computations in the inner kernel through exploiting loop unrolling, instruction scheduling and software-implemented register rotation to exploit instruction level parallelism (ILP). We also conduct a priori error analysis of the derived CompDGEMM. Our compensated DGEMM is as accurate as the existing quadruple precision GEMM using MBLAS, but is up to 6.4x faster. Our parallel implementation achieves good performance and scalability under varying thread counts across a range of matrix sizes evaluated.

关键词： Multicore processing Kernel Registers Libraries Error analysis Algorithm design and analysis

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A low-latency fine-grained dynamic shared cache management scheme for chip multi-processor

A low-latency fine-grained dynamic shared cache management s...

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IEEE International Conference on Performance, Computing and Communications (IPCCC)

作者： Jinbo Xu Weixia Xu Zhengbin Pang College of Computer National University of Defense Technology Changsha China Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha China

In order to utilize the shared last-level cache (LLC) in chip multi-processors (CMP) more efficiently, the partitioning of LLC resources among all cores should have the characteristics of low-latency for access, fine granularity for migration and simple hardware complexity for implementation. This paper proposes a dynamic LLC management scheme to achieve these goals. The proposed scheme migrates cache resources among different cores at the granularity of cache blocks, instead of ways. The quantity of victim cache blocks that each victim core can migrate to other target cores are related to an eviction probability, which are calculated according to the performance goal. Then the victim cache blocks for a target core is chosen from the nearest victim core who has non-zero eviction probability by introducing innovate E-Table structure in CMP. The eviction probabilities are updated periodically. With the help of E-Tables, the proposal achieves low-latency accesses by always keeping the required cache blocks near to the target cores. And fine granularity is guaranteed by maintaining an eviction probability for each core. In addition, only little additional hardware changes to traditional cache structure is required. Simulation results suggest significant performance improvements from 6.8% to 22.7% over related works.

关键词： Hardware Resource management Probability distribution Proposals Complexity theory Simulation

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Poster: Segmentation Based Online Performance Problem Diagnosis

Poster: Segmentation Based Online Performance Problem Diagno...

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International Conference on Software Engineering (ICSE)

作者： Jingwen Zhou Zhenbang Chen Ji Wang College of Computer National University of Defense Technology Changsha China Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha China

ISBN: (纸本)9781479919352

Currently, the performance problems of software systems gets more and more attentions. Among various diagnosis methods based on system traces, principal component analysis (PCA) based methods are widely used due to the high accuracy of the diagnosis results and requiring no specific domain knowledge. However, according to our experiments, we have validated several shortcomings existed in PCA-based methods, including requiring traces with a same call sequence, inefficiency when the traces are long, and missing performance problems. To cope with these issues, we introduce a segmentation based online diagnosis method in this poster.

关键词： Principal component analysis Software systems Accuracy Measurement Monitoring Computer architecture Conferences

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Classification of Tiangong-1 hyperspectral remote sensing image via contextual sparse coding

Classification of Tiangong-1 hyperspectral remote sensing im...

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International Conference on Machine Learning and Cybernetics (ICMLC)

作者： Qi Lv Yong Dou Xin Niu Jiaqing Xu Jinbo Xu School of Computer National University of Defense Technology Changsha China Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha China

ISBN: (纸本)9781467372220

The hyperspectral remote sensing is one of the frontier techniques in the remote sensing research fields. Applying the sparse coding model to the hyperspectral remote sensing image processing is a hot topic in hyperspectral information processing. To improve the accuracy of hyperspectral image classification, we propose a classification method based on the spatial-spectral join-t contextual sparse coding. Firstly, a dictionary is obtained by training using samples selected from the ground-truth reference data. Then, the sparse coefficients of each pixel are calculated based on the learned dictionary. Afterward, the sparse coefficients are input to the classifier and the final classification result is obtained. The visible and near-infrared hyperspectral remote sensing image collected by Tiangong-1 in Chaoyang District of Beijing is used to evaluate the performance of the proposed approach. Experimental results show that the proposed method yields the best classification performance with the overall accuracy of 95.74% and the Kappa coefficient of 0.9476 in comparison with other classification methods.

关键词： Hyperspectral image Remote sensing Sparse coding Sparse coding Classification Methods remote sensing hyperspectral remote sensing hyperspectral imagery Image classification

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MPISE: Symbolic Execution of MPI Programs

MPISE: Symbolic Execution of MPI Programs

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IEEE International Symposim on High Assurance Systems Engineering

作者： Xianjin Fu Zhenbang Chen Yufeng Zhang Chun Huang Wei Dong Ji Wang College of Computer National University of Defense Technology Changsha China Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha China

ISBN: (纸本)9781479981120

Message Passing Interfaces (MPI) plays an important role in parallel computing. Many parallel applications are implemented as MPI programs. The existing methods of bug detection for MPI programs have the shortage of providing both input and non-determinism coverage, leading to missed bugs. In this paper, we employ symbolic execution to ensure the input coverage, and propose an on-the-fly schedule algorithm to reduce the interleaving explorations for non-determinism coverage, while ensuring the soundness and completeness. We have implemented our approach as a tool, called MPISE, which can automatically detect the deadlock and runtime bugs in MPI programs. The results of the experiments on benchmark programs and real world MPI programs indicate that MPISE finds bugs effectively and efficiently. In addition, our tool also provides diagnostic information and replay mechanism to help understand bugs.

关键词： Computer bugs System recovery Switches Synchronization Runtime Testing Scheduling

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A GPU-based Fast Solution for Riesz Space Fractional Reaction-Diffusion Equation

A GPU-based Fast Solution for Riesz Space Fractional Reactio...

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International Conference on Network-Based Information Systems (NBIS)

作者： Qinglin Wang Jie Liu Chunye Gong Yang Zhang Zuocheng Xing Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha China College of Aerospace Science and Engineering National University of Defense Technology Changsha China Science and Technology on Space Physics Laboratory Beijing China

The fast numerical solutions of Riesz fractional equation have computational cost of O(NMlogM), where M, N are the number of grid points and time steps. In this paper, we present a GPU-based fast solution for Riesz space fractional equation. The GPU-based fast solution, which is based on the fast method using FFT and implemented with CUDA programming model, consists of parallel FFT, vector-vector addition and vector-vector multiplication on GPU. The experimental results show that the GPU-based fast solution compares well with the exact solution. Compared to the known parallel fast solution on 8-core Intel E5-2670 CPU, the overall performance speedup on NVIDIA GTX650 GPU reaches 2.12 times and that on NVIDIA K20C GPU achieves 10.93 times.

关键词： Graphics processing units Instruction sets Mathematical model Arrays Yttrium Approximation methods parallel processing

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UniMESH: The light-weight unidirectional channel Network-on-Chip in 2D mesh topology

UniMESH: The light-weight unidirectional channel Network-on-...

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International Conference on Electronics, Communications and Computers (CONIELECOMP)

作者： Feng Wang Xiantuo Tang Zuocheng Xing Hengzhu Liu Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha Hunan China Institute of Microelectronics National University of Defense Technology Changsha Hunan China

ISBN: (纸本)9781479974375

Power consumption, design complexity and areacost are limiting constraints in the design of interconnect for scalable many-core systems. To tackle the power and area concerns, we propose a light-weight unidirectional channel network-on-chip in 2D mesh topology (UniMESH), which simplifies router architectures, uses only half amount of channel links to guarantee a fully connected topology, and adopts a novel routing algorithm and deadlock recovery mechanism. As a result, it can reduce both design complexity and area-cost, and decrease some unwanted power consumption. Evaluations show that the proposed light-weight UniMESH can reduce 57.4% router areas, and save 39.3% total power consumption and only add few extra latency when compared with conventional 2D mesh design in SPLASH application simulations.

关键词： Routing System recovery Ports (Computers) Topology Latches Network topology Nickel

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A Novel Run-time Load Balancing Method for MapReduce

A Novel Run-time Load Balancing Method for MapReduce

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International Conference on Computer science and Network technology

作者： Zhihong Liu Yaping Liu Baosheng Wang Zhenghu Gong College of Computer National University of Defense Technology Changsha Hunan China Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha Hunan China

ISBN: (纸本)9781467381741

In recent years, many companies are embracing the Hadoop MapReduce system for large-data processing with completion time constrains. However, exiting Hadoop schedulers still suffer from the reducer load imbalancing problem. In this paper, we present a novel run-time load balancing method for MapReduce. Our approach predicts the workload of each reduce task at run-time, and assigns the reduce tasks to specified machines based on the estimated workload of reduce tasks dynamically. Therefore, our approach can achieve load balance among machines. The experimental results show that our approach achieves high accuracy while predicting the workload of reduce tasks, and improves the job completion time by up to 23.15%.

关键词： MapReduce load balancing task scheduling Load balancing TASK SCHEDULING Completion time Runtime Workload Religious Missions

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MilkyWay-2 supercomputer： system and application

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Frontiers of Computer science 2014年第3期8卷 345-356页

作者： Xiangke LIAO Liquan XIAO Canqun YANG Yutong LU Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha 410073 China College of Computer National University of Defense Technology Changsha 410073 China

On June 17, 2013, MilkyWay-2 （Tianhe-2） supercomputer was crowned as the fastest supercomputer in the world on the 41th TOP500 list. This paper provides an overview of the MilkyWay-2 project and describes the design of hardware and software systems. The key architecture features of MilkyWay-2 are highlighted, including neo-heterogeneous compute nodes integrating commodity- off-the-shelf processors and accelerators that share similar instruction set architecture, powerful networks that employ proprietary interconnection chips to support the massively parallel message-passing communications, proprietary 16- core processor designed for scientific computing, efficient software stacks that provide high performance file system, emerging programming model for heterogeneous systems, and intelligent system administration. We perform extensive evaluation with wide-ranging applications from LINPACK and Graph500 benchmarks to massively parallel software deployed in the system.

关键词： MilkyWay-2 supercomputer petaflops computing neo-heterogeneous architecture interconnect network heterogeneous programing model system management benchmark optimization performance evaluation

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