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24th International Conference on Algorithms and Architectures for parallel processing, ICA3PP 2024

作者： Lei, Tong Chen, Zongjing Che, Yonggang Xu, Chuanfu Laboratory of Digitizing Software for Frontier Equipment National University of Defense Technology Changsha410073 China National Key Laboratory of Parallel and Distributed Computing College of Computer Science and Technology National University of Defense Technology Changsha410073 China

ISBN: (纸本)9789819615445

Currently, the landscape of computer hardware architecture presents the characteristics of heterogeneity and diversity, prompting widespread attention to cross-platform portable parallel programming techniques. Most existing portable programming approaches adopt the "MPI+X" strategy, focusing mainly on node-level "X" parallelism, while inter-node parallelization still relies on manual MPI programming. OP2 is a domain-specific language-based portable parallel programming framework for unstructured mesh applications that supports the automatic generation of MPI parallel code. However, programmers must manually write pre-processing code during code refactoring, such as handling the mapping relationship between global and process-local variables and the initial distribution of process-local data. In this paper, we propose MARO (MPI Automatic Refactoring for OP2), an automatic refactoring method for generating pre-processing code targeting MPI code generation within the OP2 programming framework for unstructured mesh applications. This method automatically generates the pre-processing code required for MPI parallelism through the source-to-source translator, enabling OP2 to generate MPI parallel code without requiring users to write MPI-related code manually. We compare the automatically refactored OP2 applications using the proposed method with those manually refactored to validate its effectiveness. The proposed method enhances OP2’s automatic parallel code generation capability, enabling it to achieve fully automatic MPI parallelization. © The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd. 2025.

关键词： Automatic programming

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A neuro-genetic approach for inferring gene regulatory networks from gene expression data 22

A neuro-genetic approach for inferring gene regulatory netwo...

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Proceedings of the 9th International Conference on Bioinformatics Research and Applications

作者： Guo Mao Zhengbin Pang Jie Liu Ke Zuo Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology China

ISBN: (纸本)9781450396868

Accurate prediction of gene regulation rules is important for understanding complex life processes. Existing computational algorithms designed for bulk transcriptome datasets typically require a large number of time points to infer gene regulatory networks (GRNs), are suitable for a small number of genes, and cannot efficiently detect potential regulatory relationships. We propose an approach based on a deep learning framework to reconstruct GRNs from bulk transcriptome datasets, assuming that the expression levels of transcription factors involved in gene regulation are strong predictors of the expression of their target genes. The algorithm uses multilayer perceptrons to infer the regulatory relationship between multiple transcription factors and a gene, and uses genetic algorithms to search for the best regulatory gene combination. The results show that our approach is more accurate than other methods for reconstructing gene regulatory networks on real-world and simulated bulk transcriptome gene expression datasets.

关键词： gene regulatory networks datasets multilayer perceptrons genetic algorithms

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Graph Structure Learning via Transfer Entropy for Multivariate Time Series Anomaly Detection

Graph Structure Learning via Transfer Entropy for Multivaria...

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2025 IEEE International Conference on Acoustics, Speech, and Signal processing, ICASSP 2025

作者： Liu, Mingyu Wang, Yijie Zhou, Xiaohui Wang, Yongjun National Key Laboratory of Parallel and Distributed Computing College of Computer Science and Technology National University of Defense Technology Changsha China College of Computer Science and Technology National University of Defense Technology Changsha China

ISBN: (纸本)9798350368741

Multivariate time series anomaly detection (MTAD) poses a challenge due to temporal and feature dependencies. The critical aspects of enhancing the detection performance lie in accurately capturing the dependencies between variables within the sliding window and effectively leveraging them. Existing studies rely on domain knowledge to pre-set the window size, and overlook the strength of dependencies while calculating direction based on variable similarity. This paper proposes GSLTE, a graph structure learning method for MTAD. GSLTE employs Fast Fourier Transform to conduct iterative segmentation of the whole series, selecting the dominant Fourier frequency as the window size for each subsequence within the minimum interval. GSLTE quantifies the direction and strength of the dependencies based on variable-lag transfer entropy which is achieved through Dynamic Time Warping method to learn asymmetric links between variables. Extensive experiments show that GNN-based MTAD methods applying GSLTE can further improve anomaly detection performance while outperforming state-of-the-art competitors. © 2025 IEEE.

关键词： Anomaly detection Graph structure learning Multivariate time series Window size selection

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MeshONet: A Generalizable and Efficient Operator Learning Method for Structured Mesh Generation

arXiv

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arXiv 2025年

作者： Xiao, Jing Chen, Xinhai Peng, Jiaming Wang, Qingling Liu, Jie Laboratory of Digitizing Software for Frontier Equipment Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha410073 China

Mesh generation plays a crucial role in scientific computing. Traditional mesh generation methods, such as TFI and PDE-based methods, often struggle to achieve a balance between efficiency and mesh quality. To address this challenge, physics-informed intelligent learning methods have recently emerged, significantly improving generation efficiency while maintaining high mesh quality. However, physics-informed methods fail to generalize when applied to previously unseen geometries, as even small changes in the boundary shape necessitate burdensome retraining to adapt to new geometric variations. In this paper, we introduce MeshONet, the first generalizable intelligent learning method for structured mesh generation. The method transforms the mesh generation task into an operator learning problem with multiple input and solution functions. To effectively overcome the multivariable mapping restriction of operator learning methods, we propose a dual-branch, shared-trunk architecture to approximate the mapping between function spaces based on input-output pairs. Experimental results show that MeshONet achieves a speedup of up to four orders of magnitude in generation efficiency over traditional methods. It also enables generalization to different geometries without retraining, greatly enhancing the practicality of intelligent methods. Copyright © 2025, The Authors. All rights reserved.

关键词： Mesh generation

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ROGC: Role-Oriented Graph Convolution Based Multi-Agent Reinforcement Learning

ROGC: Role-Oriented Graph Convolution Based Multi-Agent Rein...

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2022 IEEE International Conference on Multimedia and Expo, ICME 2022

作者： Liu, Yuntao Li, Yuan Xu, Xinhai Liu, Donghong Dou, Yong National University of Defense Technology National Laboratory for Parallel and Distributed Processing China Academy of Military Sciences China

ISBN: (数字)9781665485630

ISBN: (纸本)9781665485630

The role-oriented learning approach could improve the performance of multi-agent reinforcement learning by decomposing complex multi-agent tasks into different roles. However, due to the dynamic environment and interactions among agents, the role undertaken by an agent changes rapidly with time going on. Therefore, the roles of agents should be adapted to the varying situation during the learning process. In this paper, we propose a role-oriented graph convolution based multi-agent reinforcement learning framework (ROGC). Firstly, we design a role assigner based on samples generated from the environment to learn roles for classifying agents into different groups. To further enhance cooperation among agents in the same group for higher performance, we design a graph convolutional module to achieve intra-role communications based on discovered roles. With roles and extracted role features, we design a role-oriented policy learning module that embeds the role information into the algorithm and generates effective policies for individuals. Further, we introduce an auto-encoder to learn the intra-role cooperation knowledge in the graph convolutional module, which ensures our framework executes in a decentralized way. Extensive experiments show that our framework can learn dynamic roles and make full use of learned roles, which makes it outperform popular MARL methods. © 2022 IEEE.

关键词： Reinforcement learning

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A Connectivity-Enhanced Multi-Task Learning based on Anatomical Priors for 3D Class-Balanced Pulmonary Airway Segmentation

A Connectivity-Enhanced Multi-Task Learning based on Anatomi...

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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Jia, Yan Dou, Yong Qiao, Peng Cheng, Yuqing Xu, Kele He, Zhouyu National University of Defense Technology National Key Laboratory of Parallel and Distributed Computing College of Computer Science and Technology Changsha China National University of Defense Technology College of Systems Engineering Changsha China

ISBN: (纸本)9798350386226

Accurate and efficient airway segmentation is essential for evaluating pulmonary diseases, aiding diagnosis, reducing the preoperative burden of airway identification, and minimizing patient discomfort during prolonged surgeries. However, current pulmonary airway reconstruction techniques are hindered by two major challenges: difficulty in accurately reconstructing fine airway branches due to the tendency to overlook small targets, and insufficient structural connectivity leading to frequent branch discontinuities within the airway tree. These limitations directly affect the clinical applicability of reconstructed airways. To overcome these challenges, a novel 3D pulmonary airway segmentation multi-task framework is proposed, designed to enhance the performance of existing backbone models. This approach integrates Anatomical Prior-Based Multi-Task Learning (AP-MTL) through the use of Gaussian-constructed connectivity-enhanced isosurfaces, significantly improving the network's ability to maintain airway continuity. Additionally, a Class-Balanced CT Density Distribution Reconstruction mechanism (DDR-CB) is introduced, further refining the model's capability to detect and segment fine airway branches. As a result of these enhancements, the model demonstrates a 11.5% average improvement in segmentation accuracy and connectivity compared to the baseline. The source code is publicly accessible at https://***/inexhaustible419/APMTLAirwaySegment. © 2024 IEEE.

关键词： Pulmonary diseases

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Accelerating Sample-based GNN Training by Feature Caching on GPUs 7

Accelerating Sample-based GNN Training by Feature Caching on...

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7th IEEE International Conference on Smart Cloud, SmartCloud 2022

作者： He, Yuqi Lai, Zhiquan Ran, Zhejiang Zhang, Lizhi Li, Dongsheng National University of Defense Technology National Key Laboratory of Parallel and Distributed Processing College of Computer Changsha China

ISBN: (数字)9781665451796

ISBN: (纸本)9781665451796

The existing graph neural network (GNN) systems adopt sample-based training on large-scale graphs over multiple GPUs. Although they support large-scale graph training, large data loading overhead is still a bottleneck. In this work, we propose SCGraph, a method that supports GPU high-speed feature caching. We classify the graph vertices sorted by out-degrees. For high out-degree vertices, we set grading caches via different GPUs to increase the overall cache content through NVLink high-speed data transmission between them. For low out-degree vertices, we expand training vertices' neighborhood in advance to regenerate cache. We evaluate SCGraph against two state-of-the-art industrial GNN frameworks, i.e., DGL and PaGraph on two datasets Reddit and ogbn-products. Experimental results show that SCGraph achieves up to 1.83× performance speedup over the state-of-the-art baselines. © 2022 IEEE.

关键词： Graph neural networks

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Adversarial Attack and Defense for Transductive Support Vector Machine

Adversarial Attack and Defense for Transductive Support Vect...

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International Joint Conference on Neural Networks (IJCNN)

作者： Li Liu Haiyan Chen Changchun Yin Liming Fang College of Computer Science and Technology Nanjing University of Aeronautics and Astronautics China Science and Technology on Parallel and Distributed Processing Laboratory (PDL) China

ISBN: (数字)9798350359312

ISBN: (纸本)9798350359329

As a classic semi-supervised approach, the Transductive Support Vector Machine (TSVM) has exhibited remarkable accuracy by utilizing unlabeled data. However, the robustness of TSVM against adversarial attacks remains a subject of investigation, prompting concerns about its reliability in security-critical applications. To unveil the vulnerability of TSVM, we introduce a finite-attack model specifically tailored to its characteristics, effectively manipulating its outputs. Additionally, we present Adversarial Defense-based TSVM (AD-TSVM), the first dedicated defense scheme designed for TSVM. AD-TSVM incorporates adversarial information into the optimization process, enhancing robustness by rebuilding a customized loss function and decision margin to counteract attacks. Rigorous experiments conducted on benchmark datasets demonstrate the effectiveness of AD-TSVM in significantly improving both the accuracy and stability of TSVM when confronted with adversarial attacks. This pioneering research assesses the weaknesses of TSVM and, more importantly, offers valuable insights and solutions for developing secure and trustworthy TSVM systems in the face of emerging threats.

关键词： Training Support vector machines Accuracy Machine learning algorithms Neural networks Robustness Vectors

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Evaluating matrix multiplication-based convolution algorithm on multi-core digital signal processors

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Guofang Keji Daxue Xuebao/Journal of National University of Defense technology 2023年第1期45卷 86-94页

作者： Wang, Qinglin Pei, Xiangdong Liao, Linyu Wang, Haoxu Li, Rongchun Mei, Songzhu Li, Dongsheng College of Computer Science and Technology National University of Defense Technology Changsha410073 China Science and Technology on Parallel and Distributed Processing Laboratory National University of Defense Technology Changsha410073 China

The matrix multiplication-based convolutional algorithm, which can efficiently implement convolutions with different parameters, is the first choice of convolution performance optimization for a given chip. Based on the architecture of Phytium heterogeneous multi-core DSPs(digital signal processors) developed by National University of Defense technology and the characteristic of the matrix multiplication-based convolutional algorithm, a parallel implementation of the matrix multiplication-based convolutional algorithm (called ftmEConv) for different convolutions on multi-core DSPs was proposed. The ftmEConv consists of four parallelized parts(input feature maps transformation, filter transformation, matrix multiplication, and output feature maps transformation), all of which were optimized for multi-core DSPs, and the performance of each part was improved by effectively exploiting the potential of all functional units in DSP cores. The experimental results demonstrate that ftmEConv achieves computational efficiency of up to 42.90%. Compared with other implementations of the matrix multiplication-based convolutional algorithm on heterogeneous chips, ftmEConv gets a speedup of up to 7.79 times. © 2023 National University of Defense technology. All rights reserved.

关键词： Convolution

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DMSA: Decentralized and Multi-keyword Selective Data Sharing and Acquisition 22

DMSA: Decentralized and Multi-keyword Selective Data Sharing...

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22nd IEEE International Symposium on parallel and distributed processing with Applications, ISPA 2024

作者： Lin, Moheng Shi, Peichang Fu, Xiang Jiang, Feng Yi, Guodong National University of Defense Technology National Key Laboratory of Parallel and Distributed Computing College of Computer Science Changsha410073 China Xiangjiang Lab Changsha410073 China

ISBN: (纸本)9798331509712

Blockchain technology has been extensively uti-lized in decentralized data-sharing applications, with the immutability of blockchain providing a witness for the circulation of data. However, current blockchain data-sharing solutions still fail to address the simultaneous screening needs of both the sender and receiver with multi-keywords. Without the capability to support bilateral simultaneous filtering, the disclosure of reasons for matching failures could inadvertently expose sensitive user data. Therefore, the challenge lies in enabling ciphertexts with multiple keywords and receivers with multiple interests to achieve mutual and simultaneous matching. Based on the technical foundations of SE (Searchable Encryption), MABE (Multi-Attribute Based Encryption), and polynomial fitting, this paper proposes a scheme called DMSA (Decentralized and Multi-keyword selective Sharing and selective Acquisition). This scheme can satisfy soundness, enabling ciphertexts carrying multiple keywords and receivers representing multiple interests to match each other simultaneously. We conducted a security analysis that confirms the security of DMSA against chosen-plaintext attacks. Our experimental results demonstrate a significant efficiency improvement, with a 67% increase over single-keyword data-sharing schemes and a 16% enhancement compared to the existing multi-keyword data-sharing solution. © 2024 IEEE.

关键词： Ciphertext

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