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Systematic literature review: Accelerate the rice production for global food security

AIP Conference Proceedings 2023年第1期2594卷

作者： N. Dominic T. W. Cenggoro B. Pardamean Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department School of Computer Science Bina Nusantara University Jakarta Indonesia 11480 Bioinformatics & Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480

By 2050, about 70% of extra food production is needed to feed the world's population. As a majority staple food, the expansion of rice production should be accelerated. This systematic literature review aims to discover the factors that influence rice yields through a methodology that is partitioned into four main stages, i.e., query entry into multiple database sources, article title filtering, abstract filtering, and final article selection. The results show that genetics, irrigation system management, and farmers’ long-evolved local knowledge or experiences are the three big factors that elevate the rice production rates. Nevertheless, global warming is a serious challenge that should be deeply considered due to its great impact on reducing rice yields by up to 14.5%. Thus, the development of genetically modified rice varieties needs to be escalated while still maintaining other exogenous factors. This study contributes to providing a broader perspective for decision-makers and other relevant experts to accelerate rice production to achieve global food security.

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Recent insights into the pathogenesis and therapeutic targets of chronic liver diseases

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eGastroenterology 2023年第2期1卷 78-87页

作者： Yankai Wen Lichun Ma Cynthia Ju Department of Anesthesiology Critical Care and Pain MedicineUniversity of Texas McGovern Medical SchoolHoustonTexasUSA Cancer Data Science Laboratory National Cancer Institute Center for Cancer ResearchBethesdaMarylandUSA Liver Cancer Program National Cancer Institute Center for Cancer ResearchBethesdaMarylandUSA

Viral hepatitis,alcohol-associated liver disease(ALD)and non-alcoholic fatty liver disease(NAFLD)are the three major causes of chronic liver diseases,which account for approximately 2 million deaths per year *** current direct-acting antiviral drugs and vaccinations have effectively reduced and ameliorated viral hepatitis infection,but there are still no effective drug treatments for ALD,NAFLD and liver cancer due to the poor understanding of their *** better understand the pathogenesis,the fifth Chinese American Liver Society/Society of Chinese Bioscientists in America Hepatology Division Annual Symposium,which was held virtually on 21–22 October 2022,focused on the topics related to ALD,NAFLD and liver ***,we briefly highlight the presentations that focus on the current progress in basic and translational research in ALD,NAFLD and liver *** roles of non-coding RNA,autophagy,extrahepatic signalling,macrophages,etc in liver diseases are deliberated,and the application of single-cell RNA sequencing in the study of liver disease is also discussed.

关键词： chronic liver diseaseswhich chronic liver diseases viral hepatitis liver cancer non alcoholic fatty liver disease alcohol associated liver disease pathogenesis viral hepatitisalcohol associated

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ILVR: Conditioning Method for Denoising Diffusion Probabilistic Models

ILVR: Conditioning Method for Denoising Diffusion Probabilis...

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International Conference on Computer Vision (ICCV)

作者： Jooyoung Choi Sungwon Kim Yonghyun Jeong Youngjune Gwon Sungroh Yoon Data Science and AI Laboratory Seoul National University Korea AI Research Team Samsung SDS ASRI ENMC and Interdisciplinary Program in AI Seoul National University Korea

ISBN: (纸本)9781665428132

Denoising diffusion probabilistic models (DDPM) have shown remarkable performance in unconditional image generation. However, due to the stochasticity of the generative process in DDPM, it is challenging to generate images with the desired semantics. In this work, we propose Iterative Latent Variable Refinement (ILVR), a method to guide the generative process in DDPM to generate high-quality images based on a given reference image. Here, the refinement of the generative process in DDPM enables a single DDPM to sample images from various sets directed by the reference image. The proposed ILVR method generates high-quality images while controlling the generation. The controllability of our method allows adaptation of a single DDPM without any additional learning in various image generation tasks, such as generation from various downsampling factors, multi-domain image translation, paint-to-image, and editing with scribbles.

关键词： Computer vision Image synthesis Computational modeling Noise reduction Semantics Refining Probabilistic logic

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Design and Implementation of Enterprise Recruitment Mini program

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Journal of Cyber Security 2021年第3期3卷 125-132页

作者： Yu Xue Nan Wei Junyang Han Chishe Wang Moayad Aloqaily School of Computer and Software Nanjing University of Information Science and TechnologyNanjingChina Jiangsu Key Laboratory of Data Science and Smart Software Jinling Institute of TechnologyNanjingChina Faculty of Engineering Al Ain UniversityAl AinUnited Arab Emirates NUIST Students’Platform for Innovation and Entrepreneurship Training Program NanjingChina

Since the 21st century,the Internet has been updated and developed at an alarming *** the same time,WeChat applets are constantly improving and introducing new *** an enterprise recruitment system based on WeChat applets for the majority of job seekers and recruiter users,provide job seekers with easy-to-reach employment opportunities,and provide a convenient and clear screening environment for job *** front-end part of the applet is developed using WeChat developer tools,and the back-end system is developed using *** Spring Boot+Spring MVC framework,implemented in Java *** is managed using MySql *** function of this company’s recruitment applet is similar to the ordinary traditional native recruitment *** achieves basic functions such as job search,job search,collection of jobs,delivery of resumes,viewing of the job search process,recruitment of job information,screening of job resumes,notification of interviews,etc.

关键词： Mini-program recruitment WeChat developer tools MyEclipse

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Analysis and Design of University Teaching Equipment Management Information System

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Journal of Cyber Security 2021年第3期3卷 177-185页

作者： Yu Xue Xiang Jiao Chishe Wang Huanlun Chen Moayad Aloqaily School of Computer and Software Nanjing University of Information Science and TechnologyNanjingChina Jiangsu Key Laboratory of Data Science and Smart Software Jinling Institute of TechnologyNanjingChina Faculty of Engineering Al Ain UniversityAl AinUnited Arab Emirates NUIST Students’Platform for Innovation and Entrepreneurship Training Program NanjingChina

Teaching equipment management is an important factor for colleges and universities to improve their teaching level,and its management level directly affects the service life and efficiency of teaching *** in recent years,our university recruitment of students scale is increasing year by year,the size of the corresponding teaching equipment is also growing,therefore to develop a teaching equipment management information system is necessary,not only can help universities to effective use of the existing teaching resources,also can update scrap equipment,related equipment maintenance,and build a good learning environment to students and to the improvement of the teaching quality of colleges and universities play a reliable safeguard *** paper first introduces some common development tools,and then analyzes the user functional requirements and data requirements of the system,and analyzes the feasibility of the system development from many aspects,finally based on B/S mode,using Java language,JSP technology and MySQL database design and implementation of a teaching equipment management information *** main functional modules of the system include equipment basic information management,equipment loan and return information management,equipment maintenance information management,equipment scrap information management,the interface of each functional module is shown in the paper.

关键词： Information systems teaching equipment management system analysis

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Higher-order rich-club phenomenon in collaborative research grant networks

arXiv

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arXiv 2022年

作者： Nakajima, Kazuki Shudo, Kazuyuki Masuda, Naoki Department of Mathematical and Computing Science Tokyo Institute of Technology Meguro-ku Tokyo152-8552 Japan Department of Mathematics State University of New York at Buffalo Buffalo14260 United States Academic Center for Computing and Media Studies Kyoto University Sakyo-ku Kyoto606-8501 Japan Computational and Data-Enabled Science and Engineering Program State University of New York at Buffalo Buffalo14260 United States Faculty of Science and Engineering Waseda University Tokyo169-8555 Japan

Modern scientific work, including writing papers and submitting research grant proposals, increasingly involves researchers from different institutions. In grant collaborations, it is known that institutions involved in many collaborations tend to densely collaborate with each other, forming rich clubs. Here we investigate higher-order rich-club phenomena in networks of collaborative research grants among institutions and their associations with research impact. Using publicly available data from the National science Foundation in the US, we construct a bipartite network of institutions and collaborative grants, which distinguishes among the collaboration with different numbers of institutions. By extending the concept and algorithms of the rich club for dyadic networks to the case of bipartite networks, we find rich clubs both in the entire bipartite network and the bipartite subnetwork induced by the collaborative grants involving a given number of institutions up to five. We also find that the collaborative grants within rich clubs tend to be more productive in a per-dollar sense than the control. Our results highlight advantages of collaborative grants among the institutions in the rich clubs. Copyright © 2022, The Authors. All rights reserved.

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Peptide-Coated Bacteriorhodopsin-Based Photoelectric Biosensor for Detecting Rheumatoid Arthritis

Biosensors

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Biosensors 2023年第10期13卷 929-929页

作者： Chen, Hsiu-Mei Tsai, Yi-Hsuan Hsu, Chien-Yi Wang, Yong-Yi Hsieh, Cheng-En Chen, Jin-Hua Chang, Yu-Sheng Lin, Ching-Yu Department of Chemical Engineering National Taiwan University of Science and Technology Taipei10607 Taiwan Department of Family Medicine Wan Fang Hospital Taipei Medical University Taipei11696 Taiwan Division of Cardiology and Cardiovascular Research Center Department of Internal Medicine Taipei Medical University Hospital Taipei11031 Taiwan Division of Cardiology Department of Internal Medicine School of Medicine College of Medicine Taipei Medical University Taipei11031 Taiwan Taipei Heart Institute Taipei Medical University Taipei11031 Taiwan Graduate Institute of Data Science College of Management Taipei Medical University Taipei11031 Taiwan Office of Data Science Taipei Medical University Taipei11031 Taiwan Division of Allergy Immunology and Rheumatology Department of Internal Medicine Shuang Ho Hospital Taipei Medical University New Taipei City23561 Taiwan Division of Allergy Immunology and Rheumatology Department of Internal Medicine School of Medicine College of Medicine Taipei Medical University Taipei11031 Taiwan School of Medical Laboratory Science and Biotechnology College of Medical Science and Technology Taipei Medical University Taipei11031 Taiwan Ph.D. Program in Medical Biotechnology College of Medical Science and Technology Taipei Medical University Taipei11031 Taiwan

An effective early diagnosis is important for rheumatoid arthritis (RA) management. This study reveals a novel RA detection method using bacteriorhodopsin as a photoelectric transducer, a light-driven proton pump in purple membranes (PMs). It was devised by covalently conjugating a PM monolayer-coated electrode with a citrullinated-inter-alpha-trypsin inhibitor heavy chain 3 (ITIH3)542–556 peptide that recognizes the serum RA-associated autoantibodies. The direct serum coating decreased the photocurrents in the biosensor, with the reduction in the photocurrent caused by coating with an RA-patient serum that is significantly larger than that with a healthy-control serum (38.1% vs. 20.2%). The difference in the reduction in the photocurrent between those two serum groups widened after the serum-coated biosensor was further labeled with gold nanoparticle (AuNP)-conjugated anti-IgA (anti-IgA-AuNP) (53.6% vs. 30.6%). Both atomic force microscopic (AFM) and Raman analyses confirmed the sequential peptide, serum, and anti-IgA-AuNP coatings on the PM-coated substrates. The reductions in the photocurrent measured in both the serum and anti-IgA-AuNPs coating steps correlated well with the results using commercial enzyme-linked immunosorbent assay kits (Spearman rho = 0.805 and 0.787, respectively), with both a sensitivity and specificity close to 100% in both steps. It was shown that an RA diagnosis can be performed in either a single- or two-step mode using the developed biosensor. © 2023 by the authors.

关键词： Peptides

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Narrowing of the Racial Disparities Gap in Survival of Patients With Mycosis Fungoides: A Longitudinal Analysis of the SEER database

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Clinical Lymphoma, Myeloma and Leukemia 2025年第7期25卷 e501-e506页

作者： Le, Britney Soror, Noha Ismail, Hamid D. Baker, Mohammed Shetayyah, Salman Abu Chung, Catherine G. William, Basem M. Ohio University Heritage College of Osteopathic Medicine Dublin OH The University of Oklahoma College of Medicine Oklahoma City OK United States Department of Computational Data Science and Engineering North Carolina Agricultural and Technical State University Greensboro NC United States Faculty of Medicine Jordan University of Science and Technology Irbid Jordan The Ohio State University Comprehensive Cancer Center: Arthur G. James Cancer Hospital and Richard J. Solove Research Institute Division of Dermatology Columbus OH Ohio Health Blood and Marrow Transplant Program Columbus OH

Background: Mycosis fungoides (MF) is the commonest subtype of cutaneous T-cell lymphoma. In the United States, prior studies reported that African Americans (AA) with MF had poor outcomes. data characterizing differences in racial disparity outcomes over time are limited. Patients and Methods: We collected data from the United States Surveillance, Epidemiology, and End Results (SEER) database to investigate the survival patterns of patients with MF from 1988 to 2011. Cases were divided into 3 cohorts based on the year of diagnosis. Univariable and multivariable analysis were conducted to assess for factors associated with overall survival (OS). Results: 2896 cases of MF were detected, with a median follow-up duration of 60 months. The disparity in survival between the years 1988-1995 and 2004-2011 was significant (P = .05). The parameter estimates of the Cox proportional hazards model for the 1988-1995 period (using the 2004-2011 period as a reference) was also significant (P = .024). Patients diagnosed between 1988 and 1995 were 1.4 times more likely to die from the disease than those diagnosed between 2004 and 2011. The survival gap between AA and white patients narrowed in 1996-2003 and 2004-2011 in comparison to 1988-1995. This indicates improvements in the survival of AA patients over time. Conversely, the survival rates of white patients remained relatively stable over time. Conclusions: Our study demonstrates that AA with MF have reduced survival. Despite the persistent pattern of lower survival across all periods, the gap in survival between white and AA seems to be narrowing over time. © 2025 Elsevier Inc.

关键词： Cutaneous lymphoma Mycosis fungoides Outcome research Racial disparity SEER database

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Estimation of the main air pollutants from different biomasses under combustion atmospheres by artificial neural networks

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Chemosphere 2024年 352卷 141484页

作者： Monteiro, Thalyssa Oliveira Alves, Pedro Augusto Araújo da Silva de Almeida Nava Barradas Filho, Alex Oliveira Villa-Vélez, Harvey Alexander Cruz, Glauber Postgraduate Program in Mechanical Engineering (PPGMEC) Department of Mechanics and Materials Federal Institute of Education Science and Technology of Maranhão (IFMA) Maranhão São Luís Brazil Postgraduate Program in Computer Science and Computational Mathematics (PPG-CCMC) Department of Computer Science University of São Paulo (USP) São Carlos São Paulo Brazil Data Analysis and Artificial Intelligence Laboratory (DARTi) Department of Computational Engineering Federal University of Maranhão (UFMA) Maranhão São Luís Brazil Department of Chemical Engineering Federal University of Maranhão (UFMA) Maranhão São Luís Brazil Processes and Thermal Systems Laboratory (LPSisTer) Department of Mechanical Engineering Federal University of Maranhão (UFMA) Maranhão São Luís Brazil

The production of biofuels to be used as bioenergy under combustion processes generates some gaseous emissions (CO, CO2, NOx, SOx, and other pollutants), affecting living organisms and requiring careful assessments. H... 详细信息

The production of biofuels to be used as bioenergy under combustion processes generates some gaseous emissions (CO, CO₂, NO_x, SO_x, and other pollutants), affecting living organisms and requiring careful assessments. However, obtaining such information experimentally for data evaluation is costly and time-consuming and its in situ obtaining for regional biomasses (e.g., those from Northeast Brazil (NEB) is still a major challenge. This paper reports on the application of artificial neural networks (ANNs) for the prediction of the main air pollutants (CO, CO₂, NO, and SO₂) produced during the direct biomass combustion (N₂/O₂:80/20%) with the use of ultimate analysis (carbon, hydrogen, nitrogen, sulfur, and oxygen). 116 worldwide biomasses were used as input data, which is a relevant alternative to overcome the lack of experimental resources in NEB and obtain such information. Cross-validation was conducted with k-fold to optimize the ANNs and performance was analyzed with the use of statistical errors for accuracy assessments. The results showed an acceptable statistical performance for all architectures of ANNs, with 0.001–12.41% MAPE, 0.001–5.82 mg Nm⁻³ MAE, and 0.03–52.30 mg Nm⁻³ RMSE, highlighting the high precision of the emissions studied. On average, the differences between predicted and real values for CO, CO₂, NO, and SO₂ emissions from NEB biomasses were approximately 0.01%, 10⁻⁶%, 0.14%, and 0.05%, respectively. Pearson coefficient provided consistent results of concentration of the ultimate analysis in relation to the emissions studied and effectiveness of the test set in the developed models. © 2024 Elsevier Ltd

关键词： Brazilian northeastern Environmental statistics Evaluation metrics Gaseous emissions Predictive models Thermoconversion

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A Foundational Multimodal Vision Language AI Assistant for Human Pathology

arXiv

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arXiv 2023年

作者： Lu, Ming Y. Chen, Bowen Williamson, Drew F.K. Chen, Richard J. Ikamura, Kenji Gerber, Georg Liang, Ivy Phi Le, Long Ding, Tong Parwani, Anil V. Mahmood, Faisal Department of Pathology Brigham and Women's Hospital Harvard Medical School BostonMA United States Department of Pathology Massachusetts General Hospital Harvard Medical School BostonMA United States Cancer Program Broad Institute of Harvard and MIT CambridgeMA United States Cancer Data Science Program Dana-Farber Cancer Institute BostonMA United States Department of Biomedical Informatics Harvard Medical School BostonMA United States CambridgeMA United States Harvard John A. Paulson School of Engineering And Applied Sciences Harvard University CambridgeMA United States Department of Pathology Wexner Medical Center Ohio State University ColumbusOH United States Harvard Data Science Initiative Harvard University CambridgeMA United States

The field of computational pathology has witnessed remarkable progress in the development of both taskspecific predictive models and task-agnostic self-supervised vision encoders. However, despite the explosive growth of generative artificial intelligence (AI), there has been limited study on building general purpose, multimodal AI assistants tailored to pathology. Here we present PathChat, a vision-language generalist AI assistant for human pathology using an in-house developed foundational vision encoder pretrained on 100 million histology images from over 100,000 patient cases and 1.18 million pathology image-caption pairs. The vision encoder is then combined with a pretrained large language model and the whole system is finetuned on over 250,000 diverse disease agnostic visual language instructions. We compare PathChat against several multimodal vision language AI assistants as well as GPT4V, which powers the commercially available multimodal general purpose AI assistant ChatGPT-4. When relevant clinical context is provided with the histology image, PathChat achieved a diagnostic accuracy of 87% on multiple-choice questions based on publicly available cases of diverse tissue origins and disease models. Additionally, using open-ended questions and human expert evaluation, we found that overall PathChat produced more accurate and pathologist-preferable responses to diverse queries related to pathology. As an interactive and general vision language AI assistant that can flexibly handle both visual and natural language inputs, PathChat can potentially find impactful applications in pathology education, research, and human-in-the-loop clinical decision making. © 2023, CC BY-NC-ND.

关键词： Pathology

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