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IEEE Conference on High Performance Extreme computing (HPEC)

作者： Zhibin Wang Ziheng Meng Xue Li Xi Lin Long Zheng Chen Tian Sheng Zhong State Key Laboratory for Novel Software Technology Nanjing University Alibaba Group“ National Engineering Research Center for Big Data Technology and System/ Services Computing Technology and System Lab/Cluster and Grid Computing Laboratory Huazhong University of Science and Technology Zhejiang Lab

Subgraph matching is a crucial problem in graph theory with diverse applications in fields, such as bioinformatics, social networks and recommendation systems. Accelerating subgraph matching can be greatly facilitated by GPUs, which offer exceptional parallelism and high memory bandwidth. By leveraging the power of multiple GPU cards, subgraph matching can be scaled to achieve unprecedented levels of performance. In this paper, we propose SMOG, an abbreviation for. Subgraph Matching On Multi-Card GPUs. It is a general, high-performance and scalable sub graph matching system that utilizes multi-card GPUs. To address the issue of duplication resulting from subgraph automorphism, SMOG introduces a two-step approach. Firstly, it analyzes the symmetry within the subgraph. Then, it adaptively adjusts the graph preprocessing and generates subgraph-aware GPU codes tailored to the given subgraph. Furthermore, SMOG leverages multi-level parallelism by designing the specific strategy for each level, enabling it to scale from 1 to 1,024 GPU cards, resulting in an extraordinary $553\times$ speedup. We evaluate SMOG on various subgraph queries and datasets. The experimental results demonstrate that SMOG outperforms the triangle-specific system TRUST with an average speedup of $2.94\times$ . And it performs significantly better than the subgraph matching system RPS by $203.55\times$ and the graph processing system Gunrock by 35, $455.52\times$ on average.

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From General to Specific: Tailoring Large Language Models for Personalized Healthcare

arXiv

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arXiv 2024年

作者： Shi, Ruize Huang, Hong Zhou, Wei Yin, Kehan Zhao, Kai Zhao, Yun Huazhong University of Science and Technology Wuhan China Tongji Medical College China Hubei Maternity and Child Health Care Hospital China National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab Cluster and Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology China

The rapid development of large language models (LLMs) has transformed many industries, including healthcare. However, previous medical LLMs have largely focused on leveraging general medical knowledge to provide responses, without accounting for patient variability and lacking true personalization at the individual level. To address this, we propose a novel method called personalized medical language model (PMLM), which explores and optimizes personalized LLMs through recommendation systems and reinforcement learning (RL). Specifically, by utilizing self-informed and peer-informed personalization, PMLM captures changes in behaviors and preferences to design initial personalized prompts tailored to individual needs. We further refine these initial personalized prompts through RL, ultimately enhancing the precision of LLM guidance. Notably, the personalized prompt are hard prompt, which grants PMLM high adaptability and reusability, allowing it to directly leverage high-quality proprietary LLMs. We evaluate PMLM using real-world obstetrics and gynecology data, and the experimental results demonstrate that PMLM achieves personalized responses, and it provides more refined and individualized services, offering a potential way for personalized medical LLMs. Copyright © 2024, The Authors. All rights reserved.

关键词： Reusability

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ACGraph: Accelerating Streaming Graph Processing via Dependence Hierarchy

ACGraph: Accelerating Streaming Graph Processing via Depende...

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Design Automation Conference

作者： Zihan Jiang Fubing Mao Yapu Guo Xu Liu Haikun Liu Xiaofei Liao Hai Jin Wei Zhang National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab Cluster and Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology Wuhan China Department of Electronic and Computer Engineering HKUST Hong Kong

Streaming graph processing needs to timely evaluate continuous queries. Prior systems suffer from massive redundant computations due to the irregular order of processing vertices influenced by updates. To address this issue, we propose ACGraph, a novel streaming graph processing approach for monotonic graph algorithms. It maintains dependence trees during runtime, and makes affected vertices processed in a top-to-bottom order in the hierarchy of the dependence trees, thus normalizing the state propagation order and coalescing of multiple propagation to the same vertices. Experimental results show that ACGraph reduces the number of updates by 50% on average, and achieves the speedup of 1.75~7.43× over state-of-the-art systems.

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GraphMetaP: Efficient MetaPath Generation for Dynamic Heterogeneous Graph Models

GraphMetaP: Efficient MetaPath Generation for Dynamic Hetero...

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International Symposium on Parallel and Distributed Processing (IPDPS)

作者： Haiheng He Dan Chen Long Zheng Yu Huang Haifeng Liu Chaoqiang Liu Xiaofei Liao Hai Jin National Engineering Research Center for Big Data Technology and System/Services Computing Technology and System Lab/Clusters and Grid Computing Lab Huazhong University of Science and Technology China Zhejiang Lab Hangzhou China

Metapath-based heterogeneous graph models (MHGM) show excellent performance in learning semantic and structural information in heterogeneous graphs. Metapath matching is an essential processing step in MHGM to find all metapath instances, bringing significant overhead compared to the total model execution time. Even worse, in dynamic heterogeneous graphs, metapath instances require to be rematched while graph updated. In this paper, we observe that only a small fraction of metapath instances change and propose GraphMetaP, an efficient incremental metapath maintenance method in order to eliminate the matching overhead in dynamic heterogeneous graphs. GraphMetaP introduces a novel format for metapath instances to capture the dependencies among the metapath instances. The format incrementally maintains metapath instances based on the graph updates to avoide the rematching metapath overhead for the updated graph. Furthermore, GraphMetaP uses the fold way to simplify the format in order to recover all metapath instances faster. Experiments show that GraphMetaP enables efficient maintenance of metapath instances on dynamic heterogeneous graphs and outperforms 172.4X on average compared to the matching metapath method.

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Design Automation Conference

作者： Jin Zhao Yu Zhang Jian Cheng Yiyang Wu Chuyue Ye Hui Yu Zhiying Huang Hai Jin Xiaofei Liao Lin Gu Haikun Liu National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab Cluster and Grid Computing Lab Huazhong University of Science and Technology Wuhan China Zhejiang-HUST Joint Research Center for Graph Processing Zhejiang Lab Hangzhou China

Temporal graph processing is used to handle the snapshots of the temporal graph, which concerns changes in graph over time. Although several software/hardware solutions have been designed for efficient temporal graph processing, they still suffer from serious irregular data access due to the uncoordinated graph traversal. To overcome these limitations, this paper proposes SaGraph, a domain-specific hardware accelerator to support the efficient processing of temporal graph. Specifically, temporal graph processing shows strong data access similarity, i.e., most graph accesses of the processing of different snapshots are the same and usually refer to a small fraction of vertices. SaGraph can dynamically coordinate the graph traversals and adaptively cache the vertex states to fully exploit the data access similarity for smaller data access overhead. We implemented and evaluated SaGraph on a Xilinx Alveo U280 FPGA card. Compared with the cutting-edge software and hardware solutions, SaGraph achieves 8.5×-157.3×, 4.2×-16.1× speedups and 34.7×-423.6×, 5.3×-14.7× energy savings, respectively.

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EdgeThemis: Ensuring Model Integrity for Edge Intelligence 25

EdgeThemis: Ensuring Model Integrity for Edge Intelligence

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34th ACM Web Conference, WWW 2025

作者： Yang, Jiyu He, Qiang Zhou, Zheyu Dai, Xiaohai Chen, Feifei Tian, Cong Yang, Yun Swinburne University of Technology Melbourne Australia Huazhong University of Science and Technology Wuhan China Deakin University Melbourne Australia Xidian University Xi’an China National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab Cluster Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology Wuhan430074 China

ISBN: (纸本)9798400712746

Machine learning (ML) models are widely deployed on edge nodes, such as mobile phones and edge servers, to power a wide range of AI applications over the web. Ensuring the integrity of these edge models is paramount, as they are subject to corruption caused by software/hardware exceptions and malicious tampering, which may undermine model performance, incur economic losses, and pose health risks. Existing data integrity mechanisms designed for files stored on disks cannot properly verify the integrity of models running in GPUs or mitigate the new integrity threats against edge models. This paper proposes EdgeThemis, a novel mechanism for verifying the integrity of edge models through sentinel verification. To enable verifiability for a model M, EdgeThemis embeds a sentinel backdoor and a verification module into M. Then, a challenger can send verification requests to the edge node hosting M to verify its integrity. Next, the sentinel activates the verification module to generate a unique integrity proof tied to the identity of the edge node for verification. Finally, the challenger can verify the integrity proof to detect model corruption. Theoretical analysis proves that EdgeThemis can properly mitigate potential integrity threats against edge models. Experiments demonstrate that EdgeThemis achieves a verification accuracy of 100.00% across various models and different types of model corruption with robustness against replay attacks, theft attacks, and replacement attacks. © 2025 Copyright held by the owner/author(s).

关键词： Backpropagation

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Efficient FPGA-based graph processing with hybrid pull-push computational model

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Frontiers of Computer Science 2020年第4期14卷 13-28页

作者： Chengbo YANG Long ZHENG Chuangyi GUI Hai JIN National Engineering Research Center for Big Data Technology and System/Service Computing Technology and System Lab/Cluster and Grid Computing Lab School of Computer Science and TechnologyHuazhong University of Science and TechnologyWuhan430074China

Hybrid pull-push computational model can provide compelling results over either of single one for processing real-world *** and pipeline parallelism of FPGAs make it potential to process different stages of graph ***,considering the limited on-chip resources and streamline pipeline computation,the efficiency of hybrid model on FPGAs often suffers due to well-known random access feature of graph *** this paper,we present a hybrid graph processing system on FPGAs,which can achieve the best of both *** approach on FPGAs is unique and novel as ***,we propose to use edge block(consisting of edges with the same destination vertex set),which allows to sequentially access edges at block granularity for locality while still preserving the *** to the independence of blocks in the sense that all edges in an inactive block are associated with inactive vertices,this also enables to skip invalid blocks for reducing redundant ***,we consider a large number of vertices and their associated edge-blocks to maintain a predictable execution *** also present to switch models in advance with few stalls using their state *** evaluation on a wide variety of graph algorithms for many real-world graphs shows that our approach achieves up to 3.69x speedup over state-of-the-art FPGA-based graph processing systems.

关键词： graph processing efficiency computational model FPGAs

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How to Select Pre-Trained Code Models for Reuse? A Learning Perspective

How to Select Pre-Trained Code Models for Reuse? A Learning ...

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IEEE International Conference on Software Analysis, Evolution and Reengineering (SANER)

作者： Zhangqian Bi Yao Wan Zhaoyang Chu Yufei Hu Junyi Zhang Hongyu Zhang Guandong Xu Hai Jin National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab Cluster and Grid Computing Lab Wuhan China School of Computer Science and Technology Huazhong University of Science and Technology Wuhan China School of Big Data and Software Engineering Chongqing University Chongqing China School of Computer Science University of Technology Sydney Sydney Australia

ISBN: (数字)9798331535100

ISBN: (纸本)9798331535117

Pre-training a language model and then fine-tuning it has shown to be an efficient and effective technique for a wide range of code intelligence tasks, such as code generation, code summarization, and vulnerability detection. However, pre-training language models on a large-scale code corpus is compu-tationally expensive. Fortunately, many off-the-shelf Pre-trained Code Models (PCMs), such as CodeBERT, CodeT5, CodeGen, and Code Llama, have been released publicly. These models acquire general code understanding and generation capability during pre-training, which enhances their performance on downstream code intelligence tasks. With an increasing number of these public pre-trained models, selecting the most suitable one to reuse for a specific task is essential. In this paper, we systematically investigate the reusability of PCMs. We first explore three intuitive model selection methods that select by size, training data, or brute-force fine-tuning. Experimental results show that these straightforward techniques either perform poorly or suffer high costs. Motivated by these findings, we explore learning-based model selection strategies that utilize pre-trained models without altering their parameters. Specifically, we train proxy models to gauge the performance of pre-trained models, and measure the distribution deviation between a model's latent features and the task's labels, using their closeness as an indicator of model transferability. We conduct experiments on 100 widely-used open-source PCMs for code intelligence tasks, with sizes ranging from 42.5 million to 3 billion parameters. The results demonstrate that learning-based selection methods reduce selection time to 100 seconds, compared to 2,700 hours with brute-force fine-tuning, with less than 6% performance degradation across related tasks.

关键词： Phase change materials Analytical models Adaptation models Codes Costs Computational modeling Training data Machine learning Software Software development management

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MeHyper: Accelerating Hypergraph Neural Networks by Exploring Implicit Dataflows

MeHyper: Accelerating Hypergraph Neural Networks by Explorin...

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IEEE Symposium on High-Performance Computer Architecture

作者： Wenju Zhao Pengcheng Yao Dan Chen Long Zheng Xiaofei Liao Qinggang Wang Shaobo Ma Yu Li Haifeng Liu Wenjing Xiao Yufei Sun Bing Zhu Hai Jin Jingling Xue National Engineering Research Center for Big Data Technology and System/Services Computing Technology and System Lab/Cluster and Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology Wuhan China School of Computing National University of Singapore Singapore School of Computer Electronics and Information Guangxi University NanNing China School of Computer Science and Engineering University of New South Wales Sydney NSW Australia

ISBN: (数字)9798331506476

ISBN: (纸本)9798331506483

Hypergraph Neural Networks (HGNNs) are increasingly utilized to analyze complex inter-entity relationships. Traditional HGNN systems, based on a hyperedge-centric dataflow model, independently process aggregation tasks for hyperedges and vertices, leading to significant computational redundancy. This redundancy arises from recalculating shared information across different tasks. For the first time, we identify and harness implicit dataflows (i.e., dependencies) within HGNNs, introducing the microedge concept to effectively capture and reuse intricate shared information among aggregation tasks, thereby minimizing redundant computations. We have developed a new microedge-centric dataflow model that processes shared information as fine-grained microedge aggregation tasks. This dataflow model is supported by the Read-Process-Activate-Generate execution model, which aims to optimize parallelism among these tasks. Furthermore, our newly developed MeHyper, a microedge-centric HGNN accelerator, incorporates a decoupled pipeline for improved computational parallelism and a hierarchical feature management strategy to reduce off-chip memory accesses for large volumes of intermediate feature vectors generated. Our evaluation demonstrates that MeHyper substantially outperforms the leading CPUbased system PyG-CPU and the GPU-based system HyperGef, delivering performance improvements of $1,032.23 \times$ and $10.51 \times$, and energy efficiencies of $1,169.03 \times$ and $9.96 \times$, respectively.

关键词： Computational modeling Neural networks Redundancy Pipelines Memory management Parallel processing Vectors Energy efficiency Hardware acceleration

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Automated Data Visualization from Natural Language via Large Language Models: An Exploratory Study

arXiv

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arXiv 2024年

作者： Wu, Yang Wan, Yao Zhang, Hongyu Sui, Yulei Wei, Wucai Zhao, Wei Xu, Guandong Jin, Hai Huazhong University of Science and Technology China Chongqing University China University of New South Wales Australia University of Technology Sydney Australia National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab Cluster and Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology Wuhan430074 China

The Natural Language to Visualization (NL2Vis) task aims to transform natural-language descriptions into visual representations for a grounded table, enabling users to gain insights from vast amounts of data. Recently, many deep learning-based approaches have been developed for NL2Vis. Despite the considerable efforts made by these approaches, challenges persist in visualizing data sourced from unseen databases or spanning multiple tables. Taking inspiration from the remarkable generation capabilities of Large Language Models (LLMs), this paper conducts an empirical study to evaluate their potential in generating visualizations, and explore the effectiveness of in-context learning prompts for enhancing this task. In particular, we first explore the ways of transforming structured tabular data into sequential text prompts, as to feed them into LLMs and analyze which table content contributes most to the NL2Vis. Our findings suggest that transforming structured tabular data into programs is effective, and it is essential to consider the table schema when formulating prompts. Furthermore, we evaluate two types of LLMs: finetuned models (e.g., T5-Small) and inference-only models (e.g., GPT-3.5), against state-of-the-art methods, using the NL2Vis benchmarks (i.e., nvBench). The experimental results reveal that LLMs outperform baselines, with inference-only models consistently exhibiting performance improvements, at times even surpassing fine-tuned models when provided with certain few-shot demonstrations through in-context learning. Finally, we analyze when the LLMs fail in NL2Vis, and propose to iteratively update the results using strategies such as chain-of-thought, role-playing, and code-interpreter. The experimental results confirm the efficacy of iterative updates and hold great potential for future study. © 2024, CC BY.

关键词： Data visualization

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