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2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023

作者： Guo, Kuo Li, Yifan Chen, Hao Shen, Hong-Bin Yang, Yang Shanghai Jiao Tong University Key Lab. of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering Department of Computer Science and Engineering Shanghai200240 China Shanghai Jiao Tong University Key Laboratory of System Control and Information Processing Ministry of Education of China Institute of Image Processing and Pattern Recognition Shanghai200240 China Carnegie Mellon University School of Computer Science Computational Biology Department PittsburghPA15213 United States

ISBN: (纸本)9798350337488

Isoforms refer to different mRNA molecules transcribed from the same gene, which can be translated into proteins with varying structures and functions. Predicting the functions of isoforms is an essential topic in bioinformatics as it can provide valuable insights into the intricate mechanisms of gene regulation and biological processes. Conventionally, gene function labels are standardized in Gene Ontology (GO) terms. However, traditional methods for predicting isoform function are largely limited by the absence of isoform-specific labels, sparse annotations, and the vast number of GO terms. To address these issues, we propose HANIso, a deep learning-based method for isoform function prediction. HANIso leverages a pretrained protein language model to extract features from protein sequences. It also integrates heterogeneous information, such as isoform sequence features, GO annotations, and isoform interaction data, using a Heterogeneous Graph Attention Network (HAN). This allows the model to learn the importance of different sources of information and their semantic relationships through the attention mechanism. Our method can predict function labels at both the gene level and isoform level. We conduct experiments on two species datasets, and the results demonstrate that our method outperforms existing methods on both AUROC and AUPRC. HANIso has the potential to overcome the limitations of traditional methods and provide a more accurate and comprehensive understanding of isoform function. © 2023 IEEE.

关键词： alternative splicing gene ontology heterogeneous graph attention network isoform function prediction protein language model

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Discrete-time inverse linear quadratic optimal control over fnite time-horizon under noisy output measurements

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control Theory and Technology 2021年第4期19卷 563-572页

作者： Han Zhang Yibei Li Xiaoming Hu Department of Automation Shanghai Jiao Tong UniversityShanghai 200240China Key Laboratory of System Control and Information Processing Ministry of Education of ChinaShanghai 200240China Shanghai Engineering Research Center of Intelligent Control and Management Shanghai 200240China Department of Mathematics KTH Royal Institute of Technology10044 StockholmSweden

In this paper,the problem of inverse quadratic optimal control over fnite time-horizon for discrete-time linear systems is *** goal is to recover the corresponding quadratic objective function using noisy ***,the identifability of the model structure for the inverse optimal control problem is analyzed under relative degree assumption and we show the model structure is strictly globally ***,we study the inverse optimal control problem whose initial state distribution and the observation noise distribution are unknown,yet the exact observations on the initial states are *** formulate the problem as a risk minimization problem and approximate the problem using empirical *** is further shown that the solution to the approximated problem is statistically consistent under the assumption of relative *** then study the case where the exact observations on the initial states are not available,yet the observation noises are known to be white Gaussian distributed and the distribution of the initial state is also Gaussian(with unknown mean and covariance).EM-algorithm is used to estimate the parameters in the objective *** efectiveness of our results are demonstrated by numerical examples.

关键词： Inverse optimal control Linear quadratic regulator Statistical consistency EM-algorithm

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Bearing-based Formation Tracking of Nonholonomic Agents in the Leader's Local Frame

Bearing-based Formation Tracking of Nonholonomic Agents in t...

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2021 China Automation Congress, CAC 2021

作者： Lv, Ke Yang, Ziwen Zhu, Shanying Wang, Lin Department of Automation Shanghai Jiao Tong University Key Laboratory of System Control and Information Processing Ministry of Education of China Shanghai Engineering Research Center of Intelligent Control and Management Shanghai China

ISBN: (纸本)9781665426473

This paper investigates the formation tracking control problem of nonholonomic agents in the leader's local frame, based on bearing measurements. Most of existing works on formation tracking are aimed at tracking a given formation in the global frame, which cannot meet the needs of many applications such as a fleet of cars driving on the highway. In this case, if the cars cannot keep a fixed formation in the leader's local frame, they may drive off the highway. Thus we propose an integrated approach consisting of a bearing-based estimator and a tracking controller, to track a given formation in the leader's local frame. In order to eliminate the estimation error in formation tracking, a persistently exciting leader is characterized by conditions. The stability of the integrated method is proved rigorously. Simulation results prove the effectiveness of the proposed approach. © 2021 IEEE

关键词： Integrated control

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Bearing-only Formation control of Nonholonomic Agents with Unknown Dynamic Leaders

Bearing-only Formation Control of Nonholonomic Agents with U...

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2021 China Automation Congress, CAC 2021

作者： Su, Haifan Yang, Ziwen Zhu, Shanying Chen, Cailian Department of Automation Shanghai Jiao Tong University Key Laboratory of System Control and Information Processing Ministry of Education of China Shanghai Engineering Research Center of Intelligent Control and Management Shanghai China

ISBN: (纸本)9781665426473

In this paper, the problem of bearing-only formation tracking control of multiple nonholonomic agents is studied. A leader-follower structure is adopted, where the leaders are moving at an unknown constant linear velocity and time-varying orientation. To solve the problem using bearing-only measurements, a finite-time estimator is firstly proposed to estimate the leaders' orientation information. Then, an adaptation law for estimating the leaders' linear velocity is proposed, based on which control inputs for tracking the leaders in a predefined bearing-based formation are designed, so that formation tracking can be achieved asymptotically. Rigorous theoretical analysis of the closed-loop system is given. It is proved that both the estimation errors and formation errors converge to zero under the connectivity of the communication graph and conditions for bearing rigidity. Numerical simulations are presented to testify the effectiveness of the proposed method. © 2021 IEEE

关键词： Closed loop systems

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CBS-GAN: A Band Selection Based Generative Adversarial Net for Hyperspectral Sample Generation 3

CBS-GAN: A Band Selection Based Generative Adversarial Net f...

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2021 3rd International Forum on Geoscience and Oceanography, IFGO 2021

作者： Qiao, Yulin Mohammad, Mostofa Zaman Li, Yi Liu, Xiaobo Cai, Zhihua Wuhan430074 China Hubei Key Laboratory of Advanced Control and Intelligent Automation for Complex Systems Wuhan430074 China Wuhan430078 China Hubei Key Laboratory of Intelligent Geo-Information Processing China University of Geosciences Wuhan430078 China

Sample generation is an effective method to improve the performance of hyperspectral image classification by generating virtual samples for training sample expansion in the training process of classification. However, there are some defects existing in the previous sample generation methods including the lack of spatial information, the redundant generation and the damage of the original spectral components. In this paper, we propose conditional band selection generative adversarial net, named CBS-GAN, to handle this problem. Firstly, the band selection net of CBS-GAN is utilized to avoid redundant bands and keep original spectral information, then the generation net of CBS-GAN generates the spatial-spectral data blocks by selected bands for sample generation. The experiments of classification are also used to demonstrate the availability of virtual samples generated by our method. © Published under licence by IOP Publishing Ltd.

关键词： Image enhancement

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Capacity Optimization of a Hybrid Energy Storage system Considering Wind-Solar Reliability Evaluation Based on a Novel Multi-Strategy Snake Optimization Algorithm

SSRN

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SSRN 2022年

作者： Wang, Chen Jiao, Shangbin Li, Yujun Zhang, Qing School of Automation and Information Engineering Xi’an University of Technology Xi’an710048 China Shaanxi Key Laboratory of Complex System Control and Intelligent Information Processing Xi’an University of Technology Xi’an710048 China

When the capacity configuration of a hybrid energy storage system (HESS) is optimized considering the reliability of a wind turbine and photovoltaic generator (PVG), the sequential Monte Carlo method is typically adopted to simulate the normal operation and fault probability of wind turbines and PVG units. The capacity optimization configuration model of the HESS is constructed with the life cost cycle (LCC) as an objective and the loss of power supply probability (LPSP) as constraints. The variational mode decomposition is used to decompose the unbalanced power in the wind-PV microgrid. The maximum power of the optimized the battery bank and the supercapacitor bank are used to determine the frequency division point, and the high-frequency power and low-frequency power are respectively allocated to the supercapacitor bank and the battery bank. When the snake optimizer (SO) is used to solve the nonconvex capacity optimization configuration model of the HESS, poor accuracy and stability are significant problems. The opposition-based learning, adaptive weight factor, and Lévy flight strategy are introduced in the algorithm framework. Twenty-three test functions show that multi strategy snake optimizer (MSO) significantly improves the accuracy and convergence speed compared with SO. Nine optimization algorithms including MSO are used to solve the capacity optimization problem of the HESS. The results show that MSO is superior to other algorithms in performance and numerical accuracy. It can reduce the LCC 4.5% and ensure that the capacity of the HESS meets the load demand when the wind turbine and PVGs are in a fault state. © 2022, The Authors. All rights reserved.

关键词： Variational mode decomposition

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A Dual-Optimization Fault Diagnosis Method For Rolling Bearing Based On Hierarchical Slope Entropy And SVM Synergized with Shark Optimization Algorithm

SSRN

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SSRN 2022年

作者： Li, Yuxing Tang, Bingzhao Huang, Bo Jiao, Shangbin Xue, Xiaohui School of Automation and Information Engineering Xi’an University of Technology Xi’an710048 China Shaanxi Key Laboratory of Complex System Control and Intelligent Information Processing Xi’an University of Technology Xi’an710048 China

Slope entropy (SlopEn) has been widely applied in fault diagnosis and has performed excellent performance, while SlopEn suffers from the problem of thresholds selection. Aim to further enhance the identifying capability of SlopEn in fault diagnosis, on basis of the SlopEn, the concept of hierarchy is combined and proposed new complexity feature, namely hierarchical slope entropy (HSlopEn). Meanwhile, the white shark optimizer (WSO) is applied to optimize the both HSlopEn and support vector machine (SVM), and WSO-HSlopEn and WSO-SVM are proposed respectively. Then, a dual-optimization fault diagnosis method for rolling bearing based on WSO-HSlopEn and WSO-SVM is put forward. Firstly, different types of bearing signals are input and decomposed into several nodes by hierarchical decomposition. Then taking the recognition rate as the fitness function, the parameters of HSlopEn and SVM are determined adaptively by WSO. After that, the WSO-HSlopEn of the nodes are extracted and single-feature and multi-features extraction are performed. Finally, the diagnosis results are output by WSO-SVM. Experimental results demonstrated that whether under single-feature or multi-features, based on WSO-HSlopEn and WSO-SVM fault diagnosis method has the highest recognition rate compared to other hierarchical entropies;moreover, under multi-features, the recognition rates are all higher than 97.5%, and the more features we select, the better the recognition effect will be. when five nodes are selected, the highest recognition rate reaches 100%. © 2022, The Authors. All rights reserved.

关键词： Support vector machines

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Real-Time Solution of Unsteady Inverse Heat Conduction Problem Based on Improved Whale Optimization Algorithm and Parameter-Adaptive Pid

SSRN

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SSRN 2022年

作者： Huang, Weichao Li, Jiahao Liu, Ding Shannxi Key Laboratory of Complex System Control and Intelligent Information Processing Xi’an University of Technology Xi’an710048 China School of Automation and Information Engineering Xi’an University of Technology Xi’an710048 China

To the common unsteady inverse heat conduction problem in the industrial field, a real-time solution strategy of improving whale optimization algorithm (IWOA) and parameter-adaptive Proportional-integral-differential (PID) is proposed in the paper. This strategy improves the initial solution distribution, global search capability and population diversity generalization of traditional WOA, which effectively improves the parameters-adaptive capability of PID. In solving the unsteady inverse heat conduction problem, the IWOA-PID feedback control model is first established to adaptively obtain the optimal PID parameters at each time. Then, the deviation between the calculated temperature and the measured temperature of the measured point obtained by solving the direct heat conduction problem (DHCP) is used as the system input. Finally, the real-time heat flux at the boundary of the heat conduction system is solved iteratively. The experimental results shown that the inverse algorithm proposed in the paper can accurately retrieve the variation of the boundary heat flux in real-time, and has good resistance and self-adaptability. © 2022, The Authors. All rights reserved.

关键词： Heat flux

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Missile-Target Situation Assessment Model Based on Reinorcement Learning

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Journal of Shanghai Jiaotong university(Science) 2020年第5期25卷 561-568页

作者： ZHANG Yun LU Runyan CAI Yunze Department of Automation Key Laboratory of System Control and Information Processing of Ministry of EducationKey Laboratory of Marine Intelligent Equipment and System of Ministry of EducationShanghai Jiao Tong UniversityShanghai 200240China

In situation assessment(SA)of missile versus target fighter,the traditional SA models generally have the characteristics of strong subjectivity and poor dynamic *** paper considers SA as an expectation of future returns and establishes a missile-target simulation battle *** actor-critic(AC)algorithm in reinforcement learning(RL)is used to train the evaluation network,and a missile-target SA model is established in simulation battle *** and comparative experiments show that the model can effectively estimate the expected effect of missile attack under the current situation,and it provides an effective basis for missile attack decision.

关键词： situation assessment(SA) battle model reinforcement learning(RL) actor-critic(AC)algorithm

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Entity Representation Learning with Multimodal Neighbors for Link Prediction in Knowledge Graph 7

Entity Representation Learning with Multimodal Neighbors for...

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7th International Conference on Computer and Communications, ICCC 2021

作者： Liu, Wenxuan Duan, Hao Li, Zeng Liu, Jingdong Huo, Hong Fang, Tao Shanghai Jiao Tong University Department of Automation China Key Laboratory of System Control and Information Processing Ministry of Education of China China Shanghai Engineering Research Center of Intelligent Control and Management China

ISBN: (纸本)9781665409506

Entity representation learning is both fundamental and crucial for link prediction in knowledge graph. Existing entity representation learning approaches mainly focus on learning from knowledge triples with single modal text data which could only describe the things or concepts in words. However, multimodal data commonly exists in the real worlds and may describe things or concepts from different aspects. Therefore, multimodal entities have emerged in knowledge graph in recent years, which greatly enrich the knowledge graph by different information. This paper focuses on how to learn more robust and comprehensive representations of multimodal entities for better link prediction. A new representation learning method for multimodal entities is proposed, called Graph Attention with Bi-pooling Representation Learning (GBRL), where multimodal fusion and knowledge embedding are combined for learning representations of an entity with consideration of its multimodal neighbors. Firstly, feature vectors are obtained by pre-trained models for each modality. Then, the bilinear pooling is utilized for combining feature vectors of multimodal entities into multimodal feature vectors. A two-layer graph attention module is followed to generate multimodal representations of an entity from its multimodal neighbors. Finally, the inception decoder uses multimodal knowledge embedding to calculate scores for link prediction. The experimental results have shown that the proposed method performs well on link prediction by consideration of multimodal entities comparing with traditional methods that using only single modal text data. © 2021 IEEE.

关键词： Knowledge graph

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