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Fast Data-independent KLT Approximations Based on Integer Functions

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arXiv 2024年

作者： Radünz, A.P. Coelho, D.F.G. Bayer, F.M. Cintra, R.J. Madanayake, A. Graduate Program in Statistics Universidade Federal de Pernambuco Recife Brazil Calgary Canada Departamento de Estatística and LACESM Universidade Federal de Santa Maria Santa Maria97105-900 Brazil Signal Processing Group Department of Technology Universidade Federal de Pernambuco Caruaru Brazil Department of Electrical and Computer Engineering Florida International University FL33174 United States

The Karhunen-Loève transform (KLT) stands as a well-established discrete transform, demonstrating optimal characteristics in data decorrelation and dimensionality reduction. Its ability to condense energy compression into a select few main components has rendered it instrumental in various applications within image compression frameworks. However, computing the KLT depends on the covariance matrix of the input data, which makes it difficult to develop fast algorithms for its implementation. Approximations for the KLT, utilizing specific rounding functions, have been introduced to reduce its computational complexity. Therefore, our paper introduces a category of low-complexity, data-independent KLT approximations, employing a range of round-off functions. The design methodology of the approximate transform is defined for any block-length N, but emphasis is given to transforms of N = 8 due to its wide use in image and video compression. The proposed transforms perform well when compared to the exact KLT and approximations considering classical performance measures. For particular scenarios, our proposed transforms demonstrated superior performance when compared to KLT approximations documented in the literature. We also developed fast algorithms for the proposed transforms, further reducing the arithmetic cost associated with their implementation. Evaluation of field programmable gate array (FPGA) hardware implementation metrics was conducted. Practical applications in image encoding showed the relevance of the proposed transforms. In fact, we showed that one of the proposed transforms outperformed the exact KLT given certain compression ratios. Copyright © 2024, The Authors. All rights reserved.

关键词： Image compression

An overview of deep learning in medical imaging

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Informatics in Medicine Unlocked 2021年 26卷

作者： Anaya-Isaza, Andrés Mera-Jiménez, Leonel Zequera-Diaz, Martha Pontificia Universidad Javeriana Bogotá 110231 Colombia Faculty of Engineering Bioengineering Program Universidad de Antioquia Medellín 050010 Colombia School of Engineering BASPI/FootLab (Bioengineering Signal Analysis And Image Processing Research Group) Pontificia Universidad Javeriana Bogotá 110231 Colombia INDIGO Research Bogotá 110221 Colombia

Deep learning (DL) is one of the branches of artificial intelligence that has seen exponential growth in recent years. The scientific community has focused its attention on DL due to its versatility, high performance, high generalization capacity, and multidisciplinary uses, among many other qualities. In addition, a large amount of medical data and the development of more powerful computers has also fostered an interest in this area. This paper presents an overview of current deep learning methods, starting from the most straightforward concept but accompanied by the mathematical models that are behind the functionality of this type of intelligence. In the first instance, the fundamental concept of artificial neural networks is introduced, progressively covering convolutional structures, recurrent networks, attention models, up to the current structure known as the Transformer. Secondly, all the basic concepts involved in training and other common elements in the design of the architectures are introduced. Thirdly, some of the key elements in modern networks for medical image classification and segmentation are shown. Subsequently, a review of some applications realized in the last years is shown, where the main features related to DL are highlighted. Finally, the perspectives and future expectations of deep learning are presented. © 2021 The Authors

关键词： Attention models Convolutional neural networks Deep learning Medical imaging Recurrent neural networks Transformers

Impact of scanner variability on lymph node segmentation in computational pathology

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Journal of Pathology Informatics 2022年 13卷 100127-100127页

作者： Khan, Amjad Janowczyk, Andrew Müller, Felix Blank, Annika Nguyen, Huu Giao Abbet, Christian Studer, Linda Lugli, Alessandro Dawson, Heather Thiran, Jean-Philippe Zlobec, Inti Institute of Pathology University of Bern Murtenstrasse 31 Bern CH-3008 Switzerland Case Western Reserve University Department of Biomedical Engineering Cleveland 44106 OH United States Department of Oncology Lausanne University Hospital and Lausanne University Lausanne Switzerland Swiss Federal Institute of Technology Lausanne (EPFL) Signal Processing Laboratory (LTS5) Lausanne Switzerland Institute of Complex Systems (iCoSyS) University of Applied Sciences and Arts Western Switzerland Delémont Switzerland Document Image and Video Analysis (DIVA) Research Group Department of Informatics University of Fribourg Fribourg Switzerland Department of Radiology Lausanne University Hospital Lausanne University Centre d'Imagerie Biomédicale (CIBM) Lausanne Switzerland Institute of Pathology City Hospital Triemli Zürich Switzerland

Computer-aided diagnostics in histopathology are based on the digitization of glass slides. However, heterogeneity between the images generated by different slide scanners can unfavorably affect the performance of computational algorithms. Here, we evaluate the impact of scanner variability on lymph node segmentation due to its clinical importance in colorectal cancer diagnosis. 100 slides containing 276 lymph nodes were digitized using 4 different slide scanners, and 50 of the lymph nodes containing metastatic cancer cells. These 400 scans were subsequently annotated by 2 experienced pathologists to precisely label lymph node boundary. Three different segmentation methods were then applied and compared: Hematoxylin-channel-based thresholding (HCT), Hematoxylin-based active contours (HAC), and a convolution neural network (U-Net). Evaluation of U-Net trained from both a single scanner and an ensemble of all scanners was completed. Mosaic images based on representative tiles from a scanner were used as a reference image to normalize the new data from different test scanners to evaluate the performance of a pre-trained model. Fine-tuning was carried out by using weights of a model trained on one scanner to initialize model weights for other scanners. To evaluate the domain generalization, domain adversarial learning and stain mix-up augmentation were also implemented. Results show that fine-tuning and domain adversarial learning decreased the impact of scanner variability and greatly improved segmentation across scanners. Overall, U-Net with stain mix-up (Matthews correlation coefficient (MCC) = 0.87), domain adversarial learning (MCC = 0.86), and HAC (MCC = 0.87) were shown to outperform HCT (MCC = 0.81) for segmentation of lymph nodes when compared against the ground truth. The findings of this study should be considered for future algorithms applied in diagnostic routines. © 2022 The Author(s)

关键词： Colorectal cancer Computational pathology Domain generalization Fine tuning Lymph node Lymph node segmentation Scanner variability Whole slide image

NTIRE 2020 Challenge on Real-World Image Super-Resolution: Methods and Results

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arXiv 2020年

作者： Lugmayr, Andreas Danelljan, Martin Timofte, Radu Ahn, Namhyuk Bai, Dongwoon Cai, Jie Cao, Yun Chen, Junyang Cheng, Kaihua Chun, SeYoung Deng, Wei El-Khamy, Mostafa Man Ho, Chiu Ji, Xiaozhong Kheradmand, Amin Kim, Gwantae Ko, Hanseok Lee, Kanghyu Lee, Jungwon Li, Hao Liu, Ziluan Liu, Zhi-Song Liu, Shuai Lu, Yunhua Meng, Zibo Navarrete Michelini, Pablo Micheloni, Christian Prajapati, Kalpesh Ren, Haoyu Hyeok Seo, Yong Siu, Wan-Chi Sohn, Kyung-Ah Tai, Ying Muhammad Umer, Rao Wang, Shuangquan Wang, Huibing Haoning Wu, Timothy Wu, Haoning Yang, Biao Yang, Fuzhi Yoo, Jaejun Zhao, Tongtong Zhou, Yuanbo Zhuo, Haijie Zong, Ziyao Zou, Xueyi Wang, Li-Wen Cani, Marie-Paule Siu, Wan-Chi Yang, Huan Fu, Jianlong Shi, Yukai Chen, Junyang Lee, Kanghyu Park, Jaihyun Lee, Junyeop Min, Jeongki Lee, Bokyeung Ko, Hanseok Yoo, Jaejun Sohn, Kyung-Ah Micheloni, Christian Hu, Fengshuo Wang, Yanhong Lu, Yunhua Peng, Jinjia Wang, Huibing Zhuo, Haijie Lee, Junyeop Min, Jeongki Lee, Bokyeung Park, Jaihyun Ko, Hanseok Tai, Lab Ying Jilin Li, Youtu Lab Liu, Shuai Yang, Biao Liu, Xing Chen, Shuaijun Zhao, Lei Wang, Zhan Lin, Yuxuan Jia, Xu Gao, Qinquan Deng, Wei Kheradmand, Amin El-Khamy, Mostafa Wang, Shuangquan Bai, Dongwoon Lee, Jungwon Patel, Heena Chudasama, Vishal Upla, Kishor Ramachandra, Raghavendra Raja, Kiran Busch, Christoph Meng, Zibo Ho, Chiu Man Computer Vision Lab ETH Zurich Switzerland LIX - Computer science laboratory at the cole polytechnique Palaiseau France Center of Multimedia Signal Processing Hong Kong Polytechnic University Hong Kong Shanghai Jiao Tong University China Microsoft Research Beijing China Guangdong University of Technology China Intelligent Signal Processing Laboratory Korea University Korea Republic of Ajou University Korea Republic of EPFL University of Udine Italy BOE Technology Group Co. Ltd Dalian Maritime University China Guangdong OPPO Mobile Telecommunications Corp. Ltd Department of Video Information Processing Korea University Korea Republic of School of Electrical Engineering Korea University Korea Republic of Tencent Youtu Lab Yun Cao Tencent Youtu Tencent Youtu Lab Chengjie Wang Tencent Tencent Youtu Lab Feiyue Huang Tencent Youtu Lab Peking University China North China University of Technology China Huawei Technologies Co. Ltd China Fuzhou University Tong Tong Fuzhou University Imperial Vision Technology China Fuzhou University Imperial Vision Technology China Imperial Vision Technology SOC R&D Samsung Semiconductor Inc. United States Ulsan national institute of science and technology Korea Republic of Sardar Vallabhbhai National Institute Of Technology Surat India Norwegian University of Science and Technology Gjøvik Norway InnoPeak Technology

This paper reviews the NTIRE 2020 challenge on real world super-resolution. It focuses on the participating methods and final results. The challenge addresses the real world setting, where paired true high and low-resolution images are unavailable. For training, only one set of source input images is therefore provided along with a set of unpaired high-quality target images. In Track 1: Image processing artifacts, the aim is to super-resolve images with synthetically generated image processing artifacts. This allows for quantitative benchmarking of the approaches w.r.t. a ground-truth image. In Track 2: Smartphone Images, real low-quality smart phone images have to be super-resolved. In both tracks, the ultimate goal is to achieve the best perceptual quality, evaluated using a human study. This is the second challenge on the subject, following AIM 2019, targeting to advance the state-of-the-art in super-resolution. To measure the performance we use the benchmark protocol from AIM 2019. In total 22 teams competed in the final testing phase, demonstrating new and innovative solutions to the problem. Copyright © 2020, The Authors. All rights reserved.

关键词： Optical resolving power

Self-Awareness for Autonomous Systems

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PROCEEDINGS OF THE IEEE 2020年第7期108卷 971-975页

作者： Dutt, Nikil Regazzoni, Carlo S. Rinner, Bernhard Yao, Xin Nikil Dutt (Fellow IEEE) received the Ph.D. degree from the University of Illinois at Urbana–Champaign Champaign IL USA in 1989.""He is currently a Distinguished Professor of computer science (CS) cognitive sciences and electrical engineering and computer sciences (EECS) with the University of California at Irvine Irvine CA USA. He is a coauthor of seven books. His research interests include embedded systems electronic design automation (EDA) computer architecture distributed systems healthcare Internet of Things (IoT) and brain-inspired architectures and computing.""Dr. Dutt is a Fellow of ACM. He was a recipient of the IFIP Silver Core Award. He has received numerous best paper awards. He serves as the Steering Committee Chair of the IEEE/ACM Embedded Systems Week (ESWEEK). He is also on the steering organizing and program committees of several premier EDA and embedded system design conferences and workshops. He has served on the Editorial Boards for the IEEE Transactions on Very Large Scale Integration (VLSI) Systems and the ACM Transactions on Embedded Computing Systems and also previously served as the Editor-in-Chief (EiC) for the ACM Transactions on Design Automation of Electronic Systems. He served on the Advisory Boards of the IEEE Embedded Systems Letters the ACM Special Interest Group on Embedded Systems the ACM Special Interest Group on Design Automationt and the ACM Transactions on Embedded Computing Systems. Carlo S. Regazzoni (Senior Member IEEE) received the M.S. and Ph.D. degrees in electronic and telecommunications engineering from the University of Genoa Genoa Italy in 1987 and 1992 respectively.""He is currently a Full Professor of cognitive telecommunications systems with the Department of Electrical Electronics and Telecommunication Engineering and Naval Architecture (DITEN) University of Genoa and a Co-Ordinator of the Joint Doctorate on Interactive and Cognitive Environments (JDICE) international Ph.D. course started initially as EU Erasmus Mundus Project and

Autonomous systems are able to make decisions and potentially take actions without direct human intervention, which requires some knowledge about the system and its environment as well as goal-oriented reasoning. In computer systems, one can derive such behavior from the concept of a rational agent with autonomy (“control over its own actions”), reactivity (“react to events from the environment”), proactivity (“act on its own initiative”), and sociality (“interact with other agents”) as fundamental properties \n[1]\n. Autonomous systems will undoubtedly pervade into our everyday lives, and we will find them in a variety of domains and applications including robotics, transportation, health care, communications, and entertainment to name a few. \nThe articles in this month’s special issue cover concepts and fundamentals, architectures and techniques, and applications and case studies in the exciting area of self-awareness in autonomous systems.

关键词： Special issues and sections Autonomous systems Self-aware Robot sensing systems Computational modeling

Real-Time 2-D FIR Trapezoidal Digital Filters for 2.4 GHz Aperture Receiver Applications

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Real-Time 2-D FIR Trapezoidal Digital Filters for 2.4 GHz Ap...

Moratuwa Engineering Research Conference (MERCon)

作者： Viduneth Ariyarathna Vítor A. Coutinho Sravan Pulipati Arjuna Madanayake Ravi T. Wijesekara Chamira U. S. Edussooriya‡ Len T. Bruton§ Thushara K. Gunaratne Renato J. Cintra Dept. of Electrical and Computer Engineering University of Akron USA Grad. Program in Electrical Engineering and Signal Processing Group Statistics UFPE Brazil Dept. of Electronic and Telecommunication Engineering University of Moratuwa Sri Lanka University of Moratuwa Moratuwa LK University of Calgary Calgary AB CA Herzberg Astronomy and Astrophysics National Research Council Canada

This paper presents the implementation of a two-dimensional (2-D) finite-impulse-response (FIR) trapezoidal filter based beamforming array receiver. A 2.4 GHz 16-element receive-mode IQ array is designed and used for physically measuring the beam patterns corresponding to 2-D FIR trapezoidal filters. The 16-element beamformer is implemented using the reconfigurable open architecture computing hardware version-2 (ROACH-2) field programmable gate array (FPGA) platform to perform analog to digital conversion and digital signal processing. The 2-D FIR trapezoidal filter is designed as a 16-spatial input 32-tap filter and is implemented targeting the ROACH-2's Xilinx Virtex 6 (sx475t) FPGA chip as a filter-and-sum architecture. The receiver array is precisely rotated (keeping the transmitter fixed) to digitally measure the received energy by integrating the instantaneous power of the output of the 2-D FIR trapezoidal filter for each angle of reception. The main lobe of the measured beam pattern is well aligned with the simulated beam pattern, and the highest measured side-lobe level is -17.8 dB.

关键词： Finite impulse response filters Array signal processing Antenna arrays Receivers Extraterrestrial measurements Computer architecture Field programmable gate arrays

Unsupervised extraction of phenotypes from cancer clinical notes for association studies

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arXiv 2019年

作者： Stark, Stefan G. Hyland, Stephanie L. Pradier, Melanie F. Lehmann, Kjong-Van Wicki, Andreas Perez-Cruz, Fernando Vogt, Julia E. Rätsch, Gunnar Computational Biology Program Memorial Sloan Kettering Cancer Center New York United States Tri-Institutional Ph.D. Program in Computational Biology and Medicine Weill Cornell Medicine New York United States Department of Computer Science ETH Zürich Zürich Switzerland Medical Informatics Group University Hospital Zürich Zürich Switzerland Swiss Institute for Bioinformatics Zurich Switzerland Department of Biology ETH Zürich Zürich Switzerland Department of Signal Processing and Information Theory University Carlos III in Madrid Leganés Spain School of Engineering and Applied Sciences Harvard University CambridgeMA United States Department of Biomedicine University of Basel Basel Switzerland Tumorzentrum University Hospital Basel Basel Switzerland Swiss Data Science Center ETH Zürich and EPFL Lausanne Switzerland Department of Mathematics and Computer Science University of Basel Basel Switzerland

The recent adoption of Electronic Health Records (EHRs) by healthcare providers has introduced an important source of data that provides detailed and highly specific insights into patient phenotypes over large cohorts. These datasets, in combination with machine learning and statistical approaches, generate new opportunities for research and clinical care. However, many methods require the patient representations to be in structured formats, while the information in the EHR is often locked in unstructured text designed for human readability. In this work, we develop the methodology to automatically extract clinical features from clinical narratives from large EHR corpora without the need for prior knowledge. We consider medical terms and sentences appearing in clinical narratives as atomic information units. We propose an efficient clustering strategy suitable for the analysis of large text corpora and utilize the clusters to represent information about the patient compactly. Additionally, we define the sentences on ontologic and natural language vocabularies to automatically detect pertinent combinations of concepts present in the corpus, even when an ontology is not available. To demonstrate the utility of our approach, we perform an association study of clinical features with somatic mutation profiles from 4,007 cancer patients and their tumors. We apply the proposed algorithm to a dataset consisting of .65 thousand documents with a total of .3.2 million sentences. After correcting for cancer type and other confounding factors, we identify a total of 340 significant statistical associations between the presence of somatic mutations and clinical features. We annotated these associations according to their novelty and we report several known associations. We also propose 37 plausible, testable hypothesis for associations where the underlying biological mechanism does not appear to be known. These results illustrate that the automated discovery of clinical features

关键词： Diseases

Fast matrix inversion and determinant computation for polarimetric synthetic aperture radar

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arXiv 2018年

作者： Coelho, D.F.G. Cintra, R.J. Frery, A.C. Dimitrov, V.S. Graduate Program of Electrical and Computer Engineering Department University of Calgary Canada Signal Processing Group Departamento de Es-tatística Universidade Federal de Pernambuco Department of Electrical and Computer Engineering University of Calgary CalgaryAB Canada Laboratório de Computação Científica e Análise Numérica Universidade Federal de Alagoas Brazil Department of Electrical and Computer Engineering University of Calgary CalgaryAB Canada

This paper introduces a fast algorithm for simultaneous inversion and determinant computation of small sized matrices in the context of fully Polarimetric Synthetic Aperture Radar (PolSAR) image processing and analysis. The proposed fast algorithm is based on the computation of the adjoint matrix and the symmetry of the input matrix. The algorithm is implemented in a general purpose graphical processing unit (GPGPU) and compared to the usual approach based on Cholesky factorization. The assessment with simulated observations and data from an actual PolSAR sensor show a speedup factor of about two when compared to the usual Cholesky factorization. Moreover, the expressions provided here can be implemented in any platform. Copyright © 2018, The Authors. All rights reserved.

关键词： Graphics processing unit

IEEE Journal of Solid-State Circuits Best Paper Award Through the Years

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IEEE Solid-State Circuits Magazine 2016年第4期8卷 28-29页

作者： Abira Sengupta State Key Laboratory of Synthetical Automation for Process Industries Northeastern University Shenyang China Video and Signal Processing for Cognitive Telecommunications Group University of Genoa Genova Italy

Each year, the IEEE Journal of Solid-State Circuits Best Paper Award is presented to the authors of a paper that is considered by the journal's editorial staff and reviewers to be the most exceptional paper published in the preceding full-year volume. The award is based on accuracy, originality, technical content, and the quality of the article. The award is presented each year at the International Solid-State Circuits Conference.

关键词： Awards Solid-state circuits IEEE Societies Research and development