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Photo-controllable Luminescence from Radicals Leading to Ratiometric Emission Switching via Dynamic Intermolecular Coupling

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Angewandte Chemie 2022年第6期135卷

作者： Jia-Ming Jin Prof. Wen-Cheng Chen Ji-Hua Tan Yang Li Dr. Yingxiao Mu Dr. Ze-Lin Zhu Chen Cao Prof. Shaomin Ji Prof. Dehua Hu Prof. Yanping Huo Prof. Hao-Li Zhang Prof. Chun-Sing Lee School of Chemical Engineering and Light Industry Guangdong University of Technology Guangzhou 510006 P. R. China Contribution: Data curation (lead) Formal analysis (lead) Investigation (lead) Methodology (lead) Validation (equal) Visualization (equal) Writing - original draft (equal) Contribution: Conceptualization (lead) Data curation (lead) Formal analysis (lead) Funding acquisition (lead) Investigation (lead) Methodology (lead) Project administration (lead) Resources (lead) Supervision (lead) Validation (lead) Visualization (lead) Writing - original draft (lead) Writing - review & editing (lead) Center of Super-Diamond and Advanced Films (COSDAF) and Department of Chemistry City University of Hong Kong Hong Kong SAR P. R. China Contribution: Data curation (lead) Investigation (lead) Software (lead) Validation (equal) Visualization (equal) Contribution: Data curation (lead) Investigation (equal) Contribution: Funding acquisition (equal) Methodology (lead) Contribution: Data curation (lead) Formal analysis (equal) Contribution: Methodology (equal) Resources (equal) Contribution: Investigation (equal) Methodology (supporting) Contribution: Funding acquisition (lead) Project administration (equal) Supervision (equal) Validation (supporting) Visualization (equal) Writing - review & editing (equal) State Key Laboratory of Applied Organic Chemistry (SKLAOC) Key Laboratory of Special Function Materials and Structure Design (MOE) and College of Chemistry and Chemical Engineering Lanzhou University Lanzhou 730000 P. R. China Contribution: Investigation (supporting) Methodology (supporting) Contribution: Funding acquisition (equal) Investigation (lead) Methodology (lead) Project administration (lead) Resources (lead) Supervision (lead) Writing - original draft (lead) Writing - review & editing (lead)

The development of photoinduced luminescent radicals with dynamic emission color is still challenging. Herein we report a novel molecular radical system (TBIQ) that shows photo-controllable luminescence, leading to a wide range of ratiometric color changes via light excitation. The conjugated skeleton of TBIQ is decorated with steric-demanding tertiary butyl groups that enable appropriate intermolecular interaction to make dynamic intermolecular coupling possible for controllable behaviors. We reveal that the helicenic pseudo-planar conformation of TBIQ experiences a planarization process after light excitation, leading to more compactly stacked supermolecules and thus generating radicals via intermolecular charge transfer. The photo-controllable luminescent radical system is employed for a high-level information encryption application. This study may offer unique insight into molecular dynamic motion for optical manufacturing and broaden the scope of smart-responsive materials for advanced applications.

关键词： Encryption Luminescence Photoinduced Radicals Ratiometric Emission Responsive Materials

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Portable Acceleration of CMS Computing Workflows with Coprocessors as a Service

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Computing and software for Big Science 2024年第1期8卷 1-36页

作者： Hayrapetyan, A. Tumasyan, A. Adam, W. Andrejkovic, J.W. Bergauer, T. Chatterjee, S. Damanakis, K. Dragicevic, M. Hussain, P.S. Jeitler, M. Krammer, N. Li, A. Liko, D. Mikulec, I. Schieck, J. Schöfbeck, R. Schwarz, D. Sonawane, M. Templ, S. Waltenberger, W. Wulz, C.-E. Darwish, M.R. Janssen, T. Mechelen, P. Van Bols, E.S. D’Hondt, J. Dansana, S. De Moor, A. Delcourt, M. Faham, H. El Lowette, S. Makarenko, I. Müller, D. Sahasransu, A.R. Tavernier, S. Tytgat, M. Onsem, G. P. Van Putte, S. Van Vannerom, D. Clerbaux, B. Das, A.K. De Lentdecker, G. Favart, L. Gianneios, P. Hohov, D. Jaramillo, J. Khalilzadeh, A. Khan, F.A. Lee, K. Mahdavikhorrami, M. Malara, A. Paredes, S. Thomas, L. Bemden, M. Vanden Velde, C. Vander Vanlaer, P. De Coen, M. Dobur, D. Hong, Y. Knolle, J. Lambrecht, L. Mestdach, G. Amarilo, K. Mota Rendón, C. Samalan, A. Skovpen, K. Bossche, N. Van Den Linden, J. van der Wezenbeek, L. Benecke, A. Bethani, A. Bruno, G. Caputo, C. Delaere, C. Donertas, I.S. Giammanco, A. Jaffel, K. Jain, Sh. Lemaitre, V. Lidrych, J. Mastrapasqua, P. Mondal, K. Tran, T.T. Wertz, S. Alves, G.A. Coelho, E. Hensel, C. De Oliveira, T. Menezes Moraes, A. Teles, P. Rebello Soeiro, M. Júnior, W. L. Aldá Pereira, M. Alves Gallo Filho, M. Barroso Ferreira Malbouisson, H. Brandao Carvalho, W. Chinellato, J. Da Costa, E.M. Da Silveira, G.G. De Jesus Damiao, D. De Souza, S. Fonseca De Souza, R. Gomes Martins, J. Herrera, C. Mora Mundim, L. Nogima, H. Pinheiro, J.P. Santoro, A. Sznajder, A. Thiel, M. Pereira, A. Vilela Bernardes, C.A. Calligaris, L. Tomei, T. R. Fernandez Perez Gregores, E.M. Mercadante, P.G. Novaes, S.F. Orzari, B. Padula, Sandra S. Aleksandrov, A. Antchev, G. Hadjiiska, R. Iaydjiev, P. Misheva, M. Shopova, M. Sultanov, G. Dimitrov, A. Litov, L. Pavlov, B. Petkov, P. Petrov, A. Shumka, E. Keshri, S. Thakur, S. Cheng, T. Javaid, T. Yuan, L. Hu, Z. Liu, J. Yi, K. Chen, G.M. Chen, H.S. Chen, M. Iemmi, F. Jiang, C.H. Kapoor, A. Liao, H. Liu, Z.-A. Sharma, R. Song, J.N. Tao, J. Wang, C. Wang, J. Wang, Z. Zhang, H. Agapitos Yerevan Physics Institute Yerevan Armenia Institut für Hochenergiephysik Vienna Austria Universiteit Antwerpen Antwerpen Belgium Vrije Universiteit Brussel Brussel Belgium Université Libre de Bruxelles Bruxelles Belgium Ghent University Ghent Belgium Université Catholique de Louvain Louvain-la-Neuve Belgium Centro Brasileiro de Pesquisas Fisicas Rio de Janeiro Brazil Universidade do Estado do Rio de Janeiro Rio de Janeiro Brazil Universidade Estadual Paulista Universidade Federal do ABC São Paulo Brazil Institute for Nuclear Research and Nuclear Energy Bulgarian Academy of Sciences Sofia Bulgaria University of Sofia Sofia Bulgaria Instituto De Alta Investigación Universidad de Tarapacá Casilla 7 D Arica Chile Beihang University Beijing China Department of Physics Tsinghua University Beijing China Institute of High Energy Physics Beijing China State Key Laboratory of Nuclear Physics and Technology Peking University Beijing China Sun Yat-sen University Guangzhou China University of Science and Technology of China Hefei China Nanjing Normal University Nanjing China Institute of Modern Physics and Key Laboratory of Nuclear Physics and Ion-beam Application (MOE) - Fudan University Shanghai China Zhejiang University Hangzhou Zhejiang China Universidad de Los Andes Bogota Colombia Universidad de Antioquia Medellin Colombia University of Split Faculty of Electrical Engineering Mechanical Engineering and Naval Architecture Split Croatia Faculty of Science University of Split Split Croatia Institute Rudjer Boskovic Zagreb Croatia University of Cyprus Nicosia Cyprus Charles University Prague Czech Republic Escuela Politecnica Nacional Quito Ecuador Universidad San Francisco de Quito Quito Ecuador Academy of Scientific Research and Technology of the Arab Republic of Egypt Egyptian Network of High Energy Physics Cairo Egypt Center for High Energy Physics (CHEP-FU) Fayoum University El-Fayoum Egypt National Institute of Chemical Physics and Biophysic

Computing demands for large scientific experiments, such as the CMS experiment at the CERN LHC, will increase dramatically in the next decades. To complement the future performance increases of software running on central processing units (CPUs), explorations of coprocessor usage in data processing hold great potential and interest. Coprocessors are a class of computer processors that supplement CPUs, often improving the execution of certain functions due to architectural design choices. We explore the approach of Services for Optimized Network Inference on Coprocessors (SONIC) and study the deployment of this as-a-service approach in large-scale data processing. In the studies, we take a data processing workflow of the CMS experiment and run the main workflow on CPUs, while offloading several machine learning (ML) inference tasks onto either remote or local coprocessors, specifically graphics processing units (GPUs). With experiments performed at Google Cloud, the Purdue Tier-2 computing center, and combinations of the two, we demonstrate the acceleration of these ML algorithms individually on coprocessors and the corresponding throughput improvement for the entire workflow. This approach can be easily generalized to different types of coprocessors and deployed on local CPUs without decreasing the throughput performance. We emphasize that the SONIC approach enables high coprocessor usage and enables the portability to run workflows on different types of coprocessors. © The Author(s) 2024.

关键词： CMS Machine learning Offline and computing

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Configuration-Induced Multichromism of Phenanthridine Derivatives: A Type of Versatile Fluorescent Probe for Microenvironmental Monitoring

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Angewandte Chemie 2023年第9期135卷

作者： Wei Huang Dr. Shiyu Feng Jie Liu Baoshuai Liang Ya Zhou Mengya Yu Jiayuan Liang Prof. Jiaguo Huang Prof. Xujie Lü Prof. Weiguo Huang State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences 155 Yangqiao West Road Fuzhou Fujian 350002 P. R. China Contribution: Data curation (lead) Formal analysis (lead) Investigation (lead) Methodology (lead) Validation (lead) Fujian Science & Technology Innovation Laboratory for Optoelectronic Information of China Fuzhou Fujian 350108 P. R. China University of Chinese Academy of Sciences 19 A Yuquan Road Beijing 100049 P. R. China Contribution: Data curation (lead) Formal analysis (lead) Funding acquisition (lead) Investigation (lead) Methodology (lead) Validation (lead) Visualization (lead) Contribution: Data curation (equal) Formal analysis (equal) Investigation (equal) Methodology (equal) Software (equal) Validation (equal) Visualization (equal) Contribution: Data curation (supporting) Formal analysis (supporting) Investigation (supporting) Methodology (supporting) Validation (supporting) School of Pharmaceutical Sciences Sun Yat-sen University Guangzhou 510006 P. R. China Contribution: Data curation (supporting) Investigation (supporting) Methodology (supporting) Contribution: Data curation (supporting) Formal analysis (supporting) Investigation (supporting) Methodology (supporting) Center for High Pressure Science and Technology Advanced Research (HPSTAR) Shanghai 201203 P. R. China Contribution: Conceptualization (lead) Funding acquisition (lead) Project administration (lead) Resources (lead) Supervision (lead) Validation (lead) Writing - original draft (lead) Writing - review & editing (lead)

Fluorescent probes are attractive in diagnosis and sensing. However, most reported fluorophores can only detect one or few analytes/parameters, notably limiting their applications. Here we have designed three phenanthridine-based fluorophores (i.e., B1 , F1 , and T1 with 1D, 2D, and 3D molecular configuration, respectively) capable of monitoring various microenvironments. In rigidifying media, all fluorophores show bathochromic emissions but with different wavelength and intensity changes. Under compression, F1 shows a bathochromic emission of over 163 nm, which results in organic fluorophore-based full-color piezochromism. Moreover, both B1 and F1 exhibit an aggregation-caused quenching (ACQ) behavior, while T1 is an aggregation-induced emission (AIE) fluorophore. Further, F1 and T1 selectively concentrate in cell nucleus, whereas B1 mainly stains the cytoplasm in live cell imaging. This work provides a general design strategy of versatile fluorophores for microenvironmental monitoring.

关键词： Bioimaging Configuration-Induced Multichromism Microenvironmental Monitoring Optical Sensing Phenanthridine Derivatives

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26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3 Antwerp, Belgium. 15-20 July 2017 Abstracts

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BMC NEUROSCIENCE 2017年第SUPPL 1期18卷 95-176页

作者： [Anonymous] Department of Neuroscience Yale University New Haven CT 06520 USA Department Physiology & Pharmacology SUNY Downstate Brooklyn NY 11203 USA NYU School of Engineering 6 MetroTech Center Brooklyn NY 11201 USA Departament de Matemàtica Aplicada Universitat Politècnica de Catalunya Barcelona 08028 Spain Institut de Neurobiologie de la Méditerrannée (INMED) INSERM UMR901 Aix-Marseille Univ Marseille France Center of Neural Science New York University New York NY USA Aix-Marseille Univ INSERM INS Inst Neurosci Syst Marseille France Laboratoire de Physique Théorique et Modélisation CNRS UMR 8089 Université de Cergy-Pontoise 95300 Cergy-Pontoise Cedex France Department of Mathematics and Computer Science ENSAT Abdelmalek Essaadi’s University Tangier Morocco Laboratory of Natural Computation Department of Information and Electrical Engineering and Applied Mathematics University of Salerno 84084 Fisciano SA Italy Department of Medicine University of Salerno 84083 Lancusi SA Italy Dipartimento di Fisica Università degli Studi Aldo Moro Bari and INFN Sezione Di Bari Italy Data Analysis Department Ghent University Ghent Belgium Coma Science Group University of Liège Liège Belgium Cruces Hospital and Ikerbasque Research Center Bilbao Spain BIOtech Department of Industrial Engineering University of Trento and IRCS-PAT FBK 38010 Trento Italy Department of Data Analysis Ghent University Ghent 9000 Belgium The Wellcome Trust Centre for Neuroimaging University College London London WC1N 3BG UK Department of Electronic Engineering NED University of Engineering and Technology Karachi Pakistan Blue Brain Project École Polytechnique Fédérale de Lausanne Lausanne Switzerland Departement of Mathematics Swansea University Swansea Wales UK Laboratory for Topology and Neuroscience at the Brain Mind Institute École polytechnique fédérale de Lausanne Lausanne Switzerland Institute of Mathematics University of Aberdeen Aberdeen Scotland UK Department of Integrativ

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NTIRE 2022 Challenge on Efficient Super-Resolution: Methods and Results

arXiv

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arXiv 2022年

作者： Li, Yawei Zhang, Kai Timofte, Radu Van Gool, Luc Kong, Fangyuan Li, Mingxi Liu, Songwei Du, Zongcai Liu, Ding Zhou, Chenhui Chen, Jingyi Han, Qingrui Li, Zheyuan Liu, Yingqi Chen, Xiangyu Cai, Haoming Qiao, Yu Dong, Chao Sun, Long Pan, Jinshan Zhu, Yi Zong, Zhikai Liu, Xiaoxiao Hui, Zheng Yang, Tao Ren, Peiran Xie, Xuansong Hua, Xian-Sheng Wang, Yanbo Ji, Xiaozhong Lin, Chuming Luo, Donghao Tai, Ying Wang, Chengjie Zhang, Zhizhong Xie, Yuan Cheng, Shen Luo, Ziwei Yu, Lei Wen, Zhihong Wu, Qi Li, Youwei Fan, Haoqiang Sun, Jian Liu, Shuaicheng Huang, Yuanfei Jin, Meiguang Huang, Hua Liu, Jing Zhang, Xinjian Wang, Yan Long, Lingshun Li, Gen Zhang, Yuanfan Cao, Zuowei Sun, Lei Alexander, Panaetov Wang, Yucong Cai, Minjie Wang, Li Tian, Lu Wang, Zheyuan Ma, Hongbing Liu, Jie Chen, Chao Cai, Yidong Tang, Jie Wu, Gangshan Wang, Weiran Huang, Shirui Lu, Honglei Liu, Huan Wang, keyan Chen, Jun Chen, Shi Miao, Yuchun Huang, Zimo Zhang, Lefei Ayazoglu, Mustafa Xiong, Wei Xiong, Chengyi Wang, Fei Li, Hao Wen, Ruimian Yang, Zhijing Zou, Wenbin Zheng, Weixin Ye, Tian Zhang, Yuncheng Kong, Xiangzhen Arora, Aditya Zamir, Syed Waqas Khan, Salman Hayat, Munawar Khan, Fahad Shahbaz Gao, Dandan Zhou, Dengwen Ning, Qian Tang, Jingzhu Huang, Han Wang, Yufei Peng, Zhangheng Li, Haobo Guan, Wenxue Gong, Shenghua Li, Xin Liu, Jun Wang, Wanjun Zeng, Kun Lin, Hanjiang Chen, Xinyu Fang, Jinsheng Zhang, Shuhao Zhang, Yuhao Sinha, Abhishek Kumar Moorthi, S. Manthira Dhar, Debajyoti Yang, Hao-Hsiang Huang, Zhi-Kai Chen, Wei-Ting Chang, Hua-En Kuo, Sy-Yen Tan, Wei Chen, Hao Xu, Qian Narang, Pratik Singh, Usneek Sameen, Syed Khaitan, Harsh Yinghua, Liu Tianlin, Zhang Xiaoming, Zhang Meng, Dingxuan Tian, Chunwei Morshed, Mashrur M. Ahsan, Ahmad Omar Computer Vision Lab ETH Zurich Switzerland University of Würzburg Germany ByteDance Shenzhen China State Key Laboratory for Novel Software Technology Nanjing University China ByteDance Inc China NetEase Inc. China Shenzhen Institutes of Advanced Technology CAS China University of Macau China Shanghai AI Lab Shanghai China Nanjing University of Science and Technology China Amazon Web Services United States China Alibaba DAMO Academy EFC Yuhang District Zhejiang Hangzhou China East China Normal University China Youtu Lab Tencent China Megvii Technology China University of Electronic Science and Technology of China China School of Artificial Intelligence Beijing Normal University China Alibaba Group China Bilibili AI China Nankai-Baidu Joint Lab Nankai University Tianjin China Platform Technologies Tencent Online Video China Higher School of Economics Russia Huawei Moscow Research Center Russia Hunan University China Xidian University China Xilinx Technology Beijing Limited China College of Information Science and Engineering Xinjiang University Urumqi China Department of Electronic Engineering Tsinghua University Beijing China Nanjing University China McMaster University Canada School of Telecommunication Engineering Xidian University Xi’an China School of Computer Science Wuhan University Wuhan China School of Mathematical Science University of Electronic Science and Technology of China Chengdu China School of Computer Science The University of Sydney Sydney Australia Aselsan Research Ankara Turkey School of Electronic and Information Engineering South-Central University for Nationalities Wuhan China Guangdong University of Technology China Fujian Normal University Fuzhou University Jimei University China Design Group China Abu Dhabi United Arab Emirates Monash University Melbourne Australia Mohamed bin Zayed University of AI United Arab Emirates North China Electric Power University Changping District Beijing China The School of Art

This paper reviews the NTIRE 2022 challenge on efficient single image super-resolution with focus on the proposed solutions and results. The task of the challenge was to super-resolve an input image with a magnification factor of ×4 based on pairs of low and corresponding high resolution images. The aim was to design a network for single image super-resolution that achieved improvement of efficiency measured according to several metrics including runtime, parameters, FLOPs, activations, and memory consumption while at least maintaining the PSNR of 29.00dB on DIV2K validation set. IMDN is set as the baseline for efficiency measurement. The challenge had 3 tracks including the main track (runtime), sub-track one (model complexity), and sub-track two (overall performance). In the main track, the practical runtime performance of the submissions was evaluated. The rank of the teams were determined directly by the absolute value of the average runtime on the validation set and test set. In sub-track one, the number of parameters and FLOPs were considered. And the individual rankings of the two metrics were summed up to determine a final ranking in this track. In sub-track two, all of the five metrics mentioned in the description of the challenge including runtime, parameter count, FLOPs, activations, and memory consumption were considered. Similar to sub-track one, the rankings of five metrics were summed up to determine a final ranking. The challenge had 303 registered participants, and 43 teams made valid submissions. They gauge the state-of-the-art in efficient single image super-resolution. © 2022, CC BY.

关键词： Chemical activation

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MedShapeNet - A Large-Scale Dataset of 3D Medical Shapes for Computer Vision

arXiv

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arXiv 2023年

作者： Li, Jianning Zhou, Zongwei Yang, Jiancheng Pepe, Antonio Gsaxner, Christina Luijten, Gijs Qu, Chongyu Zhang, Tiezheng Chen, Xiaoxi Li, Wenxuan Wodzinski, Marek Friedrich, Paul Xie, Kangxian Jin, Yuan Ambigapathy, Narmada Nasca, Enrico Solak, Naida Melito, Gian Marco Vu, Viet Duc Memon, Afaque R. Schlachta, Christopher De Ribaupierre, Sandrine Patel, Rajnikant Eagleson, Roy Chen, Xiaojun Mächler, Heinrich Kirschke, Jan Stefan de la Rosa, Ezequiel Christ, Patrick Ferdinand Li, Hongwei Bran Ellis, David G. Aizenberg, Michele R. Gatidis, Sergios Küstner, Thomas Shusharina, Nadya Heller, Nicholas Andrearczyk, Vincent Depeursinge, Adrien Hatt, Mathieu Sekuboyina, Anjany Löffler, Maximilian Liebl, Hans Dorent, Reuben Vercauteren, Tom Shapey, Jonathan Kujawa, Aaron Cornelissen, Stefan Langenhuizen, Patrick Ben-Hamadou, Achraf Rekik, Ahmed Pujades, Sergi Boyer, Edmond Bolelli, Federico Grana, Costantino Lumetti, Luca Salehi, Hamidreza Ma, Jun Zhang, Yao Gharleghi, Ramtin Beier, Susann Sowmya, Arcot Garza-Villarreal, Eduardo A. Balducci, Thania Angeles-Valdez, Diego Souza, Roberto Rittner, Leticia Frayne, Richard Ji, Yuanfeng Ferrari, Vincenzo Chatterjee, Soumick Dubost, Florian Schreiber, Stefanie Mattern, Hendrik Speck, Oliver Haehn, Daniel John, Christoph Nürnberger, Andreas Pedrosa, João Ferreira, Carlos Aresta, Guilherme Cunha, António Campilho, Aurélio Suter, Yannick Garcia, Jose Lalande, Alain Vandenbossche, Vicky Van Oevelen, Aline Duquesne, Kate Mekhzoum, Hamza Vandemeulebroucke, Jef Audenaert, Emmanuel Krebs, Claudia van Leeuwen, Timo Vereecke, Evie Heidemeyer, Hauke Röhrig, Rainer Hölzle, Frank Badeli, Vahid Krieger, Kathrin Gunzer, Matthias Chen, Jianxu van Meegdenburg, Timo Dada, Amin Balzer, Miriam Fragemann, Jana Jonske, Frederic Rempe, Moritz Malorodov, Stanislav Bahnsen, Fin H. Seibold, Constantin Jaus, Alexander Marinov, Zdravko Jaeger, Paul F. Stiefelhagen, Rainer Santos, Ana Sofia Lindo, Mariana Ferreira, André Alves, Victor Kamp, Michael Abourayya, Amr Nensa, Felix Hörst, Fabian Brehmer, Alexander Hein Girardetstraße 2 Essen45131 Germany Graz University of Technology Inffeldgasse 16c Graz8010 Austria Graz Austria The Department of Computer Science Johns Hopkins University Malone Hall 3400 N Charles St BaltimoreMD21218 United States Rte Cantonale Lausanne1015 Switzerland The Department of Measurement and Electronics AGH University of Science and Technology Krakow Poland Sierre Switzerland Department of Biomedical Engineering University of Basel Hegenheimermattweg Allschwil167C CH-4123 Switzerland The Boston College 140 Commonwealth Ave Chestnut HillMA02467 United States University Hospital B7-200 339 Windermere Road LondonN6A 5A5 Canada The Department of Radiology Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai200240 China The Research Center for Connected Healthcare Big Data ZhejiangLab Zhejiang Hangzhou311121 China The Faculty of Statistics Technical University Dortmund August-Schmidt-Straße 1 Dortmund44227 Germany The Institute of Mechanics Graz University of Technology Kopernikusgasse 24/IV Graz8010 Austria The Institute of Biomedical Manufacturing and Life Quality Engineering State Key Laboratory of Mechanical System and Vibration School of Mechanical Engineering Shanghai Jiao Tong University 800 Dongchuan Road Shanghai200240 China The Department of Cardiac Surgery Medical University Graz Auenbruggerplatz 29 Graz8036 Austria The Department of Diagnostic and Interventional Radiology University Hospital Giessen Justus-Liebig-University Giessen Klinikstraße 33 Giessen35392 Germany The Department of Mechanical Engineering Mehran University of Engineering and Technology Jamshoro Sindh76062 Pakistan The Institute of Medical Robotics Shanghai Jiao Tong University Shanghai China The Geschäftsführender Oberarzt Abteilung für Interventionelle und Diagnostische Neuroradiologie Universitätsklinikum der Technischen Universität München Ismaningerstr. 22 München81675 Germany icometrix Kolonel Be

Prior to the deep learning era, shape was commonly used to describe the objects. Nowadays, state-of-the-art (SOTA) algorithms in medical imaging are predominantly diverging from computer vision, where voxel grids, meshes, point clouds, and implicit surface models are used. This is seen from numerous shape-related publications in premier vision conferences as well as the growing popularity of ShapeNet (about 51,300 models) and Princeton ModelNet (127,915 models). For the medical domain, we present a large collection of anatomical shapes (e.g., bones, organs, vessels) and 3D models of surgical instrument, called MedShapeNet, created to facilitate the translation of data-driven vision algorithms to medical applications and to adapt SOTA vision algorithms to medical problems. As a unique feature, we directly model the majority of shapes on the imaging data of real patients. As of today, MedShapeNet includes 23 datasets with more than 100,000 shapes that are paired with annotations (ground truth). Our data is freely accessible via a web interface and a Python application programming interface (API) and can be used for discriminative, reconstructive, and variational benchmarks as well as various applications in virtual, augmented, or mixed reality, and 3D printing. Exemplary, we present use cases in the fields of classification of brain tumors, skull reconstructions, multi-class anatomy completion, education, and 3D printing. In future, we will extend the data and improve the interfaces. The project pages are: https://***/ and https://***/Jianningli/*** Codes 68T01 © 2023, CC BY.

关键词： Large dataset

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Author Correction: Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers

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Scientific data 2021年第1期8卷 242页

作者： Julien Cohen-Adad Eva Alonso-Ortiz Mihael Abramovic Carina Arneitz Nicole Atcheson Laura Barlow Robert L Barry Markus Barth Marco Battiston Christian Büchel Matthew Budde Virginie Callot Anna J E Combes Benjamin De Leener Maxime Descoteaux Paulo Loureiro de Sousa Marek Dostál Julien Doyon Adam Dvorak Falk Eippert Karla R Epperson Kevin S Epperson Patrick Freund Jürgen Finsterbusch Alexandru Foias Michela Fratini Issei Fukunaga Claudia A M Gandini Wheeler-Kingshott Giancarlo Germani Guillaume Gilbert Federico Giove Charley Gros Francesco Grussu Akifumi Hagiwara Pierre-Gilles Henry Tomáš Horák Masaaki Hori James Joers Kouhei Kamiya Haleh Karbasforoushan Miloš Keřkovský Ali Khatibi Joo-Won Kim Nawal Kinany Hagen H Kitzler Shannon Kolind Yazhuo Kong Petr Kudlička Paul Kuntke Nyoman D Kurniawan Slawomir Kusmia René Labounek Maria Marcella Laganà Cornelia Laule Christine S Law Christophe Lenglet Tobias Leutritz Yaou Liu Sara Llufriu Sean Mackey Eloy Martinez-Heras Loan Mattera Igor Nestrasil Kristin P O'Grady Nico Papinutto Daniel Papp Deborah Pareto Todd B Parrish Anna Pichiecchio Ferran Prados Àlex Rovira Marc J Ruitenberg Rebecca S Samson Giovanni Savini Maryam Seif Alan C Seifert Alex K Smith Seth A Smith Zachary A Smith Elisabeth Solana Y Suzuki George Tackley Alexandra Tinnermann Jan Valošek Dimitri Van De Ville Marios C Yiannakas Kenneth A Weber Ii Nikolaus Weiskopf Richard G Wise Patrik O Wyss Junqian Xu NeuroPoly Lab Institute of Biomedical Engineering Polytechnique Montreal Montreal QC Canada. jcohen@polymtl.ca. Functional Neuroimaging Unit CRIUGM Université de Montréal Montreal QC Canada. jcohen@polymtl.ca. Mila - Quebec AI Institute Montreal QC Canada. jcohen@polymtl.ca. NeuroPoly Lab Institute of Biomedical Engineering Polytechnique Montreal Montreal QC Canada. Department of Radiology Swiss Paraplegic Centre Nottwil Switzerland. Centre for Advanced Imaging The University of Queensland Brisbane Australia. Department of Radiology University of British Columbia Vancouver BC Canada. Athinoula A. Martinos Center for Biomedical Imaging Department of Radiology Massachusetts General Hospital Charlestown MA USA. Department of Radiology Harvard Medical School Boston MA USA. Harvard-Massachusetts Institute of Technology Health Sciences & Technology Cambridge MA USA. School of Information Technology and Electrical Engineering The University of Queensland Brisbane Australia. NMR Research Unit Queen Square MS Centre UCL Queen Square Institute of Neurology Faculty of Brain Sciences University College London London UK. Department of Systems Neuroscience University Medical Center Hamburg-Eppendorf Hamburg Germany. Department of Neurosurgery Medical College of Wisconsin Milwaukee WI USA. Aix-Marseille Univ CNRS CRMBM Marseille France. APHM Hopital Universitaire Timone CEMEREM Marseille France. Vanderbilt University Institute of Imaging Science Vanderbilt University Medical Center Nashville TN USA. Department of Computer and Software Engineering Polytechnique Montreal Montreal Canada. CHU Sainte-Justine Research Centre Montreal QC Canada. Centre de Recherche CHUS CIMS Sherbrooke Canada. Sherbrooke Connectivity Imaging Lab (SCIL) Computer Science department Université de Sherbrooke Sherbrooke Canada. Université de Strasbourg CNRS ICube Strasbourg France. UHB - University Hospital Brno and Masaryk University Department of Radiology and Nuclear

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