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检索条件"机构=Systems Biology and Computer Science Program"
178 条 记 录,以下是21-30 订阅
排序:
A Guide to Tracking Phylogenies in Parallel and Distributed Agent-based Evolution Models
arXiv
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arXiv 2024年
作者: Moreno, Matthew Andres Ranjan, Anika Dolson, Emily Zaman, Luis Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor United States Center for the Study of Complex Systems University of Michigan Ann Arbor United States Michigan Institute for Data and AI in Society University of Michigan Ann Arbor United States Undergraduate Research Opportunities Program University of Michigan Ann Arbor United States Department of Computer Science and Engineering Michigan State University East Lansing United States Program in Ecology Evolution and Behavior Michigan State University East Lansing United States
computer simulations are an important tool for studying the mechanics of biological evolution. In particular, in silico work with agent-based models provides an opportunity to collect high-quality records of ancestry ... 详细信息
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Dental Disease Detection based on CNN for Panoramic Dental Radiographs
Dental Disease Detection based on CNN for Panoramic Dental R...
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IEEE International Conference on Intelligent Computing and Information systems (ICICIS)
作者: Manar El Bagoury Mirna Al-Shetairy Omar Ahmed Samah S Mehanny Tassneem Hamdy Gihan Omar Marwan Akram Rana Mohamed Hebatullah Amr Walaa Gad Bioinformatics Program Faculty of Computer and Information Sciences Ain Shams University Cairo Egypt Computer Science Department Faculty of Computer and Information Sciences Ain Shams University Cairo Egypt Oral Biology Department Faculty of Dentistry Cairo and Galala Universities Cairo Egypt Oral and Maxillofacial Radiology Department Faculty of Dentistry Cairo University Cairo Egypt Oral Radiology Department Faculty of Oral and Dental Medicine Future University in Egypt Cairo Egypt Information Systems Department Faculty of Computer and Information Sciences Ain Shams University Cairo Egypt
Panoramic dental radiography is one of the examination tools frequently performed in dental clinics and hospitals as it captures a wide range of the dental region and its surroundings, but due to the complex structure...
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Distributional bias compromises leave-one-out cross-validation
arXiv
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arXiv 2024年
作者: Austin, George I. Pe’er, Itsik Korem, Tal Department of Biomedical Informatics Columbia University Irving Medical Center New YorkNY United States Program for Mathematical Genomics Department of Systems Biology Columbia University Irving Medical Center New YorkNY United States Department of Computer Science Columbia University New YorkNY United States Department of Obstetrics and Gynecology Columbia University Irving Medical Center New YorkNY United States
Cross-validation is a common method for estimating the predictive performance of machine learning models. In a data-scarce regime, where one typically wishes to maximize the number of instances used for training the m... 详细信息
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Structured Downsampling for Fast, Memory-efficient Curation of Online Data Streams
arXiv
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arXiv 2024年
作者: Moreno, Matthew Andres Zaman, Luis Dolson, Emily Department of Ecology and Evolutionary Biology Ann Arbor United States Center for the Study of Complex Systems Ann Arbor United States Michigan Institute for Data and AI in Society Ann Arbor United States University of Michigan Ann Arbor United States Department of Computer Science and Engineering East Lansing United States Program in Ecology Evolution and Behavior East Lansing United States Michigan State University East Lansing United States
Operations over data streams typically hinge on efficient mechanisms to aggregate or summarize history on a rolling basis. For high-volume data steams, it is critical to manage state in a manner that is fast and memor... 详细信息
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Biomedical data and AI
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science China Life sciences 2025年 第5期68卷 1536-1540页
作者: Hao Xu Shibo Zhou Zefeng Zhu Vincenzo Vitelli Liangyi Chen Ziwei Dai Ning Yang Luhua Lai Shengyong Yang Sergey Ovchinnikov Zhuoran Qiao Sirui Liu Chen Song Jianfeng Pei Han Wen Jianfeng Feng Yaoyao Zhang Zhengwei Xie Yang-Yu Liu Zhiyuan Li Fulai Jin Hao Li Mohammad Lotfollahi Xuegong Zhang Ge Yang Shihua Zhang Ge Gao Pulin Li Qi Liu Jing-Dong Jackie Han Peking-Tsinghua Center for Life Sciences (CLS) Academy for Advanced Interdisciplinary StudiesPeking University Center for Quantitative Biology (CQB) Academy for Advanced Interdisciplinary StudiesPeking University Peking University-Tsinghua University-National Institute of Biological Sciences Joint Graduate Program Academy for Advanced Interdisciplinary StudiesPeking University Department of Physics University of Chicago School of Life Sciences Southern University of Science and Technology Peking University Chengdu Academy for Advanced Interdisciplinary Biotechnologies College of Chemistry and Molecular Engineering Peking University Department of Biotherapy Cancer Center and State Key Laboratory of BiotherapyWest China HospitalSichuan University Department of Biology Massachusetts Institute of Technology Lambic Therapeutics Inc. Changping Laboratory Al for Science Institute Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence Fudan University Department of Obstetrics and Gynecology West China Second University HospitalSichuan University Peking University International Cancer Institute and Peking University-Yunnan Baiyao International Medical Institute and State Key Laboratory of Natural and Biomimetic Drugs Department of Molecular and Cellular PharmacologySchool of Pharmaceutical SciencesPeking University Health Science CenterPeking University Channing Division of Network Medicine Department of MedicineBrigham and Women's Hospital and Harvard Medical School Center for Artificial Intelligence and Modeling the Carl R.Woese Institute for Genomic BiologyUniversity of Illinois Urbana-Champaign Department of Genetics and Genome Sciences School of Medicine and Department of Computer and Data Sciences and Department of Population and Quantitative Health SciencesCase Western Reserve University Department of Biochemistry and Biophysics University of California Sanger Institute Department of Automation Tsinghua University State Key Laboratory of Multimodal Artificial Intelligence Systems I
The development of artificial intelligence(AI) and the mining of biomedical data complement each other. From the direct use of computer vision results to analyze medical images for disease screening, to now integratin...
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K-Means Clustering Model to Discriminate Copper-Resistant Bacteria as Bioremediation Agents
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Procedia computer science 2021年 179卷 804-812页
作者: Ika Nurlaila Wahyu Irawati Kartika Purwandari Bens Pardamean Information Systems Department BINUS Online Learning Bina Nusantara University Jakarta Indonesia 11480 Department of Biology Education Faculty of Education Pelita Harapan University Tangerang Indonesia 15811 Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480
Copper (Cu) has been excessively used for some valuable commodities and this creates environmental problems. The inorganic element becomes toxic when presents beyond the recommended tolerated concentration. Bacterial-... 详细信息
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Spatial atlas of the mouse central nervous system at molecular resolution (vol 622, pg 552, 2023)
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NATURE 2024年 第7993期625卷 E6-E6页
作者: Shi, Hailing He, Yichun Zhou, Yiming Huang, Jiahao Maher, Kamal Wang, Brandon Tang, Zefang Luo, Shuchen Tan, Peng Wu, Morgan Lin, Zuwan Ren, Jingyi Thapa, Yaman Tang, Xin Chan, Ken Y. Deverman, Benjamin E. Shen, Hao Liu, Albert Liu, Jia Wang, Xiao Broad Institute of MIT and Harvard Cambridge MA USA Department of Chemistry Massachusetts Institute of Technology Cambridge MA USA John A. Paulson School of Engineering and Applied Sciences Harvard University Boston MA USA Computational and Systems Biology PhD Program Massachusetts Institute of Technology Cambridge MA USA Department of Electrical Engineering and Computer Science Massachusetts Institute of Technology Cambridge MA USA Department of Biology Massachusetts Institute of Technology Cambridge MA USA Klarman Cell Observatory Broad Institute of MIT and Harvard Cambridge MA USA Department of Chemistry and Chemical Biology Harvard University Cambridge MA USA Stanley Center for Psychiatric Research Broad Institute of MIT and Harvard Cambridge MA USA
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FaNDOM: Fast Nested Distance-Based Seeding of Optical Maps
SSRN
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SSRN 2021年
作者: Dehkordi, Siavash Raeisi Luebeck, Jens Bafna, Vineet Department of Computer Science & Engineering University of California San Diego San diegoCA92093 United States Bioinformatics & Systems Biology Graduate Program University of California San Diego San diegoCA92093 United States
Optical mapping provides single-molecule readouts of the locations of fluorescently labeled sequence motifs on long fragments of DNA, resolved to nucleotide-level coordinates. With the advent of microfluidic technolog... 详细信息
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BPS2025 - Systematic embedding of biomechanics within dynamical graph grammars with application to actin networks in dendritic spine heads
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Biophysical Journal 2025年 第3期124卷 206a-206a页
作者: Eric Mjolsness Matthew Hur Thomas M. Bartol Terrence J. Sejnowski Departments of Computer Science and Mathematics University of California Irvine Irvine CA USA Mathematical Computational and Systems Biology Program University of California Irvine Irvine CA USA Computational Neurobiology Laborartory Salk Institute for Biological Studies San Diego CA USA
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Periodicity Scoring of Time Series Encodes Dynamical Behavior of the Tumor Suppressor p53 ⁎ ⁎
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IFAC-PapersOnLine 2021年 第9期54卷 488-495页
作者: Caroline Moosmüller Christopher J. Tralie Mahdi Kooshkbaghi Zehor Belkhatir Maryam Pouryahya José Reyes Joseph O. Deasy Allen R. Tannenbaum Ioannis G. Kevrekidis C. Moosmüller and C. Tralie contributed equally to this work Department of Mathematics University of California San Diego La Jolla CA 92093 USA Department of Medical Physics Memorial Sloan-Kettering Cancer Center NY USA Department of Chemical and Biomolecular Engineering Johns Hopkins University Baltimore MD 21218 USA Department of Mathematics and Computer Science Ursinus College Collegeville PA USA Program in Applied and Computational Mathematics Princeton University NJ USA School of Engineering and Sustainable Development De Montfort University Leicester UK Cancer Biology and Genetics Program and Computational and Systems Biology Program Memorial Sloan-Kettering Cancer Center New York NY 10065 USA and Department of Systems Biology Harvard Medical School Boston MA 02115 USA Departments of Computer Science and Applied Mathematics & Statistics Stony Brook University NY USA
In this paper we analyze the dynamical behavior of the tumor suppressor protein p53, an essential player in the cellular stress response, which prevents a cell from dividing if severe DNA damage is present. When this ... 详细信息
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